Wall clock time and date at job start Sun Mar 7 2021 04:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86304 * 109.47231 * 2 1 4 4 C 1.50701 * 109.46958 * 240.00517 * 2 1 3 5 5 C 1.38407 * 119.82421 * 299.99863 * 4 2 1 6 6 C 1.37893 * 120.16812 * 180.02562 * 5 4 2 7 7 C 1.39828 * 119.82996 * 359.97438 * 6 5 4 8 8 C 1.47203 * 120.17183 * 179.97438 * 7 6 5 9 9 C 1.34813 * 120.00190 * 180.02562 * 8 7 6 10 10 C 1.46432 * 119.99865 * 179.97438 * 9 8 7 11 11 O 1.21689 * 120.00301 * 0.02562 * 10 9 8 12 12 N 1.34782 * 119.99579 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99791 * 180.02562 * 12 10 9 14 14 H 1.09000 * 112.90697 * 23.74438 * 13 12 10 15 15 C 1.53773 * 113.61420 * 154.99795 * 13 12 10 16 16 C 1.53780 * 87.08121 * 89.11448 * 15 13 12 17 17 H 1.08997 * 113.61635 * 270.79867 * 16 15 13 18 18 C 1.53001 * 113.61742 * 139.97885 * 16 15 13 19 19 N 1.46499 * 109.47683 * 175.00040 * 18 16 15 20 20 C 1.34430 * 126.82358 * 124.97840 * 19 18 16 21 21 N 1.30832 * 108.07308 * 179.79414 * 20 19 18 22 22 C 1.33234 * 109.83313 * 0.40801 * 21 20 19 23 23 N 1.30720 * 108.94479 * 359.58957 * 22 21 20 24 24 C 1.53774 * 113.61205 * 252.49813 * 13 12 10 25 25 C 1.39844 * 119.65977 * 0.25447 * 7 6 5 26 26 C 1.37892 * 119.82470 * 359.53396 * 25 7 6 27 27 H 0.96700 * 114.00391 * 59.99676 * 1 2 3 28 28 H 1.08996 * 109.47520 * 120.00325 * 2 1 3 29 29 H 1.48500 * 109.99680 * 60.00308 * 3 2 1 30 30 H 1.48498 * 109.99942 * 181.32223 * 3 2 1 31 31 H 1.07999 * 119.91651 * 359.97438 * 5 4 2 32 32 H 1.08003 * 120.08270 * 179.97438 * 6 5 4 33 33 H 1.08005 * 120.00218 * 359.97438 * 8 7 6 34 34 H 1.08001 * 119.99858 * 0.02562 * 9 8 7 35 35 H 0.97003 * 120.00154 * 359.97438 * 12 10 9 36 36 H 1.09008 * 113.61724 * 334.57023 * 15 13 12 37 37 H 1.09000 * 113.69458 * 203.67564 * 15 13 12 38 38 H 1.09009 * 109.47058 * 55.00127 * 18 16 15 39 39 H 1.09002 * 109.47378 * 295.00580 * 18 16 15 40 40 H 1.07999 * 125.95743 * 0.02562 * 20 19 18 41 41 H 1.08002 * 125.53021 * 179.85853 * 22 21 20 42 42 H 1.09001 * 113.61471 * 156.33903 * 24 13 12 43 43 H 1.09004 * 113.61994 * 25.42949 * 24 13 12 44 44 H 1.08000 * 120.08476 * 179.72837 * 25 7 6 45 45 H 1.07993 * 119.91351 * 180.20897 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.5947 -2.0354 -1.4461 6 6 2.0508 -2.6924 -2.5693 7 6 2.8549 -2.0163 -3.4921 8 6 3.3464 -2.7105 -4.6935 9 6 4.1219 -2.0554 -5.5807 10 6 4.6113 -2.7462 -6.7755 11 8 4.3176 -3.9114 -6.9679 12 7 5.3870 -2.0914 -7.6621 13 6 5.8761 -2.7824 -8.8578 14 1 5.2543 -3.6315 -9.1414 15 6 6.1983 -1.8370 -10.0270 16 6 7.6173 -1.7276 -9.4446 17 1 7.7297 -0.9242 -8.7166 18 6 8.7176 -1.7241 -10.5077 19 7 10.0154 -1.4975 -9.8668 20 6 11.1078 -2.2751 -9.9622 21 7 12.0586 -1.7285 -9.2487 22 6 11.6103 -0.6110 -8.6785 23 7 10.3649 -0.4253 -9.0298 24 6 7.3783 -3.1077 -8.8099 25 6 3.1945 -0.6789 -3.2648 26 6 2.7270 -0.0344 -2.1390 27 1 -0.3934 0.4417 -0.7650 28 1 1.7924 -0.5138 0.8899 29 1 1.5615 2.4678 1.2086 30 1 3.5346 1.7703 -0.0322 31 1 0.9739 -2.5564 -0.7322 32 1 1.7876 -3.7265 -2.7359 33 1 3.0865 -3.7448 -4.8639 34 1 4.3828 -1.0215 -5.4097 35 1 5.6207 -1.1625 -7.5090 36 1 5.6410 -0.9006 -9.9978 37 1 6.1631 -2.3201 -11.0035 38 1 8.5244 -0.9291 -11.2280 39 1 8.7292 -2.6852 -11.0218 40 1 11.1878 -3.1892 -10.5318 41 1 12.1841 0.0388 -8.0342 42 1 7.6656 -3.9397 -9.4529 43 1 7.7737 -3.1974 -7.7980 44 1 3.8188 -0.1514 -3.9708 45 1 2.9857 0.9994 -1.9638 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_12360594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:39:38 Heat of formation + Delta-G solvation = 100.893480 kcal Electronic energy + Delta-G solvation = -27286.306761 eV Core-core repulsion = 23273.769486 eV Total energy + Delta-G solvation = -4012.537275 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.97816 -41.36398 -40.62840 -39.55535 -37.78336 -35.42209 -35.09277 -33.86065 -32.23181 -32.15079 -31.26788 -29.13444 -27.20661 -26.73466 -24.97744 -24.09465 -23.73122 -22.91950 -22.39912 -22.12779 -20.55966 -20.14202 -18.91934 -18.35080 -18.06934 -17.30612 -17.01401 -16.73746 -16.55457 -16.22221 -16.01443 -15.95241 -15.87782 -15.46991 -15.15235 -15.11017 -14.93907 -14.74827 -14.57085 -14.20092 -13.85639 -13.80310 -13.47983 -13.32593 -13.26445 -13.04608 -12.76265 -12.28877 -12.14395 -12.05354 -11.74484 -11.72865 -11.42481 -11.39047 -11.13912 -10.96231 -10.77693 -10.50074 -10.45384 -10.13217 -10.01194 -9.27245 -5.01730 -0.58938 0.36781 0.70733 0.84881 1.29471 1.46072 1.61836 1.95515 2.01808 2.10650 2.18018 2.78802 3.39553 3.44253 3.47939 3.49381 3.54709 3.55958 3.65376 3.78181 3.81509 3.91832 3.95063 4.13437 4.16574 4.17261 4.20934 4.33376 4.42060 4.48766 4.50986 4.53642 4.68257 4.74917 4.80770 4.82640 4.93742 4.96431 5.02924 5.06309 5.13243 5.17744 5.32044 5.35284 5.45319 5.46872 5.56437 5.57638 5.87366 5.95297 6.47267 6.74337 7.14096 7.15541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.079 4.079 3 Si 0.780 3.220 4 C -0.111 4.111 5 C -0.107 4.107 6 C -0.102 4.102 7 C -0.082 4.082 8 C -0.018 4.018 9 C -0.212 4.212 10 C 0.544 3.456 11 O -0.590 6.590 12 N -0.698 5.698 13 C 0.109 3.891 14 H 0.089 0.911 15 C -0.117 4.117 16 C -0.114 4.114 17 H 0.088 0.912 18 C 0.131 3.869 19 N -0.376 5.376 20 C 0.254 3.746 21 N -0.586 5.586 22 C 0.185 3.815 23 N -0.346 5.346 24 C -0.145 4.145 25 C -0.095 4.095 26 C -0.122 4.122 27 H 0.396 0.604 28 H 0.106 0.894 29 H -0.302 1.302 30 H -0.283 1.283 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.162 0.838 35 H 0.415 0.585 36 H 0.087 0.913 37 H 0.123 0.877 38 H 0.101 0.899 39 H 0.137 0.863 40 H 0.256 0.744 41 H 0.231 0.769 42 H 0.109 0.891 43 H 0.045 0.955 44 H 0.156 0.844 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.614 3.564 -5.537 6.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.188 4.188 3 Si 0.686 3.314 4 C -0.112 4.112 5 C -0.125 4.125 6 C -0.120 4.120 7 C -0.082 4.082 8 C -0.038 4.038 9 C -0.232 4.232 10 C 0.335 3.665 11 O -0.472 6.472 12 N -0.348 5.348 13 C 0.004 3.996 14 H 0.107 0.893 15 C -0.155 4.155 16 C -0.133 4.133 17 H 0.106 0.894 18 C 0.011 3.989 19 N -0.166 5.166 20 C -0.042 4.042 21 N -0.314 5.314 22 C -0.118 4.118 23 N -0.175 5.175 24 C -0.184 4.184 25 C -0.113 4.113 26 C -0.140 4.140 27 H 0.246 0.754 28 H 0.123 0.877 29 H -0.231 1.231 30 H -0.210 1.210 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.141 0.859 34 H 0.179 0.821 35 H 0.252 0.748 36 H 0.106 0.894 37 H 0.141 0.859 38 H 0.119 0.881 39 H 0.155 0.845 40 H 0.271 0.729 41 H 0.247 0.753 42 H 0.127 0.873 43 H 0.064 0.936 44 H 0.173 0.827 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.439 3.509 -4.524 5.903 hybrid contribution 0.230 -0.625 0.573 0.878 sum -1.209 2.884 -3.951 5.039 Atomic orbital electron populations 1.86474 1.17172 1.82187 1.50545 1.25253 0.85376 1.11060 0.97137 0.93694 0.77811 0.75037 0.84809 1.20625 0.98426 0.95139 0.96983 1.21073 0.99524 0.94278 0.97639 1.21615 0.96243 1.00576 0.93544 1.19114 0.99621 0.94622 0.94889 1.22374 0.91512 0.99185 0.90744 1.23002 1.03110 1.02301 0.94790 1.18734 0.77794 0.85977 0.83995 1.90809 1.60026 1.18702 1.77703 1.45504 1.50871 1.15977 1.22489 1.21882 0.94994 0.96892 0.85878 0.89330 1.23296 0.93605 1.00377 0.98268 1.22810 0.94518 0.98065 0.97915 0.89387 1.22270 0.76622 1.05617 0.94426 1.50749 1.12970 1.16974 1.35924 1.26840 0.81988 0.98454 0.96896 1.70539 1.32862 1.11615 1.16419 1.26442 0.90711 0.95123 0.99500 1.77922 1.16773 1.09987 1.12826 1.23552 0.95774 0.97910 1.01158 1.21652 0.98691 0.93333 0.97581 1.21180 0.98048 1.00457 0.94282 0.75419 0.87658 1.23065 1.20998 0.85277 0.84536 0.85896 0.82098 0.74776 0.89436 0.85921 0.88059 0.84491 0.72874 0.75274 0.87304 0.93566 0.82662 0.83342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.18 12.76 -148.98 -1.90 -1.73 16 2 C -0.08 0.10 2.82 71.24 0.20 0.30 16 3 Si 0.78 -2.60 29.77 68.60 2.04 -0.56 16 4 C -0.11 0.10 5.40 -19.78 -0.11 0.00 16 5 C -0.11 -0.07 9.59 22.23 0.21 0.14 16 6 C -0.10 -0.05 9.80 22.57 0.22 0.17 16 7 C -0.08 0.01 5.87 -20.15 -0.12 -0.11 16 8 C -0.02 -0.02 9.46 23.84 0.23 0.21 16 9 C -0.21 0.22 9.41 23.62 0.22 0.44 16 10 C 0.54 2.16 7.74 86.38 0.67 2.83 16 11 O -0.59 -7.71 15.83 -4.31 -0.07 -7.78 16 12 N -0.70 1.56 5.26 -444.27 -2.34 -0.78 16 13 C 0.11 -0.35 4.32 45.51 0.20 -0.16 16 14 H 0.09 0.10 7.46 -2.39 -0.02 0.08 16 15 C -0.12 1.14 7.39 31.12 0.23 1.37 16 16 C -0.11 0.84 3.75 -10.27 -0.04 0.80 16 17 H 0.09 -0.29 8.00 -2.39 -0.02 -0.31 16 18 C 0.13 -1.17 6.39 86.38 0.55 -0.62 16 19 N -0.38 0.47 3.69 -352.05 -1.30 -0.83 16 20 C 0.25 -0.32 12.63 180.36 2.28 1.96 16 21 N -0.59 -3.35 11.19 -204.00 -2.28 -5.63 16 22 C 0.18 0.86 13.03 180.77 2.36 3.22 16 23 N -0.35 -1.65 12.45 -61.24 -0.76 -2.41 16 24 C -0.15 0.63 7.43 31.12 0.23 0.86 16 25 C -0.10 0.32 9.41 22.58 0.21 0.53 16 26 C -0.12 0.41 8.65 22.23 0.19 0.61 16 27 H 0.40 -3.35 8.70 -74.06 -0.64 -4.00 16 28 H 0.11 0.03 7.96 -2.39 -0.02 0.01 16 29 H -0.30 -1.44 7.11 99.48 0.71 -0.73 16 30 H -0.28 -0.26 7.11 99.48 0.71 0.45 16 31 H 0.13 0.03 8.06 -2.91 -0.02 0.01 16 32 H 0.14 -0.22 8.06 -2.91 -0.02 -0.24 16 33 H 0.12 0.46 7.52 -2.91 -0.02 0.44 16 34 H 0.16 -1.30 6.07 -2.91 -0.02 -1.32 16 35 H 0.42 -3.13 8.68 -92.71 -0.80 -3.94 16 36 H 0.09 -0.90 8.14 -2.38 -0.02 -0.92 16 37 H 0.12 -1.66 8.10 -2.39 -0.02 -1.67 16 38 H 0.10 -1.02 8.14 -2.38 -0.02 -1.04 16 39 H 0.14 -2.11 7.79 -2.39 -0.02 -2.13 16 40 H 0.26 -2.82 8.06 -2.91 -0.02 -2.84 16 41 H 0.23 -0.24 8.06 -2.91 -0.02 -0.26 16 42 H 0.11 -0.81 7.90 -2.39 -0.02 -0.83 16 43 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 44 H 0.16 -1.38 6.17 -2.91 -0.02 -1.39 16 45 H 0.15 -1.15 4.85 -2.91 -0.01 -1.17 16 Total: 0.00 -29.70 384.11 0.76 -28.95 By element: Atomic # 1 Polarization: -21.39 SS G_CDS: -0.37 Total: -21.76 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 7.73 Total: 12.54 kcal Atomic # 7 Polarization: -2.98 SS G_CDS: -6.68 Total: -9.66 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -1.97 Total: -9.51 kcal Atomic # 14 Polarization: -2.60 SS G_CDS: 2.04 Total: -0.56 kcal Total: -29.70 0.76 -28.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_12360594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.839 kcal (2) G-P(sol) polarization free energy of solvation -29.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds