Wall clock time and date at job start Sun Mar 7 2021 04:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35658 * 116.99934 * 2 1 4 4 C 1.40135 * 120.14811 * 179.97438 * 3 2 1 5 5 C 1.47531 * 120.19331 * 0.04057 * 4 3 2 6 6 O 1.21589 * 120.00292 * 0.02562 * 5 4 3 7 7 N 1.34785 * 120.00267 * 180.02562 * 5 4 3 8 8 C 1.46491 * 120.00138 * 180.02562 * 7 5 4 9 9 H 1.09001 * 112.85387 * 23.80168 * 8 7 5 10 10 C 1.53785 * 113.61494 * 154.99794 * 8 7 5 11 11 C 1.53787 * 87.07868 * 89.11515 * 10 8 7 12 12 H 1.08999 * 113.61473 * 270.88379 * 11 10 8 13 13 C 1.53002 * 113.61246 * 140.06654 * 11 10 8 14 14 N 1.46493 * 109.46962 * 175.00033 * 13 11 10 15 15 C 1.34438 * 126.82243 * 124.71196 * 14 13 11 16 16 N 1.30832 * 108.07712 * 179.89161 * 15 14 13 17 17 C 1.33241 * 109.83029 * 0.38102 * 16 15 14 18 18 N 1.30720 * 108.94803 * 359.76172 * 17 16 15 19 19 C 1.53774 * 87.08012 * 25.43442 * 11 10 8 20 20 C 1.39714 * 119.61381 * 179.77672 * 4 3 2 21 21 C 1.37785 * 119.90709 * 0.51720 * 20 4 3 22 22 C 1.50703 * 119.84859 * 179.75167 * 21 20 4 23 23 O 1.42896 * 109.47055 * 299.72797 * 22 21 20 24 24 Si 1.86304 * 109.46911 * 179.72689 * 22 21 20 25 25 C 1.38548 * 120.30164 * 359.47600 * 21 20 4 26 26 C 1.38054 * 120.38804 * 0.25640 * 25 21 20 27 27 H 1.09003 * 109.47257 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47489 * 299.99909 * 1 2 3 29 29 H 1.09007 * 109.47005 * 59.99838 * 1 2 3 30 30 H 0.97000 * 119.99529 * 0.02562 * 7 5 4 31 31 H 1.08993 * 113.61784 * 203.66610 * 10 8 7 32 32 H 1.09002 * 113.61237 * 334.49120 * 10 8 7 33 33 H 1.08998 * 109.47218 * 295.00161 * 13 11 10 34 34 H 1.09006 * 109.47234 * 55.00001 * 13 11 10 35 35 H 1.08000 * 125.95932 * 0.03394 * 15 14 13 36 36 H 1.07996 * 125.53002 * 179.79592 * 17 16 15 37 37 H 1.09003 * 113.61698 * 220.01472 * 19 11 10 38 38 H 1.09004 * 113.61641 * 89.11778 * 19 11 10 39 39 H 1.07997 * 120.04492 * 180.24946 * 20 4 3 40 40 H 1.09002 * 109.47152 * 59.72605 * 22 21 20 41 41 H 0.96708 * 114.00101 * 299.99358 * 23 22 21 42 42 H 1.48501 * 109.99652 * 179.97438 * 24 22 21 43 43 H 1.48494 * 110.00064 * 301.31786 * 24 22 21 44 44 H 1.07998 * 119.80267 * 180.27167 * 25 21 20 45 45 H 1.08004 * 119.95631 * 179.97438 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4441 1.2857 0.0005 5 6 4.2549 0.0532 0.0002 6 8 3.7095 -1.0334 -0.0010 7 7 5.6005 0.1317 0.0013 8 6 6.4056 -1.0921 0.0004 9 1 5.8708 -1.9504 -0.4064 10 6 7.8115 -0.9041 -0.5940 11 6 8.2763 -0.5357 0.8249 12 1 8.1887 0.5269 1.0510 13 6 9.6472 -1.1095 1.1890 14 7 10.0526 -0.6082 2.5045 15 6 10.4056 -1.3435 3.5732 16 7 10.6999 -0.5245 4.5501 17 6 10.5395 0.7355 4.1475 18 7 10.1439 0.7359 2.9016 19 6 7.0974 -1.3754 1.3443 20 6 4.0667 2.5364 -0.0042 21 6 3.3037 3.6837 0.0014 22 6 3.9767 5.0321 0.0020 23 8 4.7917 5.1572 1.1691 24 14 2.6824 6.3721 0.0017 25 6 1.9205 3.6034 0.0008 26 6 1.2924 2.3740 -0.0001 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 6.0357 0.9986 0.0026 31 1 8.2525 -1.8263 -0.9723 32 1 7.8786 -0.0802 -1.3044 33 1 9.5899 -2.1976 1.2167 34 1 10.3794 -0.8031 0.4419 35 1 10.4423 -2.4220 3.6168 36 1 10.7092 1.6140 4.7522 37 1 6.5882 -0.9311 2.1996 38 1 7.3431 -2.4265 1.4959 39 1 5.1446 2.6038 -0.0079 40 1 4.5991 5.1279 -0.8878 41 1 4.3028 5.0820 2.0001 42 1 3.3333 7.7069 0.0029 43 1 1.8083 6.2338 -1.1907 44 1 1.3303 4.5078 0.0008 45 1 0.2138 2.3195 -0.0001 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_12496546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:39:46 Heat of formation + Delta-G solvation = 55.307197 kcal Electronic energy + Delta-G solvation = -29861.487659 eV Core-core repulsion = 25656.517563 eV Total energy + Delta-G solvation = -4204.970096 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.97324 -41.90170 -40.87076 -39.29009 -39.19929 -37.14149 -35.42873 -34.09236 -32.46554 -32.14347 -31.82543 -29.11884 -28.50056 -26.75837 -26.18080 -25.63539 -24.36021 -22.95902 -22.79191 -22.29005 -21.63552 -20.24762 -19.50239 -18.51488 -18.26567 -18.11429 -17.25088 -17.03700 -16.87437 -16.66713 -16.24980 -16.00035 -15.96298 -15.87133 -15.84459 -15.52995 -15.10982 -14.94823 -14.67755 -14.56766 -14.46909 -13.86086 -13.66436 -13.53322 -13.41985 -13.28693 -13.13361 -12.75999 -12.46002 -12.15333 -12.12205 -12.07644 -11.82866 -11.73643 -11.44007 -11.08147 -10.95792 -10.77358 -10.50477 -10.42347 -10.31599 -10.05876 -9.32320 -4.99706 -0.31496 0.17356 0.71468 1.31325 1.46124 1.62543 1.71539 1.97376 2.02078 2.02439 2.23400 2.63070 3.37008 3.43350 3.46422 3.47687 3.53275 3.54948 3.63647 3.72004 3.79549 3.93597 3.94938 4.11187 4.16647 4.19225 4.28202 4.34374 4.35991 4.48708 4.52167 4.52469 4.63743 4.66452 4.70925 4.72930 4.80493 4.88116 4.95102 5.01101 5.06933 5.15397 5.23592 5.32228 5.47510 5.51873 5.54955 5.95790 6.25959 6.43680 6.76463 7.14120 7.14552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.313 6.313 3 C 0.172 3.828 4 C -0.198 4.198 5 C 0.559 3.441 6 O -0.561 6.561 7 N -0.703 5.703 8 C 0.111 3.889 9 H 0.090 0.910 10 C -0.118 4.118 11 C -0.114 4.114 12 H 0.084 0.916 13 C 0.132 3.868 14 N -0.376 5.376 15 C 0.255 3.745 16 N -0.585 5.585 17 C 0.186 3.814 18 N -0.348 5.348 19 C -0.143 4.143 20 C -0.018 4.018 21 C -0.167 4.167 22 C -0.067 4.067 23 O -0.555 6.555 24 Si 0.773 3.227 25 C -0.042 4.042 26 C -0.211 4.211 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.408 0.592 31 H 0.126 0.874 32 H 0.083 0.917 33 H 0.139 0.861 34 H 0.101 0.899 35 H 0.256 0.744 36 H 0.231 0.769 37 H 0.045 0.955 38 H 0.112 0.888 39 H 0.144 0.856 40 H 0.111 0.889 41 H 0.395 0.605 42 H -0.301 1.301 43 H -0.280 1.280 44 H 0.159 0.841 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.372 0.426 -1.372 2.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.225 6.225 3 C 0.123 3.877 4 C -0.202 4.202 5 C 0.348 3.652 6 O -0.441 6.441 7 N -0.356 5.356 8 C 0.005 3.995 9 H 0.108 0.892 10 C -0.157 4.157 11 C -0.133 4.133 12 H 0.103 0.897 13 C 0.012 3.988 14 N -0.167 5.167 15 C -0.041 4.041 16 N -0.313 5.313 17 C -0.117 4.117 18 N -0.176 5.176 19 C -0.181 4.181 20 C -0.037 4.037 21 C -0.168 4.168 22 C -0.177 4.177 23 O -0.363 6.363 24 Si 0.679 3.321 25 C -0.060 4.060 26 C -0.229 4.229 27 H 0.126 0.874 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.245 0.755 31 H 0.144 0.856 32 H 0.102 0.898 33 H 0.157 0.843 34 H 0.119 0.881 35 H 0.272 0.728 36 H 0.247 0.753 37 H 0.064 0.936 38 H 0.130 0.870 39 H 0.162 0.838 40 H 0.129 0.871 41 H 0.245 0.755 42 H -0.230 1.230 43 H -0.207 1.207 44 H 0.176 0.824 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.607 0.693 -2.421 3.625 hybrid contribution 0.309 0.009 -0.286 0.422 sum -2.297 0.702 -2.708 3.620 Atomic orbital electron populations 1.23463 0.76435 1.05539 1.02905 1.86334 1.23281 1.26311 1.86525 1.19397 0.91236 0.85643 0.91379 1.19404 0.91277 0.93907 1.15639 1.18291 0.82564 0.88675 0.75691 1.90803 1.72400 1.30182 1.50669 1.45535 1.05088 1.09981 1.74954 1.21893 0.91923 0.87796 0.97849 0.89190 1.23315 0.92541 1.04601 0.95200 1.22795 0.92813 1.00222 0.97508 0.89733 1.22247 0.96190 1.01038 0.79325 1.50740 1.49237 1.03583 1.13115 1.26853 0.93720 1.01481 0.82050 1.70542 1.27016 1.01670 1.32115 1.26439 0.97231 0.96741 0.91288 1.77944 1.25892 0.97951 1.15835 1.23539 0.96355 1.01606 0.96629 1.21057 1.00481 0.89406 0.92763 1.20258 0.93914 0.95935 1.06687 1.25107 1.02147 0.99178 0.91280 1.86479 1.38186 1.95331 1.16314 0.93787 0.77931 0.73878 0.86497 1.21292 0.93594 0.97998 0.93072 1.21493 1.01856 0.90827 1.08736 0.87385 0.90642 0.90923 0.75459 0.85614 0.89838 0.84298 0.88125 0.72793 0.75273 0.93593 0.86991 0.83815 0.87143 0.75510 1.22961 1.20691 0.82416 0.81789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.10 16 2 O -0.31 -2.69 8.57 -68.82 -0.59 -3.28 16 3 C 0.17 0.98 6.70 22.84 0.15 1.13 16 4 C -0.20 -1.19 5.89 -20.01 -0.12 -1.31 16 5 C 0.56 5.26 7.76 86.69 0.67 5.94 16 6 O -0.56 -9.82 14.76 16.92 0.25 -9.57 16 7 N -0.70 -1.66 5.21 -443.21 -2.31 -3.97 16 8 C 0.11 -0.03 4.32 45.52 0.20 0.17 16 9 H 0.09 0.33 7.46 -2.39 -0.02 0.31 16 10 C -0.12 0.84 7.39 31.12 0.23 1.07 16 11 C -0.11 0.57 3.75 -10.27 -0.04 0.53 16 12 H 0.08 -0.02 8.00 -2.39 -0.02 -0.04 16 13 C 0.13 -0.96 6.39 86.38 0.55 -0.41 16 14 N -0.38 -0.07 3.69 -352.06 -1.30 -1.37 16 15 C 0.26 -0.06 12.63 180.36 2.28 2.22 16 16 N -0.59 -3.90 11.19 -203.99 -2.28 -6.18 16 17 C 0.19 1.09 13.03 180.76 2.36 3.45 16 18 N -0.35 -2.22 12.45 -61.24 -0.76 -2.98 16 19 C -0.14 0.31 7.43 31.12 0.23 0.54 16 20 C -0.02 -0.01 9.09 22.52 0.20 0.19 16 21 C -0.17 0.31 5.38 -19.90 -0.11 0.21 16 22 C -0.07 0.21 2.81 71.24 0.20 0.41 16 23 O -0.56 1.09 12.77 -148.98 -1.90 -0.81 16 24 Si 0.77 -3.58 29.77 68.60 2.04 -1.54 16 25 C -0.04 0.15 8.66 22.30 0.19 0.34 16 26 C -0.21 0.25 9.03 22.34 0.20 0.46 16 27 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 28 H 0.08 -0.39 7.66 -2.39 -0.02 -0.41 16 29 H 0.07 -0.35 7.66 -2.38 -0.02 -0.37 16 30 H 0.41 -0.72 6.73 -92.71 -0.62 -1.34 16 31 H 0.13 -1.45 8.10 -2.39 -0.02 -1.47 16 32 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H 0.14 -1.97 7.79 -2.39 -0.02 -1.99 16 34 H 0.10 -0.84 8.14 -2.38 -0.02 -0.86 16 35 H 0.26 -2.61 8.06 -2.91 -0.02 -2.64 16 36 H 0.23 0.04 8.06 -2.91 -0.02 0.02 16 37 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.11 -0.67 7.90 -2.38 -0.02 -0.69 16 39 H 0.14 -0.34 6.40 -2.91 -0.02 -0.35 16 40 H 0.11 -0.26 7.96 -2.39 -0.02 -0.28 16 41 H 0.39 -3.70 8.70 -74.05 -0.64 -4.34 16 42 H -0.30 -1.10 7.11 99.48 0.71 -0.39 16 43 H -0.28 0.19 7.11 99.48 0.71 0.89 16 44 H 0.16 -1.41 4.85 -2.91 -0.01 -1.42 16 45 H 0.16 -1.09 6.30 -2.91 -0.02 -1.11 16 Total: 0.00 -32.22 376.91 1.28 -30.94 By element: Atomic # 1 Polarization: -17.08 SS G_CDS: -0.18 Total: -17.25 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 8.32 Total: 16.03 kcal Atomic # 7 Polarization: -7.85 SS G_CDS: -6.66 Total: -14.51 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -2.24 Total: -13.66 kcal Atomic # 14 Polarization: -3.58 SS G_CDS: 2.04 Total: -1.54 kcal Total: -32.22 1.28 -30.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_12496546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.242 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds