Wall clock time and date at job start Sun Mar 7 2021 04:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50693 * 109.47661 * 239.99225 * 2 1 3 5 5 C 1.37811 * 119.94477 * 254.72967 * 4 2 1 6 6 C 1.39668 * 119.87923 * 179.70807 * 5 4 2 7 7 C 1.47729 * 120.11730 * 180.29382 * 6 5 4 8 8 O 1.21566 * 119.99673 * 0.26849 * 7 6 5 9 9 N 1.34769 * 120.00233 * 180.27312 * 7 6 5 10 10 C 1.46503 * 120.00555 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.84291 * 23.80108 * 10 9 7 12 12 C 1.53779 * 113.61565 * 154.99657 * 10 9 7 13 13 C 1.53780 * 87.08072 * 89.12123 * 12 10 9 14 14 H 1.09000 * 113.61316 * 270.79751 * 13 12 10 15 15 C 1.52997 * 113.61812 * 139.97681 * 13 12 10 16 16 N 1.46494 * 109.47346 * 174.99999 * 15 13 12 17 17 C 1.34435 * 126.82635 * 125.00318 * 16 15 13 18 18 N 1.30828 * 108.07741 * 179.97438 * 17 16 15 19 19 C 1.33240 * 109.83217 * 359.97438 * 18 17 16 20 20 N 1.30710 * 108.94548 * 359.75820 * 19 18 17 21 21 C 1.53783 * 113.61901 * 252.50071 * 10 9 7 22 22 C 1.39626 * 119.76681 * 0.56357 * 6 5 4 23 23 C 1.37858 * 119.87931 * 359.73036 * 22 6 5 24 24 C 1.38640 * 120.11791 * 359.97438 * 23 22 6 25 25 F 1.35096 * 119.88074 * 180.02562 * 24 23 22 26 26 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 27 27 H 1.09000 * 109.46638 * 119.99419 * 2 1 3 28 28 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 29 29 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 30 30 H 1.08001 * 120.05639 * 359.97438 * 5 4 2 31 31 H 0.97007 * 119.99939 * 359.97438 * 9 7 6 32 32 H 1.09000 * 113.61226 * 203.66579 * 12 10 9 33 33 H 1.08995 * 113.61956 * 334.57209 * 12 10 9 34 34 H 1.08997 * 109.47459 * 295.00543 * 15 13 12 35 35 H 1.08999 * 109.46907 * 55.00067 * 15 13 12 36 36 H 1.07998 * 125.95469 * 359.97438 * 17 16 15 37 37 H 1.07997 * 125.52538 * 179.97438 * 19 18 17 38 38 H 1.09001 * 113.61184 * 25.42751 * 21 10 9 39 39 H 1.08993 * 113.61444 * 156.33342 * 21 10 9 40 40 H 1.08002 * 120.06327 * 179.70738 * 22 6 5 41 41 H 1.07996 * 119.94514 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7105 -1.2303 5 6 2.4574 -1.9800 -1.1249 6 6 2.9171 -2.6397 -2.2670 7 6 3.4758 -4.0031 -2.1611 8 8 3.5316 -4.5547 -1.0792 9 7 3.9237 -4.6353 -3.2637 10 6 4.4784 -5.9873 -3.1587 11 1 4.1175 -6.5258 -2.2824 12 6 4.3802 -6.7964 -4.4627 13 6 5.7494 -6.2066 -4.8395 14 1 5.6843 -5.2614 -5.3785 15 6 6.6853 -7.2117 -5.5137 16 7 7.9098 -6.5295 -5.9394 17 6 9.1718 -6.8642 -5.6189 18 7 9.9773 -6.0101 -6.1961 19 6 9.2700 -5.1199 -6.8908 20 7 7.9990 -5.3996 -6.7689 21 6 6.0054 -6.0419 -3.3320 22 6 2.8519 -2.0037 -3.5083 23 6 2.3295 -0.7313 -3.6015 24 6 1.8690 -0.0835 -2.4657 25 9 1.3576 1.1632 -2.5626 26 1 -0.3934 0.4417 0.7649 27 1 1.7923 -0.5138 0.8901 28 1 3.5346 1.7703 0.0322 29 1 1.5616 2.4678 -1.2086 30 1 2.5100 -2.4655 -0.1616 31 1 3.8789 -4.1953 -4.1271 32 1 4.3969 -7.8755 -4.3093 33 1 3.5706 -6.4735 -5.1172 34 1 6.9371 -8.0036 -4.8083 35 1 6.1892 -7.6437 -6.3828 36 1 9.4686 -7.6934 -4.9940 37 1 9.6805 -4.3023 -7.4646 38 1 6.5078 -5.1097 -3.0737 39 1 6.4663 -6.9147 -2.8695 40 1 3.2103 -2.5076 -4.3938 41 1 2.2782 -0.2387 -4.5612 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688106_12496548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:39:51 Heat of formation + Delta-G solvation = 54.002943 kcal Electronic energy + Delta-G solvation = -27483.099603 eV Core-core repulsion = 23282.838786 eV Total energy + Delta-G solvation = -4200.260817 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.42796 -43.03092 -41.74160 -40.49668 -39.17092 -37.64713 -35.59009 -34.22564 -32.96296 -32.16633 -31.96712 -29.24774 -27.03801 -27.01831 -25.62437 -24.28622 -23.47916 -22.99330 -22.49585 -21.68722 -20.45789 -19.10348 -18.93239 -18.54032 -18.38272 -17.95764 -17.29693 -16.99485 -16.80589 -16.40241 -16.11736 -16.04997 -15.88152 -15.33512 -15.21967 -15.14296 -15.08925 -14.95232 -14.70993 -14.23580 -14.11507 -13.82680 -13.75533 -13.56614 -13.35605 -12.97073 -12.82170 -12.37775 -12.33985 -11.92348 -11.66570 -11.44575 -11.16813 -10.95255 -10.76105 -10.68449 -10.61619 -10.30786 -10.20518 -9.89531 -4.97329 -0.59809 -0.12360 0.64665 1.21041 1.27033 1.50483 1.66967 1.83435 1.98817 2.02626 2.43617 2.90019 3.10423 3.11629 3.19858 3.23777 3.37529 3.40888 3.43414 3.53870 3.64263 3.72776 3.80376 3.89925 3.97817 4.00526 4.14675 4.19423 4.32563 4.41207 4.42113 4.47570 4.58551 4.63550 4.73134 4.74127 4.77424 4.86475 4.90429 4.96307 5.24937 5.33821 5.45242 5.46558 5.78642 6.24778 6.52933 7.00107 7.11300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.070 4.070 3 Si 0.669 3.331 4 C -0.118 4.118 5 C -0.010 4.010 6 C -0.148 4.148 7 C 0.567 3.433 8 O -0.527 6.527 9 N -0.709 5.709 10 C 0.122 3.878 11 H 0.110 0.890 12 C -0.136 4.136 13 C -0.125 4.125 14 H 0.105 0.895 15 C 0.138 3.862 16 N -0.377 5.377 17 C 0.254 3.746 18 N -0.547 5.547 19 C 0.199 3.801 20 N -0.320 5.320 21 C -0.147 4.147 22 C -0.052 4.052 23 C -0.156 4.156 24 C 0.129 3.871 25 F -0.112 7.112 26 H 0.386 0.614 27 H 0.080 0.920 28 H -0.262 1.262 29 H -0.223 1.223 30 H 0.151 0.849 31 H 0.401 0.599 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.218 0.782 37 H 0.217 0.783 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.139 0.861 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.381 -1.776 0.531 2.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.180 4.180 3 Si 0.569 3.431 4 C -0.119 4.119 5 C -0.029 4.029 6 C -0.151 4.151 7 C 0.355 3.645 8 O -0.404 6.404 9 N -0.361 5.361 10 C 0.017 3.983 11 H 0.128 0.872 12 C -0.175 4.175 13 C -0.144 4.144 14 H 0.123 0.877 15 C 0.016 3.984 16 N -0.168 5.168 17 C -0.043 4.043 18 N -0.274 5.274 19 C -0.104 4.104 20 N -0.148 5.148 21 C -0.186 4.186 22 C -0.071 4.071 23 C -0.175 4.175 24 C 0.109 3.891 25 F -0.091 7.091 26 H 0.234 0.766 27 H 0.098 0.902 28 H -0.186 1.186 29 H -0.147 1.147 30 H 0.169 0.831 31 H 0.237 0.763 32 H 0.121 0.879 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.234 0.766 37 H 0.233 0.767 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.157 0.843 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.075 -1.492 0.030 1.839 hybrid contribution 0.033 -0.382 -0.631 0.738 sum -1.042 -1.874 -0.600 2.227 Atomic orbital electron populations 1.86494 1.16609 1.81853 1.50015 1.24599 0.86312 1.10745 0.96334 0.95921 0.81630 0.78620 0.86964 1.19344 1.03851 0.95605 0.93128 1.21034 0.91478 0.91110 0.99245 1.19926 1.05447 0.95341 0.94389 1.18059 0.77217 0.85148 0.84111 1.90816 1.55571 1.66949 1.27045 1.45552 1.63359 1.16828 1.10379 1.21797 0.93865 0.82879 0.99758 0.87171 1.23355 0.96548 1.00999 0.96582 1.22992 0.95206 0.99905 0.96305 0.87727 1.21917 0.82170 0.93969 1.00337 1.50564 1.07523 1.22359 1.36388 1.26115 0.80748 0.99325 0.98114 1.70566 1.34532 1.06857 1.15432 1.26046 0.87080 0.99058 0.98219 1.78005 1.20890 1.02235 1.13621 1.23550 0.96712 1.03456 0.94878 1.21184 0.95418 0.93707 0.96811 1.21129 1.02005 0.96068 0.98303 1.17950 0.95896 0.80821 0.94389 1.91508 1.84361 1.37374 1.95833 0.76587 0.90181 1.18636 1.14693 0.83105 0.76294 0.87859 0.90031 0.87695 0.88940 0.76575 0.76714 0.90856 0.88608 0.84314 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.36 12.86 -35.23 -0.45 -0.81 16 2 C -0.07 -0.03 2.80 36.00 0.10 0.07 16 3 Si 0.67 -0.10 30.77 -169.99 -5.23 -5.33 16 4 C -0.12 -0.26 4.80 -104.62 -0.50 -0.77 16 5 C -0.01 -0.02 9.21 -39.20 -0.36 -0.38 16 6 C -0.15 -0.16 5.87 -104.97 -0.62 -0.78 16 7 C 0.57 1.02 7.77 -12.39 -0.10 0.93 16 8 O -0.53 -2.79 15.94 5.31 0.08 -2.71 16 9 N -0.71 0.90 5.21 -54.00 -0.28 0.61 16 10 C 0.12 -0.24 4.32 -67.12 -0.29 -0.53 16 11 H 0.11 -0.05 7.46 -51.93 -0.39 -0.44 16 12 C -0.14 0.59 7.39 -25.92 -0.19 0.40 16 13 C -0.12 0.43 3.76 -89.81 -0.34 0.09 16 14 H 0.10 -0.19 8.01 -51.93 -0.42 -0.61 16 15 C 0.14 -0.52 6.39 -4.05 -0.03 -0.54 16 16 N -0.38 0.13 3.69 -62.64 -0.23 -0.10 16 17 C 0.25 -0.07 12.63 -90.65 -1.14 -1.22 16 18 N -0.55 -1.46 11.19 -15.83 -0.18 -1.64 16 19 C 0.20 0.38 13.03 -91.82 -1.20 -0.81 16 20 N -0.32 -0.68 12.46 29.29 0.36 -0.32 16 21 C -0.15 0.36 7.43 -25.91 -0.19 0.17 16 22 C -0.05 0.05 9.54 -39.20 -0.37 -0.33 16 23 C -0.16 -0.02 10.01 -39.57 -0.40 -0.42 16 24 C 0.13 0.32 6.67 -39.27 -0.26 0.06 16 25 F -0.11 -0.42 12.84 2.25 0.03 -0.39 16 26 H 0.39 -1.71 8.74 45.56 0.40 -1.31 16 27 H 0.08 -0.12 7.76 -51.93 -0.40 -0.52 16 28 H -0.26 -0.74 7.11 56.52 0.40 -0.33 16 29 H -0.22 -0.62 5.33 56.52 0.30 -0.32 16 30 H 0.15 0.23 7.58 -52.49 -0.40 -0.17 16 31 H 0.40 -1.40 6.73 -40.82 -0.27 -1.67 16 32 H 0.10 -0.59 8.10 -51.93 -0.42 -1.01 16 33 H 0.08 -0.36 8.14 -51.93 -0.42 -0.78 16 34 H 0.10 -0.67 7.79 -51.93 -0.40 -1.07 16 35 H 0.09 -0.38 8.14 -51.93 -0.42 -0.80 16 36 H 0.22 -1.00 8.06 -52.49 -0.42 -1.42 16 37 H 0.22 -0.23 8.06 -52.49 -0.42 -0.65 16 38 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 39 H 0.10 -0.35 7.90 -51.93 -0.41 -0.76 16 40 H 0.14 -0.58 6.40 -52.49 -0.34 -0.92 16 41 H 0.15 -0.29 8.06 -52.49 -0.42 -0.71 16 LS Contribution 354.08 15.07 5.34 5.34 Total: 0.00 -12.01 354.08 -11.33 -23.34 By element: Atomic # 1 Polarization: -9.05 SS G_CDS: -4.89 Total: -13.94 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -5.89 Total: -4.06 kcal Atomic # 7 Polarization: -1.12 SS G_CDS: -0.32 Total: -1.44 kcal Atomic # 8 Polarization: -3.15 SS G_CDS: -0.37 Total: -3.52 kcal Atomic # 9 Polarization: -0.42 SS G_CDS: 0.03 Total: -0.39 kcal Atomic # 14 Polarization: -0.10 SS G_CDS: -5.23 Total: -5.33 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -12.01 -11.33 -23.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_12496548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.346 kcal (2) G-P(sol) polarization free energy of solvation -12.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds