Wall clock time and date at job start Sun Mar 7 2021 04:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50693 * 109.47661 * 239.99225 * 2 1 3 5 5 C 1.37811 * 119.94477 * 254.72967 * 4 2 1 6 6 C 1.39668 * 119.87923 * 179.70807 * 5 4 2 7 7 C 1.47729 * 120.11730 * 180.29382 * 6 5 4 8 8 O 1.21566 * 119.99673 * 0.26849 * 7 6 5 9 9 N 1.34769 * 120.00233 * 180.27312 * 7 6 5 10 10 C 1.46503 * 120.00555 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.84291 * 23.80108 * 10 9 7 12 12 C 1.53779 * 113.61565 * 154.99657 * 10 9 7 13 13 C 1.53780 * 87.08072 * 89.12123 * 12 10 9 14 14 H 1.09000 * 113.61316 * 270.79751 * 13 12 10 15 15 C 1.52997 * 113.61812 * 139.97681 * 13 12 10 16 16 N 1.46494 * 109.47346 * 174.99999 * 15 13 12 17 17 C 1.34435 * 126.82635 * 125.00318 * 16 15 13 18 18 N 1.30828 * 108.07741 * 179.97438 * 17 16 15 19 19 C 1.33240 * 109.83217 * 359.97438 * 18 17 16 20 20 N 1.30710 * 108.94548 * 359.75820 * 19 18 17 21 21 C 1.53783 * 113.61901 * 252.50071 * 10 9 7 22 22 C 1.39626 * 119.76681 * 0.56357 * 6 5 4 23 23 C 1.37858 * 119.87931 * 359.73036 * 22 6 5 24 24 C 1.38640 * 120.11791 * 359.97438 * 23 22 6 25 25 F 1.35096 * 119.88074 * 180.02562 * 24 23 22 26 26 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 27 27 H 1.09000 * 109.46638 * 119.99419 * 2 1 3 28 28 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 29 29 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 30 30 H 1.08001 * 120.05639 * 359.97438 * 5 4 2 31 31 H 0.97007 * 119.99939 * 359.97438 * 9 7 6 32 32 H 1.09000 * 113.61226 * 203.66579 * 12 10 9 33 33 H 1.08995 * 113.61956 * 334.57209 * 12 10 9 34 34 H 1.08997 * 109.47459 * 295.00543 * 15 13 12 35 35 H 1.08999 * 109.46907 * 55.00067 * 15 13 12 36 36 H 1.07998 * 125.95469 * 359.97438 * 17 16 15 37 37 H 1.07997 * 125.52538 * 179.97438 * 19 18 17 38 38 H 1.09001 * 113.61184 * 25.42751 * 21 10 9 39 39 H 1.08993 * 113.61444 * 156.33342 * 21 10 9 40 40 H 1.08002 * 120.06327 * 179.70738 * 22 6 5 41 41 H 1.07996 * 119.94514 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7105 -1.2303 5 6 2.4574 -1.9800 -1.1249 6 6 2.9171 -2.6397 -2.2670 7 6 3.4758 -4.0031 -2.1611 8 8 3.5316 -4.5547 -1.0792 9 7 3.9237 -4.6353 -3.2637 10 6 4.4784 -5.9873 -3.1587 11 1 4.1175 -6.5258 -2.2824 12 6 4.3802 -6.7964 -4.4627 13 6 5.7494 -6.2066 -4.8395 14 1 5.6843 -5.2614 -5.3785 15 6 6.6853 -7.2117 -5.5137 16 7 7.9098 -6.5295 -5.9394 17 6 9.1718 -6.8642 -5.6189 18 7 9.9773 -6.0101 -6.1961 19 6 9.2700 -5.1199 -6.8908 20 7 7.9990 -5.3996 -6.7689 21 6 6.0054 -6.0419 -3.3320 22 6 2.8519 -2.0037 -3.5083 23 6 2.3295 -0.7313 -3.6015 24 6 1.8690 -0.0835 -2.4657 25 9 1.3576 1.1632 -2.5626 26 1 -0.3934 0.4417 0.7649 27 1 1.7923 -0.5138 0.8901 28 1 3.5346 1.7703 0.0322 29 1 1.5616 2.4678 -1.2086 30 1 2.5100 -2.4655 -0.1616 31 1 3.8789 -4.1953 -4.1271 32 1 4.3969 -7.8755 -4.3093 33 1 3.5706 -6.4735 -5.1172 34 1 6.9371 -8.0036 -4.8083 35 1 6.1892 -7.6437 -6.3828 36 1 9.4686 -7.6934 -4.9940 37 1 9.6805 -4.3023 -7.4646 38 1 6.5078 -5.1097 -3.0737 39 1 6.4663 -6.9147 -2.8695 40 1 3.2103 -2.5076 -4.3938 41 1 2.2782 -0.2387 -4.5612 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_12496548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:39:51 Heat of formation + Delta-G solvation = 53.318831 kcal Electronic energy + Delta-G solvation = -27483.129268 eV Core-core repulsion = 23282.838786 eV Total energy + Delta-G solvation = -4200.290483 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 333.128 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.60817 -42.99169 -41.75375 -40.42451 -39.22154 -37.66103 -35.54394 -34.21446 -32.98505 -32.17184 -32.01424 -29.09947 -27.05780 -26.76261 -25.63303 -24.22583 -23.51642 -22.93455 -22.41750 -21.72395 -20.31188 -19.12590 -19.01629 -18.55081 -18.29807 -18.00490 -17.28414 -17.07381 -16.77478 -16.37488 -16.19101 -15.97310 -15.81853 -15.28753 -15.25518 -15.14662 -15.01364 -14.88719 -14.82653 -14.26461 -13.94959 -13.91250 -13.62772 -13.47181 -13.29712 -12.90819 -12.77839 -12.38989 -12.16987 -11.77492 -11.61474 -11.45244 -11.31888 -10.97552 -10.79210 -10.69962 -10.52748 -10.34466 -10.20772 -9.95317 -5.00801 -0.69028 -0.16543 0.69438 1.18796 1.41218 1.45073 1.59647 1.86178 1.92726 2.00527 2.37307 2.82788 3.12433 3.35709 3.38148 3.43060 3.45931 3.47701 3.53498 3.69849 3.77290 3.82171 3.92722 3.97252 4.15430 4.17537 4.19021 4.47263 4.49743 4.52111 4.58039 4.63618 4.72539 4.73732 4.77889 4.81682 4.90019 4.95169 5.00252 5.11007 5.30797 5.39955 5.45259 5.49417 5.94235 6.28324 6.79640 6.95938 7.12871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.078 4.078 3 Si 0.758 3.242 4 C -0.136 4.136 5 C -0.023 4.023 6 C -0.155 4.155 7 C 0.565 3.435 8 O -0.570 6.570 9 N -0.696 5.696 10 C 0.109 3.891 11 H 0.094 0.906 12 C -0.117 4.117 13 C -0.116 4.116 14 H 0.088 0.912 15 C 0.131 3.869 16 N -0.376 5.376 17 C 0.255 3.745 18 N -0.587 5.587 19 C 0.185 3.815 20 N -0.346 5.346 21 C -0.144 4.144 22 C -0.041 4.041 23 C -0.154 4.154 24 C 0.102 3.898 25 F -0.125 7.125 26 H 0.406 0.594 27 H 0.098 0.902 28 H -0.304 1.304 29 H -0.265 1.265 30 H 0.148 0.852 31 H 0.413 0.587 32 H 0.125 0.875 33 H 0.087 0.913 34 H 0.138 0.862 35 H 0.101 0.899 36 H 0.256 0.744 37 H 0.230 0.770 38 H 0.047 0.953 39 H 0.112 0.888 40 H 0.174 0.826 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.562 -3.324 -0.148 3.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.187 4.187 3 Si 0.663 3.337 4 C -0.137 4.137 5 C -0.042 4.042 6 C -0.158 4.158 7 C 0.353 3.647 8 O -0.450 6.450 9 N -0.347 5.347 10 C 0.004 3.996 11 H 0.112 0.888 12 C -0.156 4.156 13 C -0.135 4.135 14 H 0.106 0.894 15 C 0.011 3.989 16 N -0.166 5.166 17 C -0.041 4.041 18 N -0.315 5.315 19 C -0.118 4.118 20 N -0.175 5.175 21 C -0.183 4.183 22 C -0.059 4.059 23 C -0.172 4.172 24 C 0.082 3.918 25 F -0.104 7.104 26 H 0.258 0.742 27 H 0.116 0.884 28 H -0.232 1.232 29 H -0.192 1.192 30 H 0.165 0.835 31 H 0.251 0.749 32 H 0.143 0.857 33 H 0.106 0.894 34 H 0.156 0.844 35 H 0.119 0.881 36 H 0.272 0.728 37 H 0.246 0.754 38 H 0.066 0.934 39 H 0.130 0.870 40 H 0.192 0.808 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.292 -3.052 -0.656 3.378 hybrid contribution 0.106 0.070 -0.448 0.465 sum -1.186 -2.982 -1.104 3.394 Atomic orbital electron populations 1.86444 1.16629 1.82393 1.51657 1.24734 0.86450 1.11050 0.96467 0.95025 0.77643 0.76487 0.84581 1.19607 1.04216 0.95912 0.93922 1.21099 0.92164 0.91281 0.99650 1.20033 1.05514 0.95208 0.95085 1.18201 0.77012 0.85307 0.84154 1.90789 1.57625 1.67926 1.28666 1.45499 1.62002 1.17089 1.10113 1.21962 0.94304 0.82600 1.00731 0.88766 1.23316 0.95923 1.01779 0.94536 1.22839 0.95953 0.99533 0.95200 0.89378 1.22266 0.81077 0.94189 1.01396 1.50754 1.08568 1.21687 1.35635 1.26845 0.80459 0.99375 0.97434 1.70541 1.36048 1.08073 1.16811 1.26427 0.87217 0.99607 0.98522 1.77917 1.21113 1.03692 1.14791 1.23560 0.95929 1.02899 0.95895 1.21511 0.94027 0.93193 0.97167 1.21449 1.00981 0.96263 0.98553 1.18328 0.97156 0.80826 0.95476 1.91482 1.84757 1.38146 1.95971 0.74221 0.88414 1.23186 1.19206 0.83465 0.74897 0.85663 0.89421 0.84387 0.88104 0.72831 0.75352 0.93413 0.87002 0.80828 0.81149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.02 12.86 -148.98 -1.92 -2.93 16 2 C -0.08 -0.13 2.80 71.23 0.20 0.07 16 3 Si 0.76 0.70 30.77 68.60 2.11 2.81 16 4 C -0.14 -0.78 4.80 -19.86 -0.10 -0.88 16 5 C -0.02 -0.12 9.21 22.51 0.21 0.09 16 6 C -0.16 -0.44 5.87 -20.09 -0.12 -0.56 16 7 C 0.57 2.52 7.77 86.75 0.67 3.19 16 8 O -0.57 -7.02 15.94 -3.92 -0.06 -7.09 16 9 N -0.70 1.82 5.21 -443.02 -2.31 -0.49 16 10 C 0.11 -0.47 4.32 45.52 0.20 -0.27 16 11 H 0.09 -0.05 7.46 -2.39 -0.02 -0.07 16 12 C -0.12 1.25 7.39 31.12 0.23 1.48 16 13 C -0.12 0.95 3.76 -10.27 -0.04 0.92 16 14 H 0.09 -0.38 8.01 -2.39 -0.02 -0.40 16 15 C 0.13 -1.26 6.39 86.38 0.55 -0.71 16 16 N -0.38 0.65 3.69 -352.08 -1.30 -0.65 16 17 C 0.25 -0.42 12.63 180.36 2.28 1.86 16 18 N -0.59 -3.21 11.19 -204.01 -2.28 -5.49 16 19 C 0.18 0.83 13.03 180.77 2.36 3.18 16 20 N -0.35 -1.53 12.46 -61.25 -0.76 -2.29 16 21 C -0.14 0.79 7.43 31.12 0.23 1.02 16 22 C -0.04 0.10 9.54 22.52 0.21 0.31 16 23 C -0.15 -0.03 10.01 22.28 0.22 0.20 16 24 C 0.10 0.61 6.67 22.47 0.15 0.76 16 25 F -0.12 -1.13 12.84 44.97 0.58 -0.55 16 26 H 0.41 -3.61 8.74 -74.06 -0.65 -4.26 16 27 H 0.10 -0.23 7.76 -2.39 -0.02 -0.25 16 28 H -0.30 -2.35 7.11 99.48 0.71 -1.64 16 29 H -0.27 -2.01 5.33 99.48 0.53 -1.48 16 30 H 0.15 0.76 7.58 -2.91 -0.02 0.74 16 31 H 0.41 -3.25 6.73 -92.70 -0.62 -3.88 16 32 H 0.13 -1.82 8.10 -2.39 -0.02 -1.84 16 33 H 0.09 -0.97 8.14 -2.39 -0.02 -0.99 16 34 H 0.14 -2.24 7.79 -2.39 -0.02 -2.25 16 35 H 0.10 -1.07 8.14 -2.39 -0.02 -1.09 16 36 H 0.26 -2.94 8.06 -2.91 -0.02 -2.96 16 37 H 0.23 -0.25 8.06 -2.91 -0.02 -0.27 16 38 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.11 -0.98 7.90 -2.39 -0.02 -1.00 16 40 H 0.17 -1.78 6.40 -2.91 -0.02 -1.80 16 41 H 0.17 -0.83 8.06 -2.91 -0.02 -0.86 16 Total: 0.00 -31.34 354.08 1.00 -30.34 By element: Atomic # 1 Polarization: -23.99 SS G_CDS: -0.32 Total: -24.31 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 7.26 Total: 10.65 kcal Atomic # 7 Polarization: -2.27 SS G_CDS: -6.65 Total: -8.92 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -1.98 Total: -10.02 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.58 Total: -0.55 kcal Atomic # 14 Polarization: 0.70 SS G_CDS: 2.11 Total: 2.81 kcal Total: -31.34 1.00 -30.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_12496548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.656 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds