Wall clock time and date at job start Sun Mar 7 2021 04:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86306 * 109.46905 * 2 1 4 4 C 1.50702 * 109.47253 * 240.00240 * 2 1 3 5 5 C 1.35081 * 126.07337 * 105.24661 * 4 2 1 6 6 N 1.35043 * 107.97813 * 180.02562 * 5 4 2 7 7 C 1.46497 * 125.93306 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46663 * 125.00065 * 7 6 5 9 9 O 1.21279 * 120.00132 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99689 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99957 * 180.02562 * 10 8 7 12 12 H 1.09002 * 112.85121 * 23.80564 * 11 10 8 13 13 C 1.53785 * 113.61601 * 155.00099 * 11 10 8 14 14 C 1.53781 * 87.07944 * 89.11467 * 13 11 10 15 15 H 1.08993 * 113.61353 * 270.88235 * 14 13 11 16 16 C 1.52997 * 113.61024 * 140.06483 * 14 13 11 17 17 N 1.46503 * 109.47236 * 174.99915 * 16 14 13 18 18 C 1.34421 * 126.82384 * 124.99669 * 17 16 14 19 19 N 1.30833 * 108.07871 * 179.97438 * 18 17 16 20 20 C 1.33244 * 109.82904 * 0.02562 * 19 18 17 21 21 N 1.30720 * 108.94163 * 359.74737 * 20 19 18 22 22 C 1.53779 * 87.08248 * 25.43338 * 14 13 11 23 23 N 1.40080 * 108.13490 * 359.79025 * 6 5 4 24 24 C 1.31618 * 108.10698 * 0.35411 * 23 6 5 25 25 C 1.48426 * 126.03470 * 179.90997 * 24 23 6 26 26 C 1.39322 * 120.11577 * 136.84349 * 25 24 23 27 27 C 1.38024 * 119.87492 * 180.02562 * 26 25 24 28 28 C 1.38312 * 120.12198 * 0.02562 * 27 26 25 29 29 C 1.38319 * 120.24086 * 0.02562 * 28 27 26 30 30 C 1.38025 * 120.12020 * 359.97438 * 29 28 27 31 31 H 0.96697 * 114.00113 * 299.99979 * 1 2 3 32 32 H 1.08999 * 109.47328 * 119.99470 * 2 1 3 33 33 H 1.48502 * 110.00019 * 178.67763 * 3 2 1 34 34 H 1.48502 * 110.00230 * 299.99961 * 3 2 1 35 35 H 1.07994 * 126.01440 * 0.02562 * 5 4 2 36 36 H 1.08992 * 109.47825 * 245.00252 * 7 6 5 37 37 H 1.08995 * 109.46971 * 5.00949 * 7 6 5 38 38 H 0.96999 * 120.00555 * 359.97438 * 10 8 7 39 39 H 1.09003 * 113.61393 * 203.66278 * 13 11 10 40 40 H 1.09000 * 113.60994 * 334.47975 * 13 11 10 41 41 H 1.09000 * 109.47339 * 295.00094 * 16 14 13 42 42 H 1.09003 * 109.47670 * 55.00231 * 16 14 13 43 43 H 1.08006 * 125.96517 * 0.02562 * 18 17 16 44 44 H 1.07999 * 125.52796 * 180.02562 * 20 19 18 45 45 H 1.09001 * 113.61607 * 220.01968 * 22 14 13 46 46 H 1.09002 * 113.61604 * 89.11413 * 22 14 13 47 47 H 1.07995 * 120.06414 * 0.04208 * 26 25 24 48 48 H 1.08005 * 119.93765 * 180.27151 * 27 26 25 49 49 H 1.07996 * 119.88369 * 179.97438 * 28 27 26 50 50 H 1.08003 * 119.94420 * 179.97438 * 29 28 27 51 51 H 1.08007 * 120.05825 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.4673 -0.1251 -2.3237 6 7 2.7907 -1.0990 -3.2016 7 6 3.3986 -0.9011 -4.5197 8 6 4.6619 -1.7170 -4.6177 9 8 5.0189 -2.3971 -3.6792 10 7 5.3949 -1.6908 -5.7484 11 6 6.6226 -2.4843 -5.8440 12 1 6.6316 -3.3341 -5.1616 13 6 7.0097 -2.8490 -7.2870 14 6 7.7967 -1.5284 -7.3261 15 1 7.2043 -0.6768 -7.6602 16 6 9.1408 -1.6373 -8.0489 17 7 9.7565 -0.3109 -8.1377 18 6 10.9823 0.0385 -7.7109 19 7 11.1565 1.3086 -7.9722 20 6 10.0685 1.8020 -8.5624 21 7 9.1851 0.8470 -8.6901 22 6 7.9071 -1.6400 -5.7964 23 7 2.4478 -2.3316 -2.6312 24 6 1.9251 -2.1023 -1.4452 25 6 1.4234 -3.1296 -0.4986 26 6 1.7205 -3.0337 0.8591 27 6 1.2518 -3.9920 1.7349 28 6 0.4890 -5.0465 1.2667 29 6 0.1919 -5.1471 -0.0805 30 6 0.6555 -4.1943 -0.9650 31 1 -0.3933 0.4417 0.7650 32 1 1.7924 -0.5137 0.8900 33 1 3.5346 1.7704 0.0322 34 1 1.5615 2.4680 -1.2085 35 1 2.6117 0.9351 -2.4700 36 1 2.6999 -1.2188 -5.2935 37 1 3.6361 0.1539 -4.6555 38 1 5.1092 -1.1471 -6.4992 39 1 7.6401 -3.7353 -7.3593 40 1 6.1629 -2.8747 -7.9729 41 1 9.7984 -2.3067 -7.4944 42 1 8.9828 -2.0323 -9.0525 43 1 11.6989 -0.6153 -7.2359 44 1 9.9394 2.8239 -8.8869 45 1 7.7850 -0.6882 -5.2792 46 1 8.7827 -2.1958 -5.4611 47 1 2.3162 -2.2108 1.2258 48 1 1.4779 -3.9163 2.7883 49 1 0.1246 -5.7944 1.9552 50 1 -0.4038 -5.9727 -0.4410 51 1 0.4232 -4.2741 -2.0168 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_12622748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:39:54 Heat of formation + Delta-G solvation = 174.594160 kcal Electronic energy + Delta-G solvation = -35443.426618 eV Core-core repulsion = 30735.705903 eV Total energy + Delta-G solvation = -4707.720714 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.174 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.02178 -42.66891 -41.39772 -39.93311 -39.54834 -37.62869 -35.52256 -34.98755 -33.98453 -32.51106 -32.19259 -31.98395 -31.55113 -29.52770 -28.51766 -26.82598 -26.08945 -24.86912 -24.07859 -23.47914 -22.97170 -22.48062 -22.20952 -21.73596 -20.97287 -20.31533 -18.76038 -18.53453 -18.31533 -18.19003 -17.68149 -17.09867 -16.83857 -16.76883 -16.28858 -16.15452 -16.00273 -15.86684 -15.58041 -15.43021 -15.22564 -15.15000 -15.03641 -14.91725 -14.55950 -14.36223 -14.30654 -14.11008 -13.87189 -13.67244 -13.58735 -13.45088 -13.31756 -12.83742 -12.70433 -12.31577 -12.22370 -12.16740 -11.94704 -11.84050 -11.80783 -11.51812 -11.43266 -11.00365 -10.82007 -10.77771 -10.55618 -10.25450 -10.16373 -9.94372 -9.88222 -9.41006 -4.96291 0.04992 0.44342 0.59249 0.66444 1.07854 1.27735 1.33175 1.41168 1.51290 1.70655 1.89313 1.96727 1.97973 2.84947 3.15610 3.30909 3.37448 3.40082 3.40645 3.44412 3.50727 3.65841 3.74342 3.78511 3.88378 3.91254 3.92506 4.02820 4.07658 4.12104 4.14083 4.23217 4.25859 4.42579 4.43498 4.47396 4.52439 4.58800 4.66475 4.67040 4.72385 4.78294 4.87179 4.92196 4.94642 5.06480 5.08688 5.19357 5.27733 5.42852 5.43088 5.51824 5.55090 5.55729 5.66925 5.90395 6.01343 6.26572 6.39797 6.97198 7.00005 7.10113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.046 4.046 3 Si 0.782 3.218 4 C -0.225 4.225 5 C 0.054 3.946 6 N -0.360 5.360 7 C 0.108 3.892 8 C 0.500 3.500 9 O -0.561 6.561 10 N -0.697 5.697 11 C 0.111 3.889 12 H 0.082 0.918 13 C -0.117 4.117 14 C -0.111 4.111 15 H 0.091 0.909 16 C 0.131 3.869 17 N -0.376 5.376 18 C 0.254 3.746 19 N -0.586 5.586 20 C 0.186 3.814 21 N -0.346 5.346 22 C -0.143 4.143 23 N -0.286 5.286 24 C 0.114 3.886 25 C -0.029 4.029 26 C -0.104 4.104 27 C -0.118 4.118 28 C -0.115 4.115 29 C -0.125 4.125 30 C -0.112 4.112 31 H 0.398 0.602 32 H 0.079 0.921 33 H -0.293 1.293 34 H -0.279 1.279 35 H 0.196 0.804 36 H 0.145 0.855 37 H 0.167 0.833 38 H 0.418 0.582 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.136 0.864 42 H 0.101 0.899 43 H 0.255 0.745 44 H 0.232 0.768 45 H 0.048 0.952 46 H 0.106 0.894 47 H 0.132 0.868 48 H 0.154 0.846 49 H 0.150 0.850 50 H 0.142 0.858 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 0.970 -0.001 0.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.156 4.156 3 Si 0.686 3.314 4 C -0.237 4.237 5 C -0.091 4.091 6 N -0.142 5.142 7 C -0.016 4.016 8 C 0.285 3.715 9 O -0.437 6.437 10 N -0.350 5.350 11 C 0.006 3.994 12 H 0.100 0.900 13 C -0.156 4.156 14 C -0.130 4.130 15 H 0.110 0.890 16 C 0.011 3.989 17 N -0.166 5.166 18 C -0.042 4.042 19 N -0.314 5.314 20 C -0.117 4.117 21 N -0.175 5.175 22 C -0.182 4.182 23 N -0.107 5.107 24 C -0.052 4.052 25 C -0.031 4.031 26 C -0.123 4.123 27 C -0.136 4.136 28 C -0.133 4.133 29 C -0.143 4.143 30 C -0.132 4.132 31 H 0.249 0.751 32 H 0.096 0.904 33 H -0.221 1.221 34 H -0.206 1.206 35 H 0.213 0.787 36 H 0.163 0.837 37 H 0.185 0.815 38 H 0.256 0.744 39 H 0.139 0.861 40 H 0.107 0.893 41 H 0.154 0.846 42 H 0.120 0.880 43 H 0.270 0.730 44 H 0.248 0.752 45 H 0.067 0.933 46 H 0.125 0.875 47 H 0.150 0.850 48 H 0.171 0.829 49 H 0.168 0.832 50 H 0.160 0.840 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.536 0.110 -1.613 1.703 hybrid contribution -0.044 0.259 -0.237 0.354 sum 0.492 0.369 -1.850 1.950 Atomic orbital electron populations 1.86489 1.17601 1.82420 1.50791 1.24330 0.85510 1.10723 0.95007 0.94125 0.77097 0.74356 0.85810 1.19897 1.12423 0.92208 0.99126 1.22584 1.00439 0.96019 0.90084 1.48103 1.47740 1.03541 1.14832 1.21973 0.93345 1.04294 0.81988 1.20932 0.85420 0.82222 0.82885 1.90813 1.71385 1.42510 1.39035 1.45468 1.24589 1.48544 1.16389 1.21866 0.83627 0.94369 0.99575 0.89984 1.23297 1.00631 0.97596 0.94034 1.22800 0.95913 0.99577 0.94757 0.89042 1.22247 0.95084 0.77821 1.03787 1.50737 1.12715 1.09977 1.43218 1.26832 0.88308 0.93203 0.95837 1.70550 1.28634 1.09640 1.22539 1.26456 0.87063 1.01111 0.97059 1.77921 1.23712 0.93455 1.22382 1.23531 0.98566 1.00063 0.96038 1.77689 1.19437 1.03393 1.10207 1.20984 0.97909 0.93458 0.92834 1.17950 0.99412 0.93510 0.92251 1.21303 0.99765 0.99861 0.91398 1.21424 0.97461 0.93897 1.00801 1.21611 0.97471 0.98574 0.95670 1.21361 1.00162 0.98901 0.93858 1.21238 0.97857 0.94202 0.99886 0.75114 0.90356 1.22054 1.20584 0.78712 0.83720 0.81534 0.74399 0.86120 0.89304 0.84638 0.88040 0.72958 0.75204 0.93305 0.87544 0.84975 0.82862 0.83193 0.83978 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.88 12.86 -148.98 -1.92 -3.79 16 2 C -0.05 -0.14 2.50 71.24 0.18 0.03 16 3 Si 0.78 -1.35 30.77 68.60 2.11 0.76 16 4 C -0.23 -2.28 5.39 -19.95 -0.11 -2.39 16 5 C 0.05 0.40 9.96 83.47 0.83 1.23 16 6 N -0.36 -3.16 3.40 -351.93 -1.20 -4.36 16 7 C 0.11 -0.13 6.99 85.63 0.60 0.46 16 8 C 0.50 2.08 7.86 87.66 0.69 2.77 16 9 O -0.56 -8.97 15.29 -3.03 -0.05 -9.02 16 10 N -0.70 2.21 5.26 -440.02 -2.32 -0.10 16 11 C 0.11 -0.32 4.32 45.52 0.20 -0.12 16 12 H 0.08 0.24 7.46 -2.39 -0.02 0.22 16 13 C -0.12 1.10 7.39 31.12 0.23 1.33 16 14 C -0.11 0.85 3.75 -10.27 -0.04 0.81 16 15 H 0.09 -0.39 8.01 -2.39 -0.02 -0.41 16 16 C 0.13 -1.16 6.39 86.38 0.55 -0.61 16 17 N -0.38 0.52 3.69 -352.06 -1.30 -0.78 16 18 C 0.25 -0.33 12.63 180.36 2.28 1.95 16 19 N -0.59 -3.23 11.19 -204.00 -2.28 -5.51 16 20 C 0.19 0.80 13.03 180.76 2.36 3.15 16 21 N -0.35 -1.51 12.46 -61.24 -0.76 -2.27 16 22 C -0.14 0.63 7.43 31.12 0.23 0.86 16 23 N -0.29 -4.61 11.66 -48.16 -0.56 -5.17 16 24 C 0.11 1.66 6.67 42.53 0.28 1.95 16 25 C -0.03 -0.36 5.74 -20.04 -0.12 -0.48 16 26 C -0.10 -0.78 8.89 22.48 0.20 -0.58 16 27 C -0.12 -0.39 10.03 22.24 0.22 -0.16 16 28 C -0.12 -0.35 10.04 22.31 0.22 -0.13 16 29 C -0.12 -0.75 10.03 22.24 0.22 -0.52 16 30 C -0.11 -1.25 9.78 22.48 0.22 -1.03 16 31 H 0.40 -3.04 8.74 -74.06 -0.65 -3.69 16 32 H 0.08 0.06 5.57 -2.39 -0.01 0.05 16 33 H -0.29 -1.28 7.11 99.48 0.71 -0.58 16 34 H -0.28 -0.69 7.04 99.48 0.70 0.01 16 35 H 0.20 0.17 6.35 -2.91 -0.02 0.15 16 36 H 0.15 -0.93 8.14 -2.39 -0.02 -0.95 16 37 H 0.17 -1.67 8.07 -2.39 -0.02 -1.69 16 38 H 0.42 -4.05 8.70 -92.71 -0.81 -4.85 16 39 H 0.12 -1.51 8.10 -2.39 -0.02 -1.53 16 40 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 41 H 0.14 -2.03 7.79 -2.39 -0.02 -2.05 16 42 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 43 H 0.25 -2.76 8.06 -2.91 -0.02 -2.79 16 44 H 0.23 -0.34 8.06 -2.91 -0.02 -0.36 16 45 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.11 -0.72 7.90 -2.39 -0.02 -0.74 16 47 H 0.13 0.60 6.21 -2.91 -0.02 0.58 16 48 H 0.15 -0.42 8.06 -2.91 -0.02 -0.44 16 49 H 0.15 -0.39 8.06 -2.91 -0.02 -0.41 16 50 H 0.14 0.20 8.06 -2.91 -0.02 0.18 16 51 H 0.11 1.32 8.06 -2.91 -0.02 1.30 16 Total: 0.00 -42.20 433.38 0.55 -41.65 By element: Atomic # 1 Polarization: -19.49 SS G_CDS: -0.43 Total: -19.92 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 9.25 Total: 8.51 kcal Atomic # 7 Polarization: -9.77 SS G_CDS: -8.42 Total: -18.19 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -1.96 Total: -12.81 kcal Atomic # 14 Polarization: -1.35 SS G_CDS: 2.11 Total: 0.76 kcal Total: -42.20 0.55 -41.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_12622748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.240 kcal (2) G-P(sol) polarization free energy of solvation -42.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds