Wall clock time and date at job start Sun Mar 7 2021 04:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39288 * 121.02866 * 2 1 4 4 C 1.46499 * 134.19963 * 359.94820 * 3 2 1 5 5 C 1.50698 * 126.59781 * 0.26836 * 4 3 2 6 6 O 1.42899 * 109.47357 * 285.03300 * 5 4 3 7 7 Si 1.86299 * 109.47048 * 165.02842 * 5 4 3 8 8 C 1.34176 * 106.79971 * 180.31841 * 4 3 2 9 9 N 1.36949 * 109.95472 * 0.02562 * 8 4 3 10 10 C 1.37154 * 110.11307 * 0.02562 * 9 8 4 11 11 N 1.32816 * 132.96830 * 180.02562 * 10 9 8 12 12 C 1.31312 * 121.89381 * 179.97438 * 11 10 9 13 13 C 1.39739 * 121.03054 * 179.75067 * 2 1 3 14 14 C 1.47669 * 120.45891 * 359.97438 * 13 2 1 15 15 O 1.21572 * 119.99690 * 353.70821 * 14 13 2 16 16 N 1.34781 * 120.00157 * 173.70788 * 14 13 2 17 17 C 1.46497 * 119.99606 * 179.97438 * 16 14 13 18 18 H 1.09000 * 112.84963 * 23.81174 * 17 16 14 19 19 C 1.53783 * 113.61235 * 155.00340 * 17 16 14 20 20 C 1.53782 * 87.08296 * 89.11594 * 19 17 16 21 21 H 1.09003 * 113.61435 * 270.80399 * 20 19 17 22 22 C 1.52991 * 113.61521 * 139.97994 * 20 19 17 23 23 N 1.46500 * 109.47187 * 176.52891 * 22 20 19 24 24 C 1.34434 * 126.82174 * 125.00270 * 23 22 20 25 25 N 1.30827 * 108.08048 * 179.97438 * 24 23 22 26 26 C 1.33248 * 109.82510 * 359.97438 * 25 24 23 27 27 N 1.30709 * 108.94962 * 359.75748 * 26 25 24 28 28 C 1.53789 * 87.17022 * 25.39076 * 20 19 17 29 29 H 1.09000 * 109.47325 * 263.95102 * 1 2 3 30 30 H 1.09004 * 109.47473 * 23.94733 * 1 2 3 31 31 H 1.08996 * 109.47270 * 143.95046 * 1 2 3 32 32 H 1.09000 * 109.46653 * 45.03097 * 5 4 3 33 33 H 0.96699 * 114.00122 * 299.99713 * 6 5 4 34 34 H 1.48498 * 110.00337 * 180.02562 * 7 5 4 35 35 H 1.48498 * 110.00107 * 301.32693 * 7 5 4 36 36 H 1.08002 * 125.02189 * 180.02562 * 8 4 3 37 37 H 0.96994 * 124.93912 * 180.02562 * 9 8 4 38 38 H 1.08001 * 119.31335 * 179.97438 * 12 11 10 39 39 H 0.97001 * 119.99559 * 0.02562 * 16 14 13 40 40 H 1.08999 * 113.61231 * 334.57139 * 19 17 16 41 41 H 1.08993 * 113.61735 * 203.66674 * 19 17 16 42 42 H 1.09004 * 109.47685 * 296.53220 * 22 20 19 43 43 H 1.08998 * 109.47243 * 56.53381 * 22 20 19 44 44 H 1.08001 * 125.96187 * 359.97438 * 24 23 22 45 45 H 1.08001 * 125.52288 * 179.97438 * 26 25 24 46 46 H 1.08997 * 113.60761 * 89.15897 * 28 20 19 47 47 H 1.09005 * 113.61306 * 220.06002 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1936 0.0000 4 6 1.8515 2.6102 -0.0009 5 6 0.4525 3.1704 0.0034 6 8 -0.1245 3.0210 -1.2954 7 14 0.5086 4.9773 0.4539 8 6 2.9946 3.3126 -0.0075 9 7 4.0668 2.4606 -0.0114 10 6 3.6347 1.1589 -0.0080 11 7 4.2719 -0.0064 -0.0091 12 6 3.6266 -1.1500 -0.0044 13 6 2.2273 -1.1974 0.0052 14 6 1.5225 -2.4950 0.0114 15 8 0.3128 -2.5290 0.1274 16 7 2.2202 -3.6416 -0.1115 17 6 1.5209 -4.9288 -0.1048 18 1 0.4769 -4.8449 -0.4067 19 6 2.2844 -6.0484 -0.8318 20 6 2.9648 -6.3506 0.5138 21 1 3.8806 -5.7826 0.6773 22 6 3.1350 -7.8453 0.7924 23 7 3.8628 -8.0277 2.0507 24 6 3.4642 -8.7453 3.1154 25 7 4.3920 -8.6589 4.0337 26 6 5.3940 -7.8987 3.5937 27 7 5.1187 -7.4932 2.3819 28 6 1.7288 -5.7347 1.1904 29 1 -0.3634 -0.1083 1.0219 30 1 -0.3634 0.9392 -0.4171 31 1 -0.3633 -0.8308 -0.6047 32 1 -0.1520 2.6325 0.7336 33 1 0.3624 3.4749 -1.9967 34 1 -0.8649 5.5416 0.4623 35 1 1.1358 5.1486 1.7890 36 1 3.0596 4.3907 -0.0095 37 1 4.9963 2.7375 -0.0160 38 1 4.1869 -2.0733 -0.0060 39 1 3.1855 -3.6143 -0.2037 40 1 2.9708 -5.6838 -1.5959 41 1 1.6430 -6.8546 -1.1875 42 1 2.1542 -8.3148 0.8687 43 1 3.6957 -8.3051 -0.0214 44 1 2.5393 -9.2968 3.1982 45 1 6.2900 -7.6594 4.1471 46 1 0.9352 -6.4551 1.3886 47 1 1.9673 -5.1172 2.0565 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_12890568.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:40:09 Heat of formation + Delta-G solvation = 132.542306 kcal Electronic energy + Delta-G solvation = -32569.153699 eV Core-core repulsion = 28143.373239 eV Total energy + Delta-G solvation = -4425.780460 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.98057 -42.88955 -41.41295 -39.86342 -38.66589 -37.72685 -35.61047 -34.98752 -34.02616 -32.15430 -31.95066 -31.08119 -29.17042 -28.75230 -26.73166 -26.50749 -25.15471 -24.42760 -23.84373 -22.92367 -22.38837 -22.09280 -20.67682 -20.23916 -19.36327 -18.85985 -18.24935 -17.67484 -17.51846 -17.17767 -16.88382 -16.69378 -16.42672 -16.08752 -15.95194 -15.88708 -15.57649 -15.37507 -15.17699 -14.97662 -14.92286 -14.65675 -14.22016 -14.04310 -13.85510 -13.82148 -13.63776 -13.46324 -13.30719 -13.25201 -13.13532 -12.74874 -12.31925 -12.12197 -12.05198 -11.72567 -11.41932 -11.22962 -11.19262 -10.96242 -10.77803 -10.62292 -10.48940 -10.23606 -10.15465 -9.66932 -9.14677 -4.99414 -0.40317 -0.13317 0.71063 1.34402 1.41026 1.46364 1.62801 1.71701 1.75179 1.98414 2.01737 2.05200 2.69535 3.25545 3.39696 3.44952 3.47899 3.49759 3.54643 3.56049 3.60311 3.67091 3.71760 3.81486 3.95454 4.12095 4.16766 4.21341 4.25064 4.26928 4.43636 4.51393 4.53715 4.54124 4.61876 4.68609 4.72961 4.76155 4.83374 4.93350 4.98435 5.04547 5.11765 5.18350 5.23971 5.32225 5.35231 5.46663 5.56439 5.69924 5.95780 6.19751 6.38492 6.78316 6.87892 7.08917 7.14127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.061 3.939 3 C -0.167 4.167 4 C -0.206 4.206 5 C -0.049 4.049 6 O -0.557 6.557 7 Si 0.806 3.194 8 C 0.097 3.903 9 N -0.560 5.560 10 C 0.287 3.713 11 N -0.516 5.516 12 C 0.178 3.822 13 C -0.243 4.243 14 C 0.573 3.427 15 O -0.563 6.563 16 N -0.699 5.699 17 C 0.112 3.888 18 H 0.094 0.906 19 C -0.117 4.117 20 C -0.116 4.116 21 H 0.087 0.913 22 C 0.131 3.869 23 N -0.375 5.375 24 C 0.255 3.745 25 N -0.586 5.586 26 C 0.184 3.816 27 N -0.346 5.346 28 C -0.144 4.144 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.395 0.605 34 H -0.305 1.305 35 H -0.282 1.282 36 H 0.233 0.767 37 H 0.439 0.561 38 H 0.188 0.812 39 H 0.410 0.590 40 H 0.086 0.914 41 H 0.125 0.875 42 H 0.138 0.862 43 H 0.101 0.899 44 H 0.256 0.744 45 H 0.230 0.770 46 H 0.110 0.890 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.348 2.363 -4.997 6.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.053 3.947 3 C -0.175 4.175 4 C -0.213 4.213 5 C -0.158 4.158 6 O -0.365 6.365 7 Si 0.710 3.290 8 C -0.029 4.029 9 N -0.166 5.166 10 C 0.054 3.946 11 N -0.229 5.229 12 C 0.009 3.991 13 C -0.250 4.250 14 C 0.361 3.639 15 O -0.443 6.443 16 N -0.351 5.351 17 C 0.007 3.993 18 H 0.112 0.888 19 C -0.156 4.156 20 C -0.135 4.135 21 H 0.105 0.895 22 C 0.011 3.989 23 N -0.166 5.166 24 C -0.042 4.042 25 N -0.314 5.314 26 C -0.118 4.118 27 N -0.175 5.175 28 C -0.183 4.183 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.245 0.755 34 H -0.233 1.233 35 H -0.209 1.209 36 H 0.249 0.751 37 H 0.281 0.719 38 H 0.205 0.795 39 H 0.247 0.753 40 H 0.105 0.895 41 H 0.143 0.857 42 H 0.156 0.844 43 H 0.119 0.881 44 H 0.272 0.728 45 H 0.246 0.754 46 H 0.129 0.871 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.282 3.058 -4.246 5.709 hybrid contribution -0.199 -0.760 0.499 0.930 sum 2.082 2.299 -3.747 4.864 Atomic orbital electron populations 1.21085 0.89453 1.04316 1.02820 1.20058 0.97032 0.90200 0.87443 1.19815 0.93319 0.94578 1.09739 1.20814 0.96443 0.90156 1.13906 1.24733 0.89760 1.12538 0.88798 1.86471 1.54478 1.78611 1.16954 0.94054 0.80557 0.72447 0.81937 1.22427 0.83593 0.97401 0.99496 1.41635 1.10770 1.01604 1.62634 1.18779 0.89505 0.86912 0.99439 1.66493 1.40898 0.96533 1.18996 1.22874 0.89721 0.95220 0.91268 1.20509 0.95391 0.93477 1.15614 1.17980 0.86439 0.83957 0.75502 1.90736 1.15016 1.87516 1.51073 1.45492 1.11058 1.04727 1.73813 1.21948 0.97668 0.82016 0.97650 0.88801 1.23308 0.99170 0.97621 0.95460 1.22825 0.98186 0.94728 0.97750 0.89494 1.22263 0.97519 0.97410 0.81698 1.50749 1.13741 1.36651 1.15443 1.26841 1.00448 0.94231 0.82638 1.70541 1.04193 1.24166 1.32529 1.26429 0.99764 0.94567 0.91081 1.77926 0.98386 1.23705 1.17484 1.23576 0.98480 0.99559 0.96678 0.91156 0.89615 0.89924 0.88867 0.75494 1.23285 1.20882 0.75104 0.71936 0.79542 0.75257 0.89517 0.85678 0.84377 0.88103 0.72832 0.75355 0.87143 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 8.45 71.24 0.60 -0.57 16 2 C 0.06 0.56 5.98 -19.25 -0.12 0.44 16 3 C -0.17 -1.10 6.16 -20.19 -0.12 -1.22 16 4 C -0.21 -0.03 5.57 -18.64 -0.10 -0.14 16 5 C -0.05 0.03 1.88 71.24 0.13 0.16 16 6 O -0.56 -0.06 11.64 -148.98 -1.73 -1.80 16 7 Si 0.81 -4.25 30.77 68.60 2.11 -2.14 16 8 C 0.10 -0.62 10.44 82.97 0.87 0.25 16 9 N -0.56 1.78 6.04 -192.25 -1.16 0.62 16 10 C 0.29 1.44 8.42 134.03 1.13 2.56 16 11 N -0.52 -3.21 10.37 -191.74 -1.99 -5.20 16 12 C 0.18 0.66 10.67 85.20 0.91 1.57 16 13 C -0.24 -1.71 5.89 -19.99 -0.12 -1.82 16 14 C 0.57 4.12 7.72 86.73 0.67 4.79 16 15 O -0.56 -7.70 13.10 -3.94 -0.05 -7.75 16 16 N -0.70 0.06 5.21 -442.79 -2.31 -2.25 16 17 C 0.11 -0.28 4.33 45.58 0.20 -0.08 16 18 H 0.09 0.10 7.46 -2.39 -0.02 0.08 16 19 C -0.12 1.06 7.39 31.12 0.23 1.29 16 20 C -0.12 0.76 3.74 -10.27 -0.04 0.72 16 21 H 0.09 -0.21 8.04 -2.39 -0.02 -0.22 16 22 C 0.13 -1.09 6.37 86.38 0.55 -0.54 16 23 N -0.38 0.19 3.69 -352.07 -1.30 -1.11 16 24 C 0.25 -0.15 12.63 180.36 2.28 2.12 16 25 N -0.59 -3.78 11.19 -204.00 -2.28 -6.06 16 26 C 0.18 1.03 13.03 180.76 2.36 3.39 16 27 N -0.35 -1.98 12.49 -61.24 -0.76 -2.74 16 28 C -0.14 0.53 7.44 31.18 0.23 0.76 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.75 4.80 -2.38 -0.01 0.74 16 31 H 0.08 1.04 5.97 -2.39 -0.01 1.03 16 32 H 0.09 0.29 7.15 -2.39 -0.02 0.28 16 33 H 0.39 -3.45 8.70 -74.06 -0.64 -4.10 16 34 H -0.30 -1.07 7.11 99.48 0.71 -0.36 16 35 H -0.28 0.20 7.11 99.48 0.71 0.90 16 36 H 0.23 -3.83 6.36 -2.91 -0.02 -3.85 16 37 H 0.44 -3.87 8.96 -92.71 -0.83 -4.70 16 38 H 0.19 -0.66 6.43 -2.91 -0.02 -0.68 16 39 H 0.41 -1.92 6.78 -92.71 -0.63 -2.55 16 40 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 41 H 0.13 -1.64 8.10 -2.39 -0.02 -1.66 16 42 H 0.14 -2.07 7.82 -2.38 -0.02 -2.09 16 43 H 0.10 -0.95 8.14 -2.39 -0.02 -0.97 16 44 H 0.26 -2.68 8.06 -2.91 -0.02 -2.71 16 45 H 0.23 0.00 8.06 -2.91 -0.02 -0.02 16 46 H 0.11 -0.78 7.92 -2.39 -0.02 -0.80 16 47 H 0.05 0.11 8.14 -2.38 -0.02 0.09 16 Total: 0.00 -35.64 387.96 -0.81 -36.45 By element: Atomic # 1 Polarization: -20.72 SS G_CDS: -0.99 Total: -21.70 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: 9.65 Total: 13.68 kcal Atomic # 7 Polarization: -6.93 SS G_CDS: -9.80 Total: -16.74 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -1.79 Total: -9.55 kcal Atomic # 14 Polarization: -4.25 SS G_CDS: 2.11 Total: -2.14 kcal Total: -35.64 -0.81 -36.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_12890568.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.992 kcal (2) G-P(sol) polarization free energy of solvation -35.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds