Wall clock time and date at job start Sun Mar 7 2021 04:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86301 * 109.47292 * 2 1 4 4 C 1.50697 * 109.47426 * 120.00779 * 2 1 3 5 5 C 1.38334 * 119.87708 * 64.99367 * 4 2 1 6 6 C 1.37997 * 120.12909 * 180.02562 * 5 4 2 7 7 C 1.39400 * 119.87192 * 359.97438 * 6 5 4 8 8 C 1.48281 * 120.12733 * 179.97438 * 7 6 5 9 9 C 1.39502 * 119.97449 * 180.02562 * 8 7 6 10 10 C 1.37666 * 120.02236 * 179.97438 * 9 8 7 11 11 C 1.39708 * 119.97316 * 0.02562 * 10 9 8 12 12 C 1.47727 * 120.02186 * 180.02562 * 11 10 9 13 13 O 1.21572 * 120.00064 * 0.02562 * 12 11 10 14 14 N 1.34771 * 119.99860 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99971 * 180.02562 * 14 12 11 16 16 H 1.09005 * 112.84724 * 336.19709 * 15 14 12 17 17 C 1.54049 * 113.68747 * 107.46997 * 15 14 12 18 18 C 1.53786 * 86.98426 * 89.12986 * 17 15 14 19 19 H 1.09002 * 113.61357 * 270.83585 * 18 17 15 20 20 C 1.53003 * 113.61503 * 140.01654 * 18 17 15 21 21 N 1.46504 * 109.46983 * 85.86203 * 20 18 17 22 22 C 1.34433 * 126.82011 * 124.99674 * 21 20 18 23 23 N 1.30832 * 108.07196 * 179.97438 * 22 21 20 24 24 C 1.33239 * 109.83428 * 0.02562 * 23 22 21 25 25 N 1.30719 * 108.94301 * 359.75174 * 24 23 22 26 26 C 1.53781 * 87.17350 * 25.42668 * 18 17 15 27 27 C 1.39705 * 119.95341 * 0.27982 * 11 10 9 28 28 C 1.37660 * 119.97669 * 359.44292 * 27 11 10 29 29 C 1.39401 * 119.74700 * 0.26190 * 7 6 5 30 30 C 1.38000 * 119.87098 * 359.50561 * 29 7 6 31 31 H 0.96698 * 113.99029 * 299.99752 * 1 2 3 32 32 H 1.09000 * 109.46905 * 240.00597 * 2 1 3 33 33 H 1.48500 * 110.00055 * 178.68671 * 3 2 1 34 34 H 1.48501 * 110.00099 * 300.00651 * 3 2 1 35 35 H 1.08007 * 119.92981 * 0.02562 * 5 4 2 36 36 H 1.07997 * 120.06241 * 179.97438 * 6 5 4 37 37 H 1.07999 * 119.99039 * 0.02562 * 9 8 7 38 38 H 1.07995 * 120.01391 * 180.02562 * 10 9 8 39 39 H 0.97002 * 120.00225 * 0.02562 * 14 12 11 40 40 H 1.08992 * 113.69868 * 334.61096 * 17 15 14 41 41 H 1.09000 * 113.61076 * 203.62855 * 17 15 14 42 42 H 1.09000 * 109.47107 * 205.86243 * 20 18 17 43 43 H 1.08997 * 109.47112 * 325.86394 * 20 18 17 44 44 H 1.07989 * 125.96131 * 0.02562 * 22 21 20 45 45 H 1.07993 * 125.52935 * 180.02562 * 24 23 22 46 46 H 1.08999 * 113.61567 * 89.07405 * 26 18 17 47 47 H 1.08998 * 113.61196 * 219.97759 * 26 18 17 48 48 H 1.08008 * 120.01108 * 179.70430 * 27 11 10 49 49 H 1.08003 * 119.99256 * 180.25753 * 28 27 11 50 50 H 1.08003 * 120.06740 * 179.74867 * 29 7 6 51 51 H 1.08002 * 119.94236 * 180.23997 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7105 1.2303 5 6 1.6831 -2.0613 1.3956 6 6 2.1403 -2.7171 2.5205 7 6 2.8541 -2.0157 3.4910 8 6 3.3475 -2.7146 4.7022 9 6 4.0610 -2.0095 5.6716 10 6 4.5190 -2.6572 6.7967 11 6 4.2696 -4.0212 6.9671 12 6 4.7601 -4.7172 8.1743 13 8 5.3808 -4.1029 9.0201 14 7 4.5188 -6.0329 8.3384 15 6 5.0048 -6.7231 9.5358 16 1 5.8580 -6.2238 9.9951 17 6 3.8907 -7.0866 10.5356 18 6 3.7441 -8.4102 9.7664 19 1 3.0364 -8.3582 8.9390 20 6 3.5127 -9.6224 10.6709 21 7 2.0818 -9.7517 10.9576 22 6 1.3129 -10.8344 10.7485 23 7 0.0960 -10.5487 11.1347 24 6 0.0491 -9.2986 11.5935 25 7 1.2421 -8.7709 11.5100 26 6 5.2097 -8.2339 9.3355 27 6 3.5604 -4.7277 5.9925 28 6 3.0984 -4.0768 4.8710 29 6 3.0970 -0.6536 3.3214 30 6 2.6391 -0.0094 2.1902 31 1 -0.3932 0.4417 0.7651 32 1 1.7923 -0.5137 -0.8901 33 1 3.5347 1.7702 0.0320 34 1 1.5615 2.4680 -1.2084 35 1 1.1303 -2.6037 0.6428 36 1 1.9455 -3.7716 2.6487 37 1 4.2533 -0.9550 5.5399 38 1 5.0710 -2.1111 7.5473 39 1 4.0232 -6.5230 7.6637 40 1 3.0139 -6.4427 10.4678 41 1 4.2461 -7.2131 11.5583 42 1 3.8655 -10.5231 10.1686 43 1 4.0596 -9.4889 11.6042 44 1 1.6424 -11.7759 10.3347 45 1 -0.8308 -8.8034 11.9766 46 1 5.9251 -8.6734 10.0306 47 1 5.3970 -8.5156 8.2993 48 1 3.3712 -5.7832 6.1210 49 1 2.5465 -4.6218 4.1194 50 1 3.6460 -0.1043 4.0720 51 1 2.8301 1.0451 2.0558 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_13158362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:40:14 Heat of formation + Delta-G solvation = 115.370171 kcal Electronic energy + Delta-G solvation = -33624.205138 eV Core-core repulsion = 29072.079579 eV Total energy + Delta-G solvation = -4552.125559 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 391.168 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.96058 -41.67236 -40.91925 -39.96167 -38.98766 -37.51677 -35.49770 -34.35804 -33.64721 -32.56769 -32.13729 -31.60174 -30.85881 -29.03051 -27.04375 -26.72468 -25.03960 -24.68225 -24.10937 -22.83887 -22.65401 -22.50756 -22.32591 -21.40690 -20.37399 -19.30722 -18.48450 -18.18557 -17.79566 -17.29074 -16.85342 -16.78658 -16.42952 -16.24491 -16.13505 -16.04057 -15.84168 -15.47798 -15.34624 -15.26277 -15.02606 -14.97265 -14.88145 -14.65179 -14.35306 -14.24074 -14.09742 -13.97025 -13.60515 -13.51073 -13.23676 -13.08712 -12.85757 -12.74516 -12.56106 -12.20283 -12.12042 -11.96728 -11.73402 -11.62170 -11.27350 -11.17577 -10.95219 -10.79593 -10.77173 -10.54355 -10.42634 -10.16567 -10.10055 -9.97238 -9.10064 -5.01774 -0.72355 0.31332 0.38917 0.47385 0.73190 1.29698 1.48030 1.61637 1.73432 1.95015 1.98101 2.03251 2.57632 2.98266 3.31290 3.37569 3.44221 3.52309 3.55765 3.60368 3.63529 3.65587 3.75287 3.79731 3.84384 3.97211 3.99370 4.03089 4.13854 4.22442 4.24224 4.25690 4.35202 4.44282 4.46470 4.59523 4.61866 4.64880 4.66707 4.75843 4.81516 4.87158 4.89189 4.98271 5.03241 5.06409 5.09902 5.13390 5.17946 5.23390 5.34688 5.39122 5.47847 5.48440 5.53456 5.62936 5.76323 5.91517 5.97766 6.38107 6.74627 7.06608 7.16161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.074 4.074 3 Si 0.772 3.228 4 C -0.119 4.119 5 C -0.103 4.103 6 C -0.108 4.108 7 C -0.061 4.061 8 C -0.021 4.021 9 C -0.121 4.121 10 C -0.070 4.070 11 C -0.153 4.153 12 C 0.558 3.442 13 O -0.580 6.580 14 N -0.695 5.695 15 C 0.106 3.894 16 H 0.086 0.914 17 C -0.137 4.137 18 C -0.110 4.110 19 H 0.091 0.909 20 C 0.130 3.870 21 N -0.377 5.377 22 C 0.256 3.744 23 N -0.585 5.585 24 C 0.183 3.817 25 N -0.344 5.344 26 C -0.113 4.113 27 C -0.075 4.075 28 C -0.121 4.121 29 C -0.106 4.106 30 C -0.118 4.118 31 H 0.395 0.605 32 H 0.107 0.893 33 H -0.286 1.286 34 H -0.301 1.301 35 H 0.131 0.869 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.129 0.871 39 H 0.413 0.587 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.145 0.855 43 H 0.095 0.905 44 H 0.259 0.741 45 H 0.228 0.772 46 H 0.120 0.880 47 H 0.096 0.904 48 H 0.154 0.846 49 H 0.155 0.845 50 H 0.148 0.852 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.428 -4.280 -2.245 5.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.184 4.184 3 Si 0.678 3.322 4 C -0.119 4.119 5 C -0.121 4.121 6 C -0.126 4.126 7 C -0.061 4.061 8 C -0.022 4.022 9 C -0.139 4.139 10 C -0.089 4.089 11 C -0.156 4.156 12 C 0.347 3.653 13 O -0.461 6.461 14 N -0.347 5.347 15 C 0.000 4.000 16 H 0.104 0.896 17 C -0.176 4.176 18 C -0.129 4.129 19 H 0.109 0.891 20 C 0.010 3.990 21 N -0.168 5.168 22 C -0.040 4.040 23 N -0.314 5.314 24 C -0.120 4.120 25 N -0.172 5.172 26 C -0.152 4.152 27 C -0.093 4.093 28 C -0.139 4.139 29 C -0.124 4.124 30 C -0.135 4.135 31 H 0.245 0.755 32 H 0.124 0.876 33 H -0.213 1.213 34 H -0.229 1.229 35 H 0.149 0.851 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.146 0.854 39 H 0.251 0.749 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.162 0.838 43 H 0.114 0.886 44 H 0.275 0.725 45 H 0.244 0.756 46 H 0.138 0.862 47 H 0.114 0.886 48 H 0.172 0.828 49 H 0.173 0.827 50 H 0.165 0.835 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.426 -3.085 -2.397 4.599 hybrid contribution -0.140 -0.594 -0.358 0.707 sum 2.286 -3.679 -2.754 5.133 Atomic orbital electron populations 1.86476 1.17173 1.82163 1.50511 1.25162 0.85319 1.10658 0.97247 0.93762 0.77894 0.75571 0.84942 1.20540 0.99318 0.95178 0.96902 1.21104 0.99033 0.94036 0.97909 1.21507 0.96920 1.00973 0.93169 1.18932 0.99282 0.93941 0.93929 1.19154 0.95954 0.93864 0.93184 1.21404 0.98147 1.01345 0.93000 1.21272 0.96904 0.93342 0.97375 1.19986 1.04467 0.95298 0.95870 1.18576 0.78536 0.82358 0.85855 1.90772 1.42690 1.66975 1.45623 1.45472 1.57131 1.08612 1.23451 1.22024 0.97395 0.94352 0.86189 0.89604 1.23427 0.98181 0.97142 0.98863 1.22779 0.98316 0.93597 0.98218 0.89071 1.22258 0.73911 1.01723 1.01117 1.50769 1.10866 1.09531 1.45631 1.26905 0.85969 0.95105 0.96034 1.70540 1.22095 1.16631 1.22084 1.26414 0.96791 0.90306 0.98499 1.78028 1.03012 1.15045 1.21146 1.23278 0.95303 0.92102 1.04475 1.21427 0.94855 1.00695 0.92351 1.21461 1.00350 0.93621 0.98423 1.21496 0.99218 0.93640 0.98031 1.21145 0.98342 1.00222 0.93824 0.75478 0.87581 1.21342 1.22929 0.85107 0.83741 0.83191 0.85351 0.74901 0.93442 0.89063 0.83755 0.88647 0.72521 0.75613 0.86156 0.88568 0.82827 0.82743 0.83475 0.83579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.21 12.83 -148.98 -1.91 -1.70 16 2 C -0.07 0.09 2.80 71.23 0.20 0.29 16 3 Si 0.77 -2.00 29.79 68.60 2.04 0.05 16 4 C -0.12 0.13 5.36 -19.82 -0.11 0.02 16 5 C -0.10 0.06 9.67 22.24 0.21 0.28 16 6 C -0.11 0.18 9.43 22.49 0.21 0.39 16 7 C -0.06 0.04 5.88 -20.05 -0.12 -0.07 16 8 C -0.02 0.01 5.88 -19.99 -0.12 -0.11 16 9 C -0.12 -0.04 9.41 22.44 0.21 0.17 16 10 C -0.07 -0.27 9.58 22.49 0.22 -0.05 16 11 C -0.15 -0.46 5.88 -20.06 -0.12 -0.58 16 12 C 0.56 3.51 7.77 86.75 0.67 4.18 16 13 O -0.58 -8.71 15.93 -3.94 -0.06 -8.78 16 14 N -0.70 0.69 5.22 -442.57 -2.31 -1.62 16 15 C 0.11 -0.19 4.33 45.61 0.20 0.01 16 16 H 0.09 0.26 7.46 -2.38 -0.02 0.24 16 17 C -0.14 0.15 7.45 31.21 0.23 0.38 16 18 C -0.11 0.84 3.73 -10.26 -0.04 0.80 16 19 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 20 C 0.13 -1.21 6.37 86.38 0.55 -0.66 16 21 N -0.38 0.62 3.69 -352.06 -1.30 -0.68 16 22 C 0.26 -0.60 12.63 180.36 2.28 1.68 16 23 N -0.59 -3.01 11.19 -204.01 -2.28 -5.29 16 24 C 0.18 0.91 13.03 180.76 2.36 3.26 16 25 N -0.34 -1.85 12.57 -61.25 -0.77 -2.62 16 26 C -0.11 1.14 7.39 31.12 0.23 1.37 16 27 C -0.07 0.21 9.52 22.49 0.21 0.42 16 28 C -0.12 0.35 9.41 22.44 0.21 0.56 16 29 C -0.11 0.23 9.43 22.49 0.21 0.44 16 30 C -0.12 0.32 8.65 22.24 0.19 0.51 16 31 H 0.40 -3.28 8.70 -74.06 -0.64 -3.92 16 32 H 0.11 0.00 7.96 -2.39 -0.02 -0.02 16 33 H -0.29 -0.65 7.11 99.48 0.71 0.06 16 34 H -0.30 -1.59 7.11 99.48 0.71 -0.88 16 35 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 36 H 0.14 -0.85 6.19 -2.91 -0.02 -0.87 16 37 H 0.15 -0.59 6.19 -2.91 -0.02 -0.61 16 38 H 0.13 0.69 7.64 -2.91 -0.02 0.66 16 39 H 0.41 -2.88 6.72 -92.71 -0.62 -3.51 16 40 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.09 -0.07 7.92 -2.39 -0.02 -0.09 16 42 H 0.14 -2.46 8.09 -2.39 -0.02 -2.48 16 43 H 0.10 -0.88 7.88 -2.39 -0.02 -0.90 16 44 H 0.26 -3.30 8.06 -2.92 -0.02 -3.32 16 45 H 0.23 -0.03 8.06 -2.91 -0.02 -0.05 16 46 H 0.12 -1.57 8.10 -2.39 -0.02 -1.58 16 47 H 0.10 -1.19 8.14 -2.39 -0.02 -1.21 16 48 H 0.15 -1.43 6.39 -2.91 -0.02 -1.45 16 49 H 0.16 -1.19 6.19 -2.91 -0.02 -1.21 16 50 H 0.15 -0.89 6.19 -2.91 -0.02 -0.91 16 51 H 0.15 -1.01 4.89 -2.91 -0.01 -1.02 16 Total: 0.00 -32.09 424.11 1.09 -31.01 By element: Atomic # 1 Polarization: -23.47 SS G_CDS: -0.22 Total: -23.69 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 7.90 Total: 13.32 kcal Atomic # 7 Polarization: -3.55 SS G_CDS: -6.66 Total: -10.21 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: -1.97 Total: -10.48 kcal Atomic # 14 Polarization: -2.00 SS G_CDS: 2.04 Total: 0.05 kcal Total: -32.09 1.09 -31.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13158362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.376 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds