Wall clock time and date at job start Sun Mar 7 2021 04:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46660 * 2 1 4 4 C 1.50698 * 109.46848 * 119.99672 * 2 1 3 5 5 C 1.38895 * 119.67535 * 244.97753 * 4 2 1 6 6 C 1.36477 * 120.61631 * 180.02562 * 5 4 2 7 7 C 1.40063 * 119.82694 * 0.02562 * 6 5 4 8 8 C 1.41600 * 133.37980 * 179.97438 * 7 6 5 9 9 C 1.35862 * 107.72768 * 180.02562 * 8 7 6 10 10 C 1.47060 * 125.42775 * 179.97438 * 9 8 7 11 11 O 1.21650 * 119.99509 * 0.02614 * 10 9 8 12 12 N 1.34771 * 120.00037 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99971 * 179.97438 * 12 10 9 14 14 H 1.09005 * 112.84724 * 336.19709 * 13 12 10 15 15 C 1.54049 * 113.68747 * 107.46997 * 13 12 10 16 16 C 1.53786 * 86.98426 * 89.12986 * 15 13 12 17 17 H 1.09002 * 113.61357 * 270.83585 * 16 15 13 18 18 C 1.53003 * 113.61503 * 140.01654 * 16 15 13 19 19 N 1.46504 * 109.46983 * 85.86203 * 18 16 15 20 20 C 1.34433 * 126.82011 * 124.99674 * 19 18 16 21 21 N 1.30832 * 108.07196 * 179.97438 * 20 19 18 22 22 C 1.33239 * 109.83428 * 0.02562 * 21 20 19 23 23 N 1.30719 * 108.94301 * 359.75174 * 22 21 20 24 24 C 1.53781 * 87.17350 * 25.42668 * 16 15 13 25 25 N 1.38149 * 109.14924 * 0.24311 * 9 8 7 26 26 C 1.37491 * 108.79068 * 359.60067 * 25 9 8 27 27 C 1.37716 * 119.67526 * 65.00320 * 4 2 1 28 28 H 0.96703 * 113.99838 * 60.00115 * 1 2 3 29 29 H 1.08994 * 109.47190 * 239.99691 * 2 1 3 30 30 H 1.48493 * 110.00153 * 60.00109 * 3 2 1 31 31 H 1.48508 * 109.99734 * 181.32073 * 3 2 1 32 32 H 1.08003 * 119.69249 * 0.05074 * 5 4 2 33 33 H 1.07997 * 120.08577 * 179.97438 * 6 5 4 34 34 H 1.07999 * 126.13469 * 0.02562 * 8 7 6 35 35 H 0.97002 * 120.00225 * 359.97438 * 12 10 9 36 36 H 1.08992 * 113.69868 * 334.61096 * 15 13 12 37 37 H 1.09000 * 113.61076 * 203.62855 * 15 13 12 38 38 H 1.09000 * 109.47107 * 205.86243 * 18 16 15 39 39 H 1.08997 * 109.47112 * 325.86394 * 18 16 15 40 40 H 1.07989 * 125.96131 * 0.02562 * 20 19 18 41 41 H 1.07993 * 125.52935 * 180.02562 * 22 21 20 42 42 H 1.08999 * 113.61567 * 89.07405 * 24 16 15 43 43 H 1.09000 * 113.61379 * 219.89528 * 24 16 15 44 44 H 0.96997 * 125.60909 * 179.72170 * 25 9 8 45 45 H 1.07999 * 120.09790 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.6418 -0.0024 2.1914 6 6 3.1060 -0.6265 3.3128 7 6 2.8658 -1.9938 3.4990 8 6 3.2040 -2.9098 4.5245 9 6 2.7059 -4.1245 4.1750 10 6 2.8347 -5.3582 4.9650 11 8 3.4274 -5.3410 6.0272 12 7 2.2963 -6.5077 4.5122 13 6 2.4252 -7.7368 5.2990 14 1 3.2795 -7.7185 5.9758 15 6 1.1130 -8.1805 5.9732 16 6 0.8147 -8.9704 4.6879 17 1 0.2770 -8.3932 3.9356 18 6 0.1885 -10.3428 4.9434 19 7 -1.2643 -10.2011 5.0687 20 6 -2.2016 -10.8535 4.3595 21 7 -3.3761 -10.4486 4.7699 22 6 -3.2298 -9.5419 5.7352 23 7 -1.9544 -9.3603 5.9570 24 6 2.3341 -9.0200 4.4564 25 7 2.0641 -4.0175 2.9562 26 6 2.1459 -2.7144 2.5256 27 6 1.6819 -2.0552 1.3910 28 1 -0.3933 0.4417 -0.7651 29 1 1.7924 -0.5138 -0.8899 30 1 1.5614 2.4679 1.2084 31 1 3.5346 1.7704 -0.0322 32 1 2.8283 1.0520 2.0500 33 1 3.6578 -0.0679 4.0542 34 1 3.7586 -2.6835 5.4231 35 1 1.8233 -6.5213 3.6654 36 1 0.4157 -7.3628 6.1551 37 1 1.2639 -8.8121 6.8487 38 1 0.4182 -11.0076 4.1107 39 1 0.5935 -10.7612 5.8648 40 1 -2.0173 -11.5848 3.5866 41 1 -4.0344 -9.0417 6.2535 42 1 2.8183 -9.8806 4.9180 43 1 2.6218 -8.8809 3.4143 44 1 1.6261 -4.7422 2.4830 45 1 1.1285 -2.5970 0.6382 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688106_13158378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:40:20 Heat of formation + Delta-G solvation = 123.888216 kcal Electronic energy + Delta-G solvation = -29657.286190 eV Core-core repulsion = 25452.093990 eV Total energy + Delta-G solvation = -4205.192200 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.03609 -42.73958 -41.29698 -39.65717 -38.78068 -37.02524 -35.59480 -34.08136 -33.32676 -32.16460 -31.23644 -30.48110 -29.30681 -27.02208 -26.97400 -25.07166 -24.13101 -23.21816 -22.93562 -22.50163 -21.98494 -21.30442 -20.58693 -19.65727 -18.48051 -18.38706 -18.02573 -17.35660 -17.13497 -16.93312 -16.47550 -16.38500 -16.22828 -15.74005 -15.55766 -15.41212 -15.09811 -15.06614 -14.86837 -14.76878 -14.66163 -14.35410 -14.24918 -14.00747 -13.72791 -13.41128 -13.27797 -13.01013 -12.70480 -12.45867 -12.25352 -12.18269 -11.91765 -11.84593 -11.53078 -11.32428 -10.96260 -10.95869 -10.77005 -10.66439 -10.36175 -10.31226 -9.36166 -8.85982 -4.97033 -0.37908 0.47007 0.64356 0.95638 1.25587 1.26505 1.64861 1.69235 1.82442 1.98503 2.02172 2.19850 2.70390 3.02408 3.16338 3.35205 3.35737 3.36487 3.45705 3.55115 3.57814 3.76833 3.83450 3.87788 3.93155 3.93608 4.12678 4.14978 4.25815 4.33436 4.33644 4.38980 4.40438 4.47592 4.51742 4.59821 4.71391 4.84859 4.85554 4.92412 4.93842 5.21074 5.26644 5.33685 5.36346 5.45440 5.49234 5.56659 5.77505 5.91094 6.12641 6.28144 6.57823 6.92551 7.11180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.072 4.072 3 Si 0.685 3.315 4 C -0.043 4.043 5 C -0.151 4.151 6 C -0.049 4.049 7 C -0.117 4.117 8 C -0.097 4.097 9 C 0.012 3.988 10 C 0.589 3.411 11 O -0.513 6.513 12 N -0.712 5.712 13 C 0.119 3.881 14 H 0.111 0.889 15 C -0.133 4.133 16 C -0.123 4.123 17 H 0.093 0.907 18 C 0.137 3.863 19 N -0.379 5.379 20 C 0.251 3.749 21 N -0.546 5.546 22 C 0.196 3.804 23 N -0.312 5.312 24 C -0.136 4.136 25 N -0.578 5.578 26 C 0.118 3.882 27 C -0.101 4.101 28 H 0.383 0.617 29 H 0.075 0.925 30 H -0.249 1.249 31 H -0.254 1.254 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.160 0.840 35 H 0.396 0.604 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.218 0.782 41 H 0.216 0.784 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.417 0.583 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 -1.994 -7.151 7.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.182 4.182 3 Si 0.586 3.414 4 C -0.045 4.045 5 C -0.170 4.170 6 C -0.067 4.067 7 C -0.122 4.122 8 C -0.124 4.124 9 C -0.097 4.097 10 C 0.376 3.624 11 O -0.387 6.387 12 N -0.363 5.363 13 C 0.013 3.987 14 H 0.129 0.871 15 C -0.172 4.172 16 C -0.143 4.143 17 H 0.111 0.889 18 C 0.015 3.985 19 N -0.170 5.170 20 C -0.046 4.046 21 N -0.273 5.273 22 C -0.106 4.106 23 N -0.139 5.139 24 C -0.174 4.174 25 N -0.183 5.183 26 C 0.008 3.992 27 C -0.121 4.121 28 H 0.230 0.770 29 H 0.093 0.907 30 H -0.174 1.174 31 H -0.179 1.179 32 H 0.139 0.861 33 H 0.150 0.850 34 H 0.177 0.823 35 H 0.230 0.770 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.234 0.766 41 H 0.233 0.767 42 H 0.123 0.877 43 H 0.098 0.902 44 H 0.255 0.745 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.073 -1.511 -4.980 5.602 hybrid contribution -0.431 -1.174 -0.723 1.445 sum 1.642 -2.686 -5.703 6.514 Atomic orbital electron populations 1.86506 1.17145 1.81813 1.49726 1.24706 0.85762 1.10574 0.97182 0.95407 0.80829 0.77873 0.87306 1.19019 0.97753 0.92834 0.94917 1.20376 1.02253 0.99112 0.95217 1.20331 0.97528 0.92093 0.96762 1.18198 1.03760 0.94231 0.95977 1.20978 1.01796 0.89846 0.99737 1.20048 1.05031 0.95909 0.88667 1.17153 0.78676 0.81684 0.84876 1.90888 1.41631 1.84731 1.21497 1.45523 1.57662 1.08543 1.24549 1.21940 0.99894 0.82725 0.94100 0.87070 1.23459 0.96829 1.00305 0.96614 1.22915 0.95803 0.95572 0.99974 0.88859 1.21908 0.74236 0.98331 1.03980 1.50597 1.07892 1.31007 1.27546 1.26131 0.83932 0.97309 0.97216 1.70565 1.24978 1.16129 1.15647 1.26082 0.93827 0.95639 0.95096 1.78100 1.06711 1.15231 1.13907 1.23353 0.94589 0.98108 1.01390 1.41861 1.49306 1.08775 1.18339 1.18275 1.00567 0.83890 0.96503 1.19834 1.02307 0.93838 0.96152 0.76984 0.90749 1.17414 1.17866 0.86123 0.84976 0.82280 0.77047 0.90449 0.88567 0.87737 0.88842 0.76585 0.76735 0.87749 0.90216 0.74533 0.85387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.02 12.80 -35.23 -0.45 -0.43 16 2 C -0.07 0.02 2.78 36.00 0.10 0.12 16 3 Si 0.68 -0.80 29.82 -169.99 -5.07 -5.87 16 4 C -0.04 -0.10 5.39 -104.57 -0.56 -0.66 16 5 C -0.15 -0.40 8.59 -39.97 -0.34 -0.74 16 6 C -0.05 -0.12 10.06 -39.53 -0.40 -0.52 16 7 C -0.12 -0.36 6.16 -106.93 -0.66 -1.02 16 8 C -0.10 -0.28 10.53 -39.15 -0.41 -0.69 16 9 C 0.01 0.02 6.96 -82.29 -0.57 -0.55 16 10 C 0.59 1.31 7.80 -12.69 -0.10 1.21 16 11 O -0.51 -2.99 16.44 5.23 0.09 -2.91 16 12 N -0.71 0.84 5.26 -54.06 -0.28 0.56 16 13 C 0.12 -0.19 4.33 -66.97 -0.29 -0.48 16 14 H 0.11 0.00 7.46 -51.93 -0.39 -0.39 16 15 C -0.13 0.18 7.45 -25.77 -0.19 -0.01 16 16 C -0.12 0.44 3.73 -89.80 -0.33 0.10 16 17 H 0.09 -0.26 8.14 -51.93 -0.42 -0.68 16 18 C 0.14 -0.53 6.37 -4.04 -0.03 -0.55 16 19 N -0.38 0.16 3.69 -62.63 -0.23 -0.08 16 20 C 0.25 -0.12 12.63 -90.65 -1.14 -1.27 16 21 N -0.55 -1.42 11.19 -15.83 -0.18 -1.60 16 22 C 0.20 0.41 13.03 -91.81 -1.20 -0.79 16 23 N -0.31 -0.73 12.57 29.29 0.37 -0.36 16 24 C -0.14 0.62 7.39 -25.92 -0.19 0.43 16 25 N -0.58 -0.02 6.07 -7.35 -0.04 -0.07 16 26 C 0.12 0.26 7.25 -83.97 -0.61 -0.35 16 27 C -0.10 -0.19 9.69 -39.42 -0.38 -0.57 16 28 H 0.38 -1.95 8.74 45.56 0.40 -1.55 16 29 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 30 H -0.25 -0.52 7.04 56.52 0.40 -0.12 16 31 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 32 H 0.12 0.23 4.81 -52.48 -0.25 -0.02 16 33 H 0.13 0.05 8.06 -52.49 -0.42 -0.38 16 34 H 0.16 0.33 8.06 -52.49 -0.42 -0.09 16 35 H 0.40 -1.45 7.76 -40.82 -0.32 -1.77 16 36 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 37 H 0.10 -0.14 7.92 -51.93 -0.41 -0.55 16 38 H 0.10 -0.70 8.09 -51.93 -0.42 -1.12 16 39 H 0.09 -0.37 7.88 -51.93 -0.41 -0.78 16 40 H 0.22 -1.06 8.06 -52.49 -0.42 -1.49 16 41 H 0.22 -0.16 8.06 -52.49 -0.42 -0.58 16 42 H 0.10 -0.59 8.10 -51.93 -0.42 -1.01 16 43 H 0.08 -0.40 8.14 -51.93 -0.42 -0.83 16 44 H 0.42 -1.34 8.12 -40.82 -0.33 -1.67 16 45 H 0.13 0.02 8.06 -52.49 -0.42 -0.41 16 LS Contribution 383.68 15.07 5.78 5.78 Total: 0.00 -12.68 383.68 -12.88 -25.56 By element: Atomic # 1 Polarization: -8.71 SS G_CDS: -5.55 Total: -14.26 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -7.31 Total: -6.34 kcal Atomic # 7 Polarization: -1.18 SS G_CDS: -0.37 Total: -1.55 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: -0.37 Total: -3.33 kcal Atomic # 14 Polarization: -0.80 SS G_CDS: -5.07 Total: -5.87 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -12.68 -12.88 -25.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13158378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.450 kcal (2) G-P(sol) polarization free energy of solvation -12.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds