Wall clock time and date at job start Sun Mar 7 2021 04:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46660 * 2 1 4 4 C 1.50698 * 109.46848 * 119.99672 * 2 1 3 5 5 C 1.38895 * 119.67535 * 244.97753 * 4 2 1 6 6 C 1.36477 * 120.61631 * 180.02562 * 5 4 2 7 7 C 1.40063 * 119.82694 * 0.02562 * 6 5 4 8 8 C 1.41600 * 133.37980 * 179.97438 * 7 6 5 9 9 C 1.35862 * 107.72768 * 180.02562 * 8 7 6 10 10 C 1.47060 * 125.42775 * 179.97438 * 9 8 7 11 11 O 1.21650 * 119.99509 * 0.02614 * 10 9 8 12 12 N 1.34771 * 120.00037 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99971 * 179.97438 * 12 10 9 14 14 H 1.09005 * 112.84724 * 336.19709 * 13 12 10 15 15 C 1.54049 * 113.68747 * 107.46997 * 13 12 10 16 16 C 1.53786 * 86.98426 * 89.12986 * 15 13 12 17 17 H 1.09002 * 113.61357 * 270.83585 * 16 15 13 18 18 C 1.53003 * 113.61503 * 140.01654 * 16 15 13 19 19 N 1.46504 * 109.46983 * 85.86203 * 18 16 15 20 20 C 1.34433 * 126.82011 * 124.99674 * 19 18 16 21 21 N 1.30832 * 108.07196 * 179.97438 * 20 19 18 22 22 C 1.33239 * 109.83428 * 0.02562 * 21 20 19 23 23 N 1.30719 * 108.94301 * 359.75174 * 22 21 20 24 24 C 1.53781 * 87.17350 * 25.42668 * 16 15 13 25 25 N 1.38149 * 109.14924 * 0.24311 * 9 8 7 26 26 C 1.37491 * 108.79068 * 359.60067 * 25 9 8 27 27 C 1.37716 * 119.67526 * 65.00320 * 4 2 1 28 28 H 0.96703 * 113.99838 * 60.00115 * 1 2 3 29 29 H 1.08994 * 109.47190 * 239.99691 * 2 1 3 30 30 H 1.48493 * 110.00153 * 60.00109 * 3 2 1 31 31 H 1.48508 * 109.99734 * 181.32073 * 3 2 1 32 32 H 1.08003 * 119.69249 * 0.05074 * 5 4 2 33 33 H 1.07997 * 120.08577 * 179.97438 * 6 5 4 34 34 H 1.07999 * 126.13469 * 0.02562 * 8 7 6 35 35 H 0.97002 * 120.00225 * 359.97438 * 12 10 9 36 36 H 1.08992 * 113.69868 * 334.61096 * 15 13 12 37 37 H 1.09000 * 113.61076 * 203.62855 * 15 13 12 38 38 H 1.09000 * 109.47107 * 205.86243 * 18 16 15 39 39 H 1.08997 * 109.47112 * 325.86394 * 18 16 15 40 40 H 1.07989 * 125.96131 * 0.02562 * 20 19 18 41 41 H 1.07993 * 125.52935 * 180.02562 * 22 21 20 42 42 H 1.08999 * 113.61567 * 89.07405 * 24 16 15 43 43 H 1.09000 * 113.61379 * 219.89528 * 24 16 15 44 44 H 0.96997 * 125.60909 * 179.72170 * 25 9 8 45 45 H 1.07999 * 120.09790 * 359.97438 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.6418 -0.0024 2.1914 6 6 3.1060 -0.6265 3.3128 7 6 2.8658 -1.9938 3.4990 8 6 3.2040 -2.9098 4.5245 9 6 2.7059 -4.1245 4.1750 10 6 2.8347 -5.3582 4.9650 11 8 3.4274 -5.3410 6.0272 12 7 2.2963 -6.5077 4.5122 13 6 2.4252 -7.7368 5.2990 14 1 3.2795 -7.7185 5.9758 15 6 1.1130 -8.1805 5.9732 16 6 0.8147 -8.9704 4.6879 17 1 0.2770 -8.3932 3.9356 18 6 0.1885 -10.3428 4.9434 19 7 -1.2643 -10.2011 5.0687 20 6 -2.2016 -10.8535 4.3595 21 7 -3.3761 -10.4486 4.7699 22 6 -3.2298 -9.5419 5.7352 23 7 -1.9544 -9.3603 5.9570 24 6 2.3341 -9.0200 4.4564 25 7 2.0641 -4.0175 2.9562 26 6 2.1459 -2.7144 2.5256 27 6 1.6819 -2.0552 1.3910 28 1 -0.3933 0.4417 -0.7651 29 1 1.7924 -0.5138 -0.8899 30 1 1.5614 2.4679 1.2084 31 1 3.5346 1.7704 -0.0322 32 1 2.8283 1.0520 2.0500 33 1 3.6578 -0.0679 4.0542 34 1 3.7586 -2.6835 5.4231 35 1 1.8233 -6.5213 3.6654 36 1 0.4157 -7.3628 6.1551 37 1 1.2639 -8.8121 6.8487 38 1 0.4182 -11.0076 4.1107 39 1 0.5935 -10.7612 5.8648 40 1 -2.0173 -11.5848 3.5866 41 1 -4.0344 -9.0417 6.2535 42 1 2.8183 -9.8806 4.9180 43 1 2.6218 -8.8809 3.4143 44 1 1.6261 -4.7422 2.4830 45 1 1.1285 -2.5970 0.6382 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_13158378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:40:19 Heat of formation + Delta-G solvation = 122.134047 kcal Electronic energy + Delta-G solvation = -29657.362256 eV Core-core repulsion = 25452.093990 eV Total energy + Delta-G solvation = -4205.268266 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.00272 -42.86377 -41.29059 -39.68799 -38.84868 -37.03368 -35.56283 -34.08827 -33.44794 -32.17232 -31.33394 -30.60493 -29.18073 -27.05865 -26.77156 -25.05419 -24.15483 -23.32479 -22.87217 -22.44033 -22.09911 -21.41132 -20.48236 -19.72875 -18.43246 -18.27464 -18.08142 -17.40612 -17.15733 -16.82891 -16.61677 -16.44179 -16.16679 -15.74022 -15.53002 -15.36733 -15.15525 -15.10618 -14.88238 -14.84702 -14.63777 -14.47118 -14.10873 -14.04816 -13.54905 -13.50039 -13.18182 -12.88108 -12.82167 -12.32338 -12.30796 -12.27628 -11.90524 -11.81175 -11.54145 -11.32642 -11.10656 -10.98749 -10.80737 -10.58518 -10.35210 -10.27430 -9.50827 -8.98799 -4.91241 -0.53090 0.30956 0.69597 0.79276 1.31077 1.44763 1.59788 1.67859 1.82005 1.99774 2.01842 2.03149 2.56587 3.26385 3.36075 3.38657 3.44127 3.51081 3.52421 3.60109 3.71310 3.79745 3.84265 3.92755 4.07910 4.10238 4.16890 4.18989 4.27528 4.30513 4.40346 4.52907 4.55813 4.60497 4.71970 4.72474 4.75995 4.81971 4.89950 4.98542 5.04021 5.11885 5.20102 5.30058 5.34553 5.39964 5.43919 5.44620 5.78653 5.94498 6.11570 6.29642 6.82590 6.92541 7.12723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.075 4.075 3 Si 0.773 3.227 4 C -0.061 4.061 5 C -0.166 4.166 6 C -0.060 4.060 7 C -0.136 4.136 8 C -0.118 4.118 9 C 0.014 3.986 10 C 0.589 3.411 11 O -0.557 6.557 12 N -0.694 5.694 13 C 0.107 3.893 14 H 0.093 0.907 15 C -0.138 4.138 16 C -0.111 4.111 17 H 0.090 0.910 18 C 0.130 3.870 19 N -0.378 5.378 20 C 0.256 3.744 21 N -0.585 5.585 22 C 0.182 3.818 23 N -0.344 5.344 24 C -0.112 4.112 25 N -0.560 5.560 26 C 0.111 3.889 27 C -0.102 4.102 28 H 0.404 0.596 29 H 0.100 0.900 30 H -0.299 1.299 31 H -0.289 1.289 32 H 0.120 0.880 33 H 0.143 0.857 34 H 0.157 0.843 35 H 0.410 0.590 36 H 0.046 0.954 37 H 0.094 0.906 38 H 0.145 0.855 39 H 0.097 0.903 40 H 0.260 0.740 41 H 0.227 0.773 42 H 0.123 0.877 43 H 0.096 0.904 44 H 0.433 0.567 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 -3.912 -9.675 10.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.185 4.185 3 Si 0.680 3.320 4 C -0.063 4.063 5 C -0.185 4.185 6 C -0.078 4.078 7 C -0.141 4.141 8 C -0.145 4.145 9 C -0.095 4.095 10 C 0.376 3.624 11 O -0.435 6.435 12 N -0.345 5.345 13 C 0.002 3.998 14 H 0.111 0.889 15 C -0.176 4.176 16 C -0.131 4.131 17 H 0.108 0.892 18 C 0.010 3.990 19 N -0.169 5.169 20 C -0.040 4.040 21 N -0.313 5.313 22 C -0.120 4.120 23 N -0.172 5.172 24 C -0.150 4.150 25 N -0.166 5.166 26 C 0.000 4.000 27 C -0.122 4.122 28 H 0.256 0.744 29 H 0.118 0.882 30 H -0.227 1.227 31 H -0.217 1.217 32 H 0.138 0.862 33 H 0.161 0.839 34 H 0.174 0.826 35 H 0.247 0.753 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.163 0.837 39 H 0.115 0.885 40 H 0.275 0.725 41 H 0.243 0.757 42 H 0.141 0.859 43 H 0.115 0.885 44 H 0.274 0.726 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.885 -3.474 -7.580 8.549 hybrid contribution -0.368 -0.565 0.111 0.683 sum 1.518 -4.040 -7.469 8.626 Atomic orbital electron populations 1.86452 1.17040 1.82377 1.51493 1.24783 0.85973 1.10808 0.96932 0.94534 0.77346 0.75539 0.84566 1.19428 0.97654 0.93392 0.95788 1.20546 1.02881 0.99313 0.95752 1.20538 0.97797 0.92267 0.97209 1.18381 1.04532 0.94664 0.96511 1.21089 1.02728 0.90571 1.00085 1.19984 1.04884 0.95537 0.89143 1.17218 0.78427 0.82438 0.84311 1.90864 1.43853 1.85393 1.23348 1.45413 1.56391 1.07843 1.24833 1.22085 0.99031 0.83753 0.94954 0.88927 1.23443 0.96324 0.99893 0.97984 1.22796 0.96681 0.95479 0.98109 0.89222 1.22264 0.72313 0.98608 1.05842 1.50779 1.09042 1.30272 1.26765 1.26911 0.83065 0.96953 0.97063 1.70541 1.27002 1.17168 1.16615 1.26410 0.94273 0.95941 0.95418 1.78025 1.07079 1.16709 1.15419 1.23284 0.93450 0.96474 1.01821 1.41737 1.48551 1.08731 1.17567 1.18431 1.00515 0.84465 0.96595 1.20059 1.02090 0.93811 0.96270 0.74443 0.88234 1.22715 1.21666 0.86216 0.83899 0.82572 0.75342 0.93476 0.88750 0.83737 0.88528 0.72488 0.75673 0.85879 0.88533 0.72583 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.74 12.80 -148.98 -1.91 -1.16 16 2 C -0.08 0.11 2.78 71.24 0.20 0.31 16 3 Si 0.77 -1.63 29.82 68.60 2.05 0.41 16 4 C -0.06 -0.28 5.39 -19.83 -0.11 -0.39 16 5 C -0.17 -1.10 8.59 22.02 0.19 -0.91 16 6 C -0.06 -0.40 10.06 22.30 0.22 -0.17 16 7 C -0.14 -1.04 6.16 -21.36 -0.13 -1.17 16 8 C -0.12 -0.91 10.53 22.55 0.24 -0.67 16 9 C 0.01 0.07 6.96 39.91 0.28 0.35 16 10 C 0.59 3.39 7.80 86.56 0.68 4.06 16 11 O -0.56 -7.80 16.44 -4.19 -0.07 -7.87 16 12 N -0.69 1.51 5.26 -443.20 -2.33 -0.83 16 13 C 0.11 -0.33 4.33 45.61 0.20 -0.14 16 14 H 0.09 0.11 7.46 -2.38 -0.02 0.09 16 15 C -0.14 0.28 7.45 31.21 0.23 0.51 16 16 C -0.11 0.94 3.73 -10.26 -0.04 0.90 16 17 H 0.09 -0.64 8.14 -2.39 -0.02 -0.66 16 18 C 0.13 -1.28 6.37 86.38 0.55 -0.73 16 19 N -0.38 0.70 3.69 -352.06 -1.30 -0.59 16 20 C 0.26 -0.63 12.63 180.36 2.28 1.65 16 21 N -0.59 -3.03 11.19 -204.01 -2.28 -5.31 16 22 C 0.18 0.93 13.03 180.76 2.36 3.29 16 23 N -0.34 -1.83 12.57 -61.25 -0.77 -2.60 16 24 C -0.11 1.26 7.39 31.12 0.23 1.49 16 25 N -0.56 -0.02 6.07 -177.18 -1.08 -1.10 16 26 C 0.11 0.52 7.25 39.13 0.28 0.80 16 27 C -0.10 -0.33 9.69 22.37 0.22 -0.11 16 28 H 0.40 -4.83 8.74 -74.06 -0.65 -5.47 16 29 H 0.10 -0.63 7.96 -2.39 -0.02 -0.65 16 30 H -0.30 -1.78 7.04 99.48 0.70 -1.08 16 31 H -0.29 -1.03 7.11 99.48 0.71 -0.32 16 32 H 0.12 0.68 4.81 -2.91 -0.01 0.66 16 33 H 0.14 0.41 8.06 -2.91 -0.02 0.39 16 34 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 35 H 0.41 -3.36 7.76 -92.71 -0.72 -4.08 16 36 H 0.05 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.09 -0.18 7.92 -2.39 -0.02 -0.19 16 38 H 0.14 -2.54 8.09 -2.39 -0.02 -2.56 16 39 H 0.10 -0.95 7.88 -2.39 -0.02 -0.97 16 40 H 0.26 -3.34 8.06 -2.92 -0.02 -3.37 16 41 H 0.23 0.04 8.06 -2.91 -0.02 0.01 16 42 H 0.12 -1.75 8.10 -2.39 -0.02 -1.77 16 43 H 0.10 -1.31 8.14 -2.39 -0.02 -1.33 16 44 H 0.43 -3.22 8.12 -92.71 -0.75 -3.97 16 45 H 0.15 -0.20 8.06 -2.91 -0.02 -0.23 16 Total: 0.00 -33.36 383.68 -0.84 -34.20 By element: Atomic # 1 Polarization: -23.21 SS G_CDS: -1.01 Total: -24.22 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 7.87 Total: 9.07 kcal Atomic # 7 Polarization: -2.67 SS G_CDS: -7.76 Total: -10.43 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -1.98 Total: -9.03 kcal Atomic # 14 Polarization: -1.63 SS G_CDS: 2.05 Total: 0.41 kcal Total: -33.36 -0.84 -34.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13158378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.331 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds