Wall clock time and date at job start Sun Mar 7 2021 04:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86305 * 109.47026 * 2 1 4 4 C 1.50702 * 109.47297 * 239.99963 * 2 1 3 5 5 C 1.38323 * 119.87499 * 299.99962 * 4 2 1 6 6 C 1.38020 * 120.11986 * 179.97438 * 5 4 2 7 7 C 1.39345 * 119.87567 * 0.02562 * 6 5 4 8 8 C 1.48392 * 120.11965 * 180.02562 * 7 6 5 9 9 C 1.39311 * 120.11823 * 56.52166 * 8 7 6 10 10 C 1.50701 * 120.06424 * 0.02562 * 9 8 7 11 11 C 1.50693 * 109.47008 * 80.07294 * 10 9 8 12 12 O 1.21275 * 120.00316 * 5.82546 * 11 10 9 13 13 N 1.34782 * 119.99751 * 185.82354 * 11 10 9 14 14 C 1.46507 * 119.99833 * 179.97438 * 13 11 10 15 15 H 1.09001 * 112.84831 * 336.20167 * 14 13 11 16 16 C 1.53783 * 113.60975 * 107.50344 * 14 13 11 17 17 C 1.53786 * 87.07906 * 89.11956 * 16 14 13 18 18 H 1.08999 * 113.60939 * 270.88301 * 17 16 14 19 19 C 1.52997 * 113.61754 * 139.98112 * 17 16 14 20 20 N 1.46496 * 109.47386 * 87.49683 * 19 17 16 21 21 C 1.34427 * 126.82455 * 124.71071 * 20 19 17 22 22 N 1.30829 * 108.08166 * 179.89766 * 21 20 19 23 23 C 1.33247 * 109.82432 * 0.37831 * 22 21 20 24 24 N 1.30707 * 108.94992 * 359.76646 * 23 22 21 25 25 C 1.53779 * 113.61062 * 205.00115 * 14 13 11 26 26 C 1.38046 * 119.87223 * 179.72676 * 9 8 7 27 27 C 1.38295 * 120.12189 * 0.22974 * 26 9 8 28 28 C 1.38344 * 120.24656 * 359.97438 * 27 26 9 29 29 C 1.37997 * 120.11740 * 0.04615 * 28 27 26 30 30 C 1.39339 * 119.75614 * 0.27222 * 7 6 5 31 31 C 1.38015 * 119.87767 * 359.43092 * 30 7 6 32 32 H 0.96700 * 113.99768 * 60.00326 * 1 2 3 33 33 H 1.09004 * 109.46750 * 119.99782 * 2 1 3 34 34 H 1.48496 * 109.99823 * 298.68118 * 3 2 1 35 35 H 1.48499 * 110.00073 * 59.99840 * 3 2 1 36 36 H 1.07999 * 119.93909 * 0.02562 * 5 4 2 37 37 H 1.07998 * 120.06353 * 180.02562 * 6 5 4 38 38 H 1.09000 * 109.47106 * 320.07086 * 10 9 8 39 39 H 1.09002 * 109.46908 * 200.07158 * 10 9 8 40 40 H 0.96990 * 119.99975 * 0.02562 * 13 11 10 41 41 H 1.08997 * 113.60905 * 203.66268 * 16 14 13 42 42 H 1.08997 * 113.61713 * 334.57120 * 16 14 13 43 43 H 1.09000 * 109.47211 * 207.50331 * 19 17 16 44 44 H 1.09004 * 109.46693 * 327.49870 * 19 17 16 45 45 H 1.08005 * 125.95640 * 0.03485 * 21 20 19 46 46 H 1.08004 * 125.51761 * 179.72678 * 23 22 21 47 47 H 1.08994 * 113.61690 * 25.43592 * 25 14 13 48 48 H 1.09009 * 113.60872 * 156.33715 * 25 14 13 49 49 H 1.08006 * 119.93612 * 180.25168 * 26 9 8 50 50 H 1.08003 * 119.87659 * 180.02562 * 27 26 9 51 51 H 1.07992 * 119.93984 * 180.02562 * 28 27 26 52 52 H 1.08004 * 120.06090 * 179.97438 * 29 28 27 53 53 H 1.08005 * 120.05579 * 179.72305 * 30 7 6 54 54 H 1.08001 * 119.93957 * 180.31831 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.5957 -2.0347 -1.4468 6 6 2.0526 -2.6901 -2.5722 7 6 2.8538 -2.0153 -3.4911 8 6 3.3476 -2.7146 -4.7033 9 6 2.4459 -3.3069 -5.5846 10 6 0.9657 -3.2387 -5.3095 11 6 0.4372 -1.8933 -5.7356 12 8 1.1634 -1.1110 -6.3112 13 7 -0.8428 -1.5596 -5.4771 14 6 -1.3566 -0.2514 -5.8908 15 1 -0.5703 0.4945 -6.0075 16 6 -2.3258 -0.3193 -7.0829 17 6 -3.4547 -0.4965 -6.0538 18 1 -3.6460 -1.5368 -5.7904 19 6 -4.7297 0.2734 -6.4038 20 7 -5.5777 -0.5528 -7.2666 21 6 -6.8594 -0.8941 -7.0480 22 7 -7.2587 -1.6352 -8.0496 23 6 -6.2619 -1.7949 -8.9192 24 7 -5.2113 -1.1507 -8.4835 25 6 -2.5485 0.2361 -5.0503 26 6 2.9104 -3.9512 -6.7137 27 6 4.2683 -4.0133 -6.9681 28 6 5.1685 -3.4305 -6.0940 29 6 4.7151 -2.7842 -4.9621 30 6 3.1940 -0.6832 -3.2649 31 6 2.7265 -0.0358 -2.1392 32 1 -0.3933 0.4417 -0.7651 33 1 1.7923 -0.5138 0.8901 34 1 1.5878 2.4585 -1.2242 35 1 1.5614 2.4679 1.2085 36 1 0.9742 -2.5566 -0.7341 37 1 1.7895 -3.7240 -2.7404 38 1 0.7876 -3.3780 -4.2433 39 1 0.4557 -4.0231 -5.8687 40 1 -1.4236 -2.1851 -5.0165 41 1 -2.3908 0.6116 -7.6462 42 1 -2.1745 -1.1909 -7.7195 43 1 -5.2699 0.5168 -5.4890 44 1 -4.4667 1.1932 -6.9262 45 1 -7.4561 -0.6050 -6.1955 46 1 -6.3135 -2.3648 -9.8351 47 1 -2.5770 -0.1871 -4.0464 48 1 -2.6744 1.3189 -5.0581 49 1 2.2120 -4.4073 -7.3998 50 1 4.6274 -4.5180 -7.8528 51 1 6.2278 -3.4816 -6.2977 52 1 5.4186 -2.3299 -4.2802 53 1 3.8184 -0.1568 -3.9717 54 1 2.9853 0.9982 -1.9655 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_13158394.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:40:24 Heat of formation + Delta-G solvation = 114.066725 kcal Electronic energy + Delta-G solvation = -38042.702394 eV Core-core repulsion = 33334.982695 eV Total energy + Delta-G solvation = -4707.719699 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 405.184 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.98732 -41.65727 -40.90216 -39.89736 -39.16673 -37.66909 -35.40233 -34.40283 -33.85415 -33.31231 -32.16366 -31.98040 -30.74347 -29.48029 -28.38192 -26.75086 -26.58654 -24.68604 -24.01438 -23.46400 -22.93906 -22.86196 -22.38073 -21.89845 -21.33041 -20.33339 -18.65245 -18.43612 -18.05517 -17.92161 -17.18955 -17.00572 -16.79761 -16.73273 -16.34890 -16.23183 -16.07245 -15.91338 -15.60567 -15.49833 -15.45654 -15.22851 -14.89668 -14.82124 -14.65988 -14.45692 -14.18076 -14.10176 -13.93854 -13.67528 -13.55998 -13.30109 -13.27551 -13.18438 -12.97474 -12.82248 -12.39624 -12.33121 -12.22001 -12.05975 -11.78554 -11.74098 -11.64381 -11.29112 -11.03089 -10.97599 -10.79691 -10.63595 -10.56977 -10.16528 -10.08304 -9.93944 -9.76104 -9.23360 -4.93751 -0.10271 0.38624 0.38948 0.60186 0.70458 1.30101 1.44750 1.57878 1.59248 1.92062 2.00796 2.11101 2.61772 2.86168 3.28790 3.40001 3.44013 3.51827 3.53158 3.62152 3.64520 3.74264 3.75496 3.86921 3.93254 3.95280 3.97058 4.02812 4.11113 4.16765 4.20255 4.28067 4.36948 4.41847 4.47380 4.51512 4.56452 4.57028 4.61549 4.66326 4.67764 4.71806 4.81711 4.86627 4.97205 4.97444 5.00761 5.02534 5.07773 5.14745 5.32336 5.34149 5.40829 5.45589 5.47533 5.51756 5.56541 5.57647 5.64688 5.93579 5.94560 6.03579 6.48011 6.48462 7.13491 7.22271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.073 4.073 3 Si 0.749 3.251 4 C -0.117 4.117 5 C -0.090 4.090 6 C -0.115 4.115 7 C -0.042 4.042 8 C -0.050 4.050 9 C -0.065 4.065 10 C -0.109 4.109 11 C 0.519 3.481 12 O -0.571 6.571 13 N -0.703 5.703 14 C 0.113 3.887 15 H 0.078 0.922 16 C -0.137 4.137 17 C -0.107 4.107 18 H 0.091 0.909 19 C 0.130 3.870 20 N -0.378 5.378 21 C 0.256 3.744 22 N -0.585 5.585 23 C 0.183 3.817 24 N -0.344 5.344 25 C -0.116 4.116 26 C -0.121 4.121 27 C -0.126 4.126 28 C -0.125 4.125 29 C -0.118 4.118 30 C -0.108 4.108 31 C -0.116 4.116 32 H 0.385 0.615 33 H 0.128 0.872 34 H -0.288 1.288 35 H -0.300 1.300 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.413 0.587 41 H 0.086 0.914 42 H 0.048 0.952 43 H 0.143 0.857 44 H 0.093 0.907 45 H 0.258 0.742 46 H 0.229 0.771 47 H 0.094 0.906 48 H 0.115 0.885 49 H 0.134 0.866 50 H 0.139 0.861 51 H 0.141 0.859 52 H 0.133 0.867 53 H 0.120 0.880 54 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.626 -0.486 5.196 5.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.183 4.183 3 Si 0.656 3.344 4 C -0.117 4.117 5 C -0.108 4.108 6 C -0.132 4.132 7 C -0.042 4.042 8 C -0.050 4.050 9 C -0.066 4.066 10 C -0.148 4.148 11 C 0.307 3.693 12 O -0.449 6.449 13 N -0.355 5.355 14 C 0.007 3.993 15 H 0.096 0.904 16 C -0.176 4.176 17 C -0.126 4.126 18 H 0.109 0.891 19 C 0.010 3.990 20 N -0.168 5.168 21 C -0.040 4.040 22 N -0.313 5.313 23 C -0.120 4.120 24 N -0.172 5.172 25 C -0.154 4.154 26 C -0.139 4.139 27 C -0.144 4.144 28 C -0.143 4.143 29 C -0.136 4.136 30 C -0.126 4.126 31 C -0.133 4.133 32 H 0.234 0.766 33 H 0.146 0.854 34 H -0.214 1.214 35 H -0.229 1.229 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.249 0.751 41 H 0.105 0.895 42 H 0.067 0.933 43 H 0.161 0.839 44 H 0.112 0.888 45 H 0.274 0.726 46 H 0.245 0.755 47 H 0.113 0.887 48 H 0.133 0.867 49 H 0.152 0.848 50 H 0.157 0.843 51 H 0.159 0.841 52 H 0.151 0.849 53 H 0.138 0.862 54 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.192 0.547 4.973 5.007 hybrid contribution -1.145 -0.283 -0.791 1.420 sum -0.953 0.264 4.182 4.298 Atomic orbital electron populations 1.86571 1.18124 1.80207 1.50098 1.25062 0.83616 1.10878 0.98697 0.94062 0.91010 0.73054 0.76286 1.20348 0.99153 0.95341 0.96853 1.21059 0.98893 0.93745 0.97130 1.21374 0.97581 1.00423 0.93867 1.18854 0.97921 0.93656 0.93759 1.18746 0.93430 0.98225 0.94566 1.19434 0.93956 0.98085 0.95096 1.20911 0.92821 0.95235 1.05831 1.20826 0.81618 0.89000 0.77857 1.90719 1.58185 1.53302 1.42734 1.45558 1.11697 1.18007 1.60248 1.21819 0.95632 0.85474 0.96393 0.90374 1.23373 0.95723 1.02052 0.96465 1.22739 0.92565 1.00150 0.97147 0.89063 1.22244 0.91039 0.92042 0.93680 1.50763 1.11049 1.38641 1.16393 1.26896 0.84780 0.92927 0.99404 1.70549 1.32718 1.22731 1.05300 1.26429 0.86083 0.98658 1.00781 1.78025 1.24587 1.16473 0.98108 1.23271 0.91576 1.02331 0.98254 1.21213 0.96475 0.99632 0.96534 1.21472 0.93218 0.99616 1.00067 1.21382 1.00880 0.97725 0.94318 1.21396 0.94490 0.99602 0.98068 1.21222 1.00053 0.93982 0.97384 1.21054 0.98143 1.00013 0.94106 0.76604 0.85404 1.21425 1.22851 0.84378 0.84194 0.85770 0.85799 0.75053 0.89519 0.93332 0.83937 0.88830 0.72595 0.75518 0.88700 0.86718 0.84833 0.84315 0.84125 0.84942 0.86181 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.33 12.76 -148.98 -1.90 -1.57 16 2 C -0.07 0.17 2.82 71.24 0.20 0.37 16 3 Si 0.75 -1.57 29.78 68.60 2.04 0.48 16 4 C -0.12 0.13 5.40 -19.83 -0.11 0.02 16 5 C -0.09 0.14 9.59 22.24 0.21 0.35 16 6 C -0.11 0.08 7.84 22.48 0.18 0.25 16 7 C -0.04 -0.12 4.73 -20.04 -0.09 -0.22 16 8 C -0.05 -0.24 5.38 -20.04 -0.11 -0.34 16 9 C -0.07 -0.25 4.39 -19.65 -0.09 -0.34 16 10 C -0.11 0.10 5.31 29.10 0.15 0.26 16 11 C 0.52 2.03 7.60 87.65 0.67 2.70 16 12 O -0.57 -7.72 15.64 -3.01 -0.05 -7.77 16 13 N -0.70 1.44 5.26 -440.03 -2.32 -0.88 16 14 C 0.11 -0.18 4.32 45.52 0.20 0.02 16 15 H 0.08 0.32 7.46 -2.39 -0.02 0.31 16 16 C -0.14 0.11 7.43 31.12 0.23 0.34 16 17 C -0.11 0.75 3.73 -10.27 -0.04 0.71 16 18 H 0.09 -0.51 8.14 -2.39 -0.02 -0.53 16 19 C 0.13 -1.09 6.39 86.38 0.55 -0.54 16 20 N -0.38 0.39 3.69 -352.07 -1.30 -0.91 16 21 C 0.26 -0.46 12.63 180.36 2.28 1.82 16 22 N -0.58 -3.21 11.19 -204.00 -2.28 -5.49 16 23 C 0.18 0.95 13.03 180.76 2.36 3.30 16 24 N -0.34 -1.95 12.57 -61.24 -0.77 -2.71 16 25 C -0.12 1.07 7.39 31.12 0.23 1.30 16 26 C -0.12 -0.44 9.66 22.24 0.21 -0.23 16 27 C -0.13 -0.38 10.04 22.31 0.22 -0.16 16 28 C -0.13 -0.37 10.03 22.24 0.22 -0.14 16 29 C -0.12 -0.48 9.62 22.48 0.22 -0.27 16 30 C -0.11 -0.35 9.62 22.48 0.22 -0.14 16 31 C -0.12 -0.03 8.65 22.24 0.19 0.16 16 32 H 0.38 -2.29 8.70 -74.06 -0.64 -2.93 16 33 H 0.13 -0.52 7.96 -2.38 -0.02 -0.54 16 34 H -0.29 -0.70 7.11 99.48 0.71 0.01 16 35 H -0.30 -1.59 7.11 99.48 0.71 -0.88 16 36 H 0.14 -0.51 8.06 -2.91 -0.02 -0.54 16 37 H 0.14 -0.56 7.07 -2.91 -0.02 -0.58 16 38 H 0.12 -0.59 4.85 -2.39 -0.01 -0.60 16 39 H 0.12 -0.66 8.01 -2.39 -0.02 -0.68 16 40 H 0.41 -3.16 8.70 -92.72 -0.81 -3.97 16 41 H 0.09 0.00 7.90 -2.39 -0.02 -0.02 16 42 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.14 -2.27 8.09 -2.39 -0.02 -2.29 16 44 H 0.09 -0.76 7.84 -2.38 -0.02 -0.78 16 45 H 0.26 -3.11 8.06 -2.91 -0.02 -3.13 16 46 H 0.23 -0.03 8.06 -2.91 -0.02 -0.05 16 47 H 0.09 -1.09 8.14 -2.39 -0.02 -1.11 16 48 H 0.11 -1.33 8.10 -2.38 -0.02 -1.35 16 49 H 0.13 0.03 8.04 -2.91 -0.02 0.01 16 50 H 0.14 -0.14 8.06 -2.91 -0.02 -0.16 16 51 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 52 H 0.13 0.18 8.06 -2.91 -0.02 0.16 16 53 H 0.12 0.47 8.06 -2.91 -0.02 0.44 16 54 H 0.14 -0.37 4.86 -2.91 -0.01 -0.38 16 Total: 0.00 -30.26 449.13 1.07 -29.19 By element: Atomic # 1 Polarization: -19.12 SS G_CDS: -0.46 Total: -19.58 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 8.11 Total: 9.24 kcal Atomic # 7 Polarization: -3.32 SS G_CDS: -6.67 Total: -9.99 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -1.95 Total: -9.34 kcal Atomic # 14 Polarization: -1.57 SS G_CDS: 2.04 Total: 0.48 kcal Total: -30.26 1.07 -29.19 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13158394.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.253 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds