Wall clock time and date at job start Sun Mar 7 2021 04:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86305 * 109.46872 * 2 1 4 4 C 1.50698 * 109.47099 * 119.99469 * 2 1 3 5 5 C 1.34711 * 125.66329 * 65.00198 * 4 2 1 6 6 C 1.40973 * 107.02680 * 179.74616 * 5 4 2 7 7 C 1.35937 * 106.74267 * 0.37633 * 6 5 4 8 8 C 1.47810 * 125.92765 * 179.88524 * 7 6 5 9 9 C 1.39805 * 120.00471 * 359.71844 * 8 7 6 10 10 C 1.37806 * 120.25051 * 180.02562 * 9 8 7 11 11 C 1.38779 * 120.24334 * 0.02562 * 10 9 8 12 12 O 1.35646 * 120.00365 * 179.97438 * 11 10 9 13 13 C 1.40257 * 119.99355 * 0.25238 * 11 10 9 14 14 C 1.47566 * 120.11922 * 179.74547 * 13 11 10 15 15 O 1.21588 * 120.00120 * 0.02562 * 14 13 11 16 16 N 1.34771 * 119.99615 * 179.97438 * 14 13 11 17 17 C 1.46504 * 120.00005 * 179.97438 * 16 14 13 18 18 H 1.09001 * 112.84928 * 336.20475 * 17 16 14 19 19 C 1.53786 * 113.61119 * 107.50417 * 17 16 14 20 20 C 1.53780 * 87.07928 * 89.12158 * 19 17 16 21 21 H 1.09003 * 113.61164 * 270.88437 * 20 19 17 22 22 C 1.52994 * 113.68916 * 139.99151 * 20 19 17 23 23 N 1.46502 * 109.47279 * 87.46638 * 22 20 19 24 24 C 1.34430 * 126.82899 * 124.99681 * 23 22 20 25 25 N 1.30825 * 108.08072 * 179.97438 * 24 23 22 26 26 C 1.33246 * 109.83065 * 0.02562 * 25 24 23 27 27 N 1.30714 * 108.94053 * 359.74820 * 26 25 24 28 28 C 1.53774 * 113.61858 * 205.00429 * 17 16 14 29 29 C 1.39214 * 120.00067 * 179.73525 * 8 7 6 30 30 O 1.34340 * 125.66885 * 244.98157 * 4 2 1 31 31 H 0.96697 * 114.00109 * 300.00280 * 1 2 3 32 32 H 1.08997 * 109.47692 * 239.99822 * 2 1 3 33 33 H 1.48496 * 109.99910 * 178.67983 * 3 2 1 34 34 H 1.48507 * 109.99795 * 299.99466 * 3 2 1 35 35 H 1.08001 * 126.48288 * 0.02562 * 5 4 2 36 36 H 1.07999 * 126.62609 * 180.27810 * 6 5 4 37 37 H 1.08001 * 119.87383 * 0.02562 * 9 8 7 38 38 H 1.07998 * 119.88355 * 180.02562 * 10 9 8 39 39 H 0.96700 * 114.00407 * 89.99831 * 12 11 10 40 40 H 0.97001 * 120.00246 * 0.02562 * 16 14 13 41 41 H 1.09006 * 113.61270 * 203.66587 * 19 17 16 42 42 H 1.08994 * 113.61440 * 334.57091 * 19 17 16 43 43 H 1.09008 * 109.47094 * 207.46219 * 22 20 19 44 44 H 1.09002 * 109.47629 * 327.46010 * 22 20 19 45 45 H 1.08004 * 125.95336 * 0.02562 * 24 23 22 46 46 H 1.07992 * 125.53053 * 179.97438 * 26 25 24 47 47 H 1.09002 * 113.61803 * 25.42934 * 28 17 16 48 48 H 1.08998 * 113.61733 * 156.33671 * 28 17 16 49 49 H 1.08000 * 120.12101 * 359.97438 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 1.7571 -2.0166 1.5094 6 6 2.3869 -2.2622 2.7465 7 6 2.9088 -1.0778 3.1621 8 6 3.6599 -0.8531 4.4152 9 6 3.8819 -1.9148 5.2972 10 6 4.5811 -1.7109 6.4671 11 6 5.0697 -0.4498 6.7787 12 8 5.7568 -0.2545 7.9318 13 6 4.8478 0.6239 5.9040 14 6 5.3612 1.9671 6.2352 15 8 5.9782 2.1445 7.2678 16 7 5.1471 2.9969 5.3926 17 6 5.6563 4.3306 5.7217 18 1 5.8098 4.4731 6.7914 19 6 6.8571 4.7608 4.8626 20 6 5.8373 5.3377 3.8665 21 1 5.5079 4.6207 3.1144 22 6 6.2580 6.6796 3.2640 23 7 7.0774 6.4446 2.0725 24 6 6.8601 6.9276 0.8369 25 7 7.8143 6.4901 0.0562 26 6 8.6554 5.7278 0.7541 27 7 8.2490 5.6740 1.9952 28 6 4.8705 5.4719 5.0548 29 6 4.1461 0.4160 4.7173 30 8 2.6276 -0.1461 2.2313 31 1 -0.3933 0.4417 0.7650 32 1 1.7925 -0.5138 -0.8899 33 1 3.5345 1.7704 0.0321 34 1 1.5615 2.4679 -1.2086 35 1 1.2375 -2.7399 0.8985 36 1 2.4425 -3.2081 3.2647 37 1 3.5040 -2.8985 5.0609 38 1 4.7495 -2.5354 7.1440 39 1 6.7110 -0.3871 7.8484 40 1 4.6552 2.8553 4.5687 41 1 7.4827 5.5183 5.3348 42 1 7.4311 3.9242 4.4645 43 1 5.3700 7.2483 2.9878 44 1 6.8360 7.2420 3.9973 45 1 6.0410 7.5663 0.5408 46 1 9.5327 5.2373 0.3591 47 1 3.8409 5.2094 4.8117 48 1 4.9531 6.4237 5.5795 49 1 3.9759 1.2376 4.0373 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_13259648.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:40:29 Heat of formation + Delta-G solvation = 67.935041 kcal Electronic energy + Delta-G solvation = -36537.754311 eV Core-core repulsion = 31629.971186 eV Total energy + Delta-G solvation = -4907.783125 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.152 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.72334 -42.98466 -41.76125 -40.55971 -39.09227 -38.11909 -37.79494 -35.44369 -34.35772 -33.97952 -32.75642 -32.22389 -32.14873 -30.06661 -29.03596 -26.71982 -26.41138 -25.67939 -24.45259 -23.55612 -22.98877 -22.86242 -22.40153 -21.95926 -21.24652 -20.39070 -19.62380 -19.17912 -18.43112 -18.16045 -17.72408 -17.48648 -17.11506 -16.79978 -16.68073 -16.59440 -16.33757 -16.03730 -15.92530 -15.74429 -15.56659 -15.30464 -15.18479 -14.77551 -14.57374 -14.45111 -14.37520 -14.03772 -13.97017 -13.89853 -13.61448 -13.43709 -13.24165 -13.15068 -13.11951 -12.82458 -12.78101 -12.25715 -12.20298 -11.92372 -11.71596 -11.26490 -11.08359 -10.98821 -10.95853 -10.79694 -10.67842 -10.56021 -10.49023 -10.34344 -10.07263 -8.93191 -5.07947 -0.58993 -0.24177 0.70752 0.74740 1.13439 1.40771 1.46306 1.47580 1.73813 1.83385 1.88392 1.96353 2.00394 2.59156 3.08395 3.21454 3.31009 3.37275 3.44418 3.48651 3.52976 3.61718 3.65694 3.78125 3.88023 3.96798 3.99215 4.03287 4.11689 4.17783 4.22907 4.29349 4.37558 4.44686 4.58570 4.60694 4.63969 4.68105 4.76412 4.77009 4.83952 4.86858 4.97192 5.00226 5.03932 5.10971 5.14323 5.18183 5.32505 5.41759 5.44925 5.47889 5.54768 5.95834 5.96622 6.36959 6.61124 6.68944 7.08226 7.13456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.030 4.030 3 Si 0.780 3.220 4 C -0.056 4.056 5 C -0.183 4.183 6 C -0.190 4.190 7 C 0.023 3.977 8 C -0.041 4.041 9 C -0.045 4.045 10 C -0.146 4.146 11 C 0.163 3.837 12 O -0.494 6.494 13 C -0.180 4.180 14 C 0.559 3.441 15 O -0.558 6.558 16 N -0.700 5.700 17 C 0.109 3.891 18 H 0.088 0.912 19 C -0.137 4.137 20 C -0.112 4.112 21 H 0.088 0.912 22 C 0.130 3.870 23 N -0.377 5.377 24 C 0.255 3.745 25 N -0.586 5.586 26 C 0.181 3.819 27 N -0.343 5.343 28 C -0.114 4.114 29 C -0.051 4.051 30 O -0.171 6.171 31 H 0.399 0.601 32 H 0.134 0.866 33 H -0.295 1.295 34 H -0.279 1.279 35 H 0.161 0.839 36 H 0.174 0.826 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.410 0.590 40 H 0.410 0.590 41 H 0.093 0.907 42 H 0.045 0.955 43 H 0.146 0.854 44 H 0.097 0.903 45 H 0.260 0.740 46 H 0.227 0.773 47 H 0.097 0.903 48 H 0.122 0.878 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.802 1.328 -0.433 5.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.140 4.140 3 Si 0.685 3.315 4 C -0.106 4.106 5 C -0.202 4.202 6 C -0.208 4.208 7 C -0.026 4.026 8 C -0.042 4.042 9 C -0.063 4.063 10 C -0.164 4.164 11 C 0.117 3.883 12 O -0.308 6.308 13 C -0.183 4.183 14 C 0.347 3.653 15 O -0.437 6.437 16 N -0.352 5.352 17 C 0.004 3.996 18 H 0.106 0.894 19 C -0.176 4.176 20 C -0.132 4.132 21 H 0.106 0.894 22 C 0.010 3.990 23 N -0.168 5.168 24 C -0.040 4.040 25 N -0.315 5.315 26 C -0.121 4.121 27 N -0.172 5.172 28 C -0.152 4.152 29 C -0.070 4.070 30 O -0.069 6.069 31 H 0.250 0.750 32 H 0.151 0.849 33 H -0.222 1.222 34 H -0.205 1.205 35 H 0.179 0.821 36 H 0.192 0.808 37 H 0.183 0.817 38 H 0.182 0.818 39 H 0.271 0.729 40 H 0.247 0.753 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.164 0.836 44 H 0.115 0.885 45 H 0.275 0.725 46 H 0.243 0.757 47 H 0.116 0.884 48 H 0.140 0.860 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.911 1.886 -0.109 5.262 hybrid contribution 0.643 -1.082 -0.733 1.457 sum -4.268 0.804 -0.842 4.424 Atomic orbital electron populations 1.86538 1.15951 1.82150 1.50314 1.24500 0.85425 1.11457 0.92592 0.93475 0.77674 0.75284 0.85108 1.23123 1.00895 0.94189 0.92387 1.21801 1.04005 0.95969 0.98427 1.22158 1.02138 0.99055 0.97482 1.20420 1.03567 0.87721 0.90918 1.17694 1.00387 0.94470 0.91600 1.21425 0.94224 0.99281 0.91351 1.21580 1.00335 0.96485 0.98044 1.18896 0.93532 0.91482 0.84408 1.84701 1.25012 1.92455 1.28602 1.20258 1.06632 0.94174 0.97273 1.18255 0.79146 0.84759 0.83146 1.90808 1.41862 1.84747 1.26250 1.45518 1.57292 1.08174 1.24170 1.21945 0.95930 0.81918 0.99854 0.89414 1.23392 0.96443 1.00714 0.97031 1.22788 0.97428 0.96439 0.96506 0.89397 1.22280 0.94716 0.97964 0.84039 1.50787 1.19110 1.36222 1.10662 1.26913 0.99112 0.97005 0.81018 1.70535 1.07087 1.18190 1.35641 1.26397 1.00561 0.97409 0.87755 1.78015 1.00287 1.17575 1.21287 1.23300 0.98901 0.98691 0.94323 1.21383 0.93915 0.97261 0.94398 1.83886 1.58095 1.38249 1.26694 0.74983 0.84896 1.22189 1.20532 0.82143 0.80824 0.81703 0.81814 0.72945 0.75290 0.88892 0.93573 0.83649 0.88512 0.72461 0.75699 0.88448 0.85986 0.83443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.52 12.88 -148.98 -1.92 -0.39 16 2 C -0.03 0.08 2.98 71.24 0.21 0.29 16 3 Si 0.78 -2.70 32.11 68.60 2.20 -0.50 16 4 C -0.06 0.02 6.20 24.88 0.15 0.17 16 5 C -0.18 0.03 10.78 22.13 0.24 0.27 16 6 C -0.19 0.25 10.26 22.41 0.23 0.48 16 7 C 0.02 0.00 7.03 24.27 0.17 0.17 16 8 C -0.04 0.04 5.87 -20.13 -0.12 -0.08 16 9 C -0.04 0.16 9.54 22.55 0.22 0.38 16 10 C -0.15 0.29 9.96 22.30 0.22 0.52 16 11 C 0.16 0.53 6.72 22.89 0.15 0.69 16 12 O -0.49 -2.74 11.55 -68.61 -0.79 -3.54 16 13 C -0.18 -0.60 5.88 -20.04 -0.12 -0.72 16 14 C 0.56 3.57 7.76 86.71 0.67 4.24 16 15 O -0.56 -7.83 14.74 16.99 0.25 -7.58 16 16 N -0.70 0.21 5.21 -443.17 -2.31 -2.10 16 17 C 0.11 -0.18 4.32 45.52 0.20 0.02 16 18 H 0.09 0.25 7.46 -2.39 -0.02 0.23 16 19 C -0.14 0.14 7.43 31.12 0.23 0.38 16 20 C -0.11 0.80 3.73 -10.27 -0.04 0.76 16 21 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 22 C 0.13 -1.16 6.39 86.38 0.55 -0.61 16 23 N -0.38 0.39 3.69 -352.05 -1.30 -0.91 16 24 C 0.26 -0.42 12.63 180.36 2.28 1.86 16 25 N -0.59 -3.49 11.19 -204.00 -2.28 -5.78 16 26 C 0.18 1.05 13.03 180.76 2.36 3.41 16 27 N -0.34 -2.07 12.57 -61.25 -0.77 -2.84 16 28 C -0.11 1.13 7.39 31.12 0.23 1.36 16 29 C -0.05 0.03 9.20 22.79 0.21 0.24 16 30 O -0.17 -0.06 8.80 -6.49 -0.06 -0.12 16 31 H 0.40 -4.26 8.70 -74.06 -0.64 -4.90 16 32 H 0.13 -0.39 7.96 -2.39 -0.02 -0.41 16 33 H -0.29 -1.05 7.11 99.48 0.71 -0.34 16 34 H -0.28 -0.58 7.11 99.48 0.71 0.13 16 35 H 0.16 -0.34 8.06 -2.91 -0.02 -0.36 16 36 H 0.17 -1.09 7.24 -2.91 -0.02 -1.11 16 37 H 0.17 -1.50 6.96 -2.91 -0.02 -1.52 16 38 H 0.16 -1.00 8.06 -2.91 -0.02 -1.03 16 39 H 0.41 -0.52 9.06 -74.06 -0.67 -1.19 16 40 H 0.41 -2.13 6.73 -92.71 -0.62 -2.76 16 41 H 0.09 -0.10 7.90 -2.38 -0.02 -0.12 16 42 H 0.05 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.15 -2.45 8.09 -2.38 -0.02 -2.47 16 44 H 0.10 -0.88 7.85 -2.39 -0.02 -0.90 16 45 H 0.26 -3.16 8.06 -2.91 -0.02 -3.18 16 46 H 0.23 0.16 8.06 -2.91 -0.02 0.14 16 47 H 0.10 -1.19 8.14 -2.39 -0.02 -1.21 16 48 H 0.12 -1.60 8.10 -2.39 -0.02 -1.62 16 49 H 0.15 -0.66 6.24 -2.91 -0.02 -0.68 16 Total: 0.00 -33.75 423.01 0.22 -33.52 By element: Atomic # 1 Polarization: -22.71 SS G_CDS: -0.85 Total: -23.56 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 8.05 Total: 13.80 kcal Atomic # 7 Polarization: -4.97 SS G_CDS: -6.66 Total: -11.63 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -2.52 Total: -11.63 kcal Atomic # 14 Polarization: -2.70 SS G_CDS: 2.20 Total: -0.50 kcal Total: -33.75 0.22 -33.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13259648.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.458 kcal (2) G-P(sol) polarization free energy of solvation -33.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds