Wall clock time and date at job start Sun Mar 7 2021 04:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86306 * 109.46765 * 2 1 4 4 C 1.50699 * 109.47722 * 240.00131 * 2 1 3 5 5 C 1.34184 * 126.54397 * 104.95329 * 4 2 1 6 6 N 1.36859 * 109.96992 * 180.02562 * 5 4 2 7 7 C 1.37399 * 109.97952 * 359.97438 * 6 5 4 8 8 C 1.39336 * 133.25040 * 179.97438 * 7 6 5 9 9 C 1.36347 * 120.23892 * 180.02562 * 8 7 6 10 10 C 1.40175 * 120.66587 * 359.97438 * 9 8 7 11 11 C 1.47655 * 119.97307 * 179.97438 * 10 9 8 12 12 O 1.21572 * 120.00035 * 179.97438 * 11 10 9 13 13 N 1.34782 * 119.99611 * 0.02562 * 11 10 9 14 14 C 1.46505 * 119.99564 * 179.97438 * 13 11 10 15 15 H 1.09001 * 112.84875 * 336.19731 * 14 13 11 16 16 C 1.53776 * 113.68717 * 107.46492 * 14 13 11 17 17 C 1.53775 * 87.08393 * 89.12583 * 16 14 13 18 18 H 1.08996 * 113.69476 * 270.87629 * 17 16 14 19 19 C 1.53000 * 113.61825 * 139.97637 * 17 16 14 20 20 N 1.46499 * 109.46840 * 87.50296 * 19 17 16 21 21 C 1.34434 * 126.82191 * 124.99999 * 20 19 17 22 22 N 1.30831 * 108.08020 * 179.97438 * 21 20 19 23 23 C 1.33245 * 109.82847 * 0.02562 * 22 21 20 24 24 N 1.30718 * 108.94531 * 359.75451 * 23 22 21 25 25 C 1.53774 * 113.61253 * 204.99703 * 14 13 11 26 26 C 1.39184 * 120.05217 * 0.25468 * 10 9 8 27 27 C 1.39231 * 119.39606 * 359.51778 * 26 10 9 28 28 H 0.96691 * 114.00462 * 299.99992 * 1 2 3 29 29 H 1.09001 * 109.47352 * 119.99462 * 2 1 3 30 30 H 1.48496 * 109.99972 * 299.99953 * 3 2 1 31 31 H 1.48503 * 109.99774 * 61.31822 * 3 2 1 32 32 H 1.08010 * 125.01389 * 0.02562 * 5 4 2 33 33 H 0.97008 * 125.00986 * 180.02562 * 6 5 4 34 34 H 1.07996 * 119.87614 * 0.02562 * 8 7 6 35 35 H 1.07991 * 119.66674 * 179.97438 * 9 8 7 36 36 H 0.97000 * 120.00182 * 359.97438 * 13 11 10 37 37 H 1.09005 * 113.62055 * 334.57437 * 16 14 13 38 38 H 1.08999 * 113.61331 * 203.67817 * 16 14 13 39 39 H 1.09002 * 109.47398 * 207.50622 * 19 17 16 40 40 H 1.09001 * 109.47194 * 327.50803 * 19 17 16 41 41 H 1.08000 * 125.96215 * 0.02562 * 21 20 19 42 42 H 1.07998 * 125.53102 * 179.97438 * 23 22 21 43 43 H 1.09006 * 113.61277 * 156.25191 * 25 14 13 44 44 H 1.09001 * 113.69334 * 25.36603 * 25 14 13 45 45 H 1.08001 * 120.29971 * 179.72110 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7566 0.0000 4 6 1.9315 -0.7103 -1.2304 5 6 2.4602 -0.1386 -2.3232 6 7 2.8020 -1.1003 -3.2349 7 6 2.4958 -2.3454 -2.7412 8 6 2.6345 -3.6350 -3.2502 9 6 2.2316 -4.7104 -2.5153 10 6 1.6741 -4.5370 -1.2409 11 6 1.2423 -5.7124 -0.4584 12 8 0.7592 -5.5626 0.6471 13 7 1.3849 -6.9514 -0.9694 14 6 0.9570 -8.1177 -0.1928 15 1 0.9356 -7.9270 0.8802 16 6 -0.3245 -8.7791 -0.7267 17 6 0.5853 -9.6402 -1.6185 18 1 0.8018 -9.1904 -2.5874 19 6 0.1343 -11.0981 -1.7278 20 7 -0.8283 -11.2305 -2.8243 21 6 -0.7465 -12.0698 -3.8712 22 7 -1.7995 -11.8827 -4.6248 23 6 -2.5726 -10.9360 -4.0942 24 7 -2.0222 -10.5093 -2.9880 25 6 1.6909 -9.4142 -0.5737 26 6 1.5218 -3.2574 -0.7149 27 6 1.9369 -2.1578 -1.4614 28 1 -0.3933 0.4416 0.7649 29 1 1.7924 -0.5137 0.8900 30 1 1.5614 2.4679 -1.2085 31 1 1.5877 2.4586 1.2243 32 1 2.5958 0.9238 -2.4626 33 1 3.2023 -0.9283 -4.1017 34 1 3.0628 -3.7832 -4.2305 35 1 2.3431 -5.7058 -2.9190 36 1 1.7707 -7.0709 -1.8513 37 1 -0.9667 -8.0987 -1.2860 38 1 -0.8665 -9.3515 0.0260 39 1 0.9988 -11.7322 -1.9246 40 1 -0.3355 -11.4042 -0.7931 41 1 0.0491 -12.7760 -4.0573 42 1 -3.5046 -10.5813 -4.5088 43 1 1.6999 -10.1604 0.2209 44 1 2.6761 -9.2481 -1.0094 45 1 1.0886 -3.1189 0.2646 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_13287722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:40:34 Heat of formation + Delta-G solvation = 120.597696 kcal Electronic energy + Delta-G solvation = -29827.104541 eV Core-core repulsion = 25621.769654 eV Total energy + Delta-G solvation = -4205.334887 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 354.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.95953 -42.49015 -41.35007 -39.66436 -37.98780 -37.51450 -35.44589 -33.95185 -33.40320 -32.13874 -30.95458 -30.56721 -28.94462 -26.71412 -26.47473 -25.41609 -24.11312 -23.51059 -22.83590 -22.38286 -21.82466 -20.63095 -20.34199 -19.11973 -18.60031 -18.51481 -18.14059 -17.39461 -17.15938 -16.76314 -16.31738 -16.10921 -15.89668 -15.81629 -15.43805 -15.25990 -15.20297 -15.04377 -14.85971 -14.79999 -14.63727 -14.18085 -14.00026 -13.83009 -13.49928 -13.47109 -13.13159 -12.84051 -12.78840 -12.62034 -12.18802 -12.17447 -11.85003 -11.72062 -11.25709 -11.14710 -10.95215 -10.82802 -10.77305 -10.54037 -10.39376 -10.16598 -9.36627 -8.84930 -4.89749 -0.19558 0.16463 0.73442 1.32105 1.45702 1.48521 1.62871 1.78258 1.95896 2.02506 2.03109 2.08188 2.83381 3.32286 3.46134 3.50729 3.55574 3.59502 3.65986 3.68150 3.76271 3.81181 3.98357 4.00437 4.09070 4.14089 4.23640 4.24515 4.38061 4.44333 4.51861 4.56406 4.60479 4.68247 4.75422 4.77017 4.85842 4.96605 4.99665 5.04738 5.14990 5.23396 5.30160 5.34997 5.44432 5.47585 5.53804 5.57528 5.94365 5.98387 6.44666 6.55209 6.61837 7.13447 7.16050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.066 4.066 3 Si 0.787 3.213 4 C -0.182 4.182 5 C 0.080 3.920 6 N -0.571 5.571 7 C 0.112 3.888 8 C -0.124 4.124 9 C -0.067 4.067 10 C -0.180 4.180 11 C 0.563 3.437 12 O -0.587 6.587 13 N -0.695 5.695 14 C 0.106 3.894 15 H 0.083 0.917 16 C -0.140 4.140 17 C -0.108 4.108 18 H 0.091 0.909 19 C 0.131 3.869 20 N -0.377 5.377 21 C 0.256 3.744 22 N -0.585 5.585 23 C 0.182 3.818 24 N -0.345 5.345 25 C -0.112 4.112 26 C -0.019 4.019 27 C -0.129 4.129 28 H 0.390 0.610 29 H 0.070 0.930 30 H -0.278 1.278 31 H -0.293 1.293 32 H 0.206 0.794 33 H 0.439 0.561 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.413 0.587 37 H 0.044 0.956 38 H 0.091 0.909 39 H 0.146 0.854 40 H 0.095 0.905 41 H 0.260 0.740 42 H 0.227 0.773 43 H 0.120 0.880 44 H 0.098 0.902 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.369 -1.020 -3.924 11.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.374 6.374 2 C -0.174 4.174 3 Si 0.689 3.311 4 C -0.189 4.189 5 C -0.048 4.048 6 N -0.174 5.174 7 C 0.002 3.998 8 C -0.144 4.144 9 C -0.086 4.086 10 C -0.184 4.184 11 C 0.352 3.648 12 O -0.469 6.469 13 N -0.346 5.346 14 C 0.001 3.999 15 H 0.102 0.898 16 C -0.178 4.178 17 C -0.128 4.128 18 H 0.110 0.890 19 C 0.010 3.990 20 N -0.168 5.168 21 C -0.039 4.039 22 N -0.313 5.313 23 C -0.121 4.121 24 N -0.173 5.173 25 C -0.150 4.150 26 C -0.039 4.039 27 C -0.134 4.134 28 H 0.239 0.761 29 H 0.088 0.912 30 H -0.204 1.204 31 H -0.220 1.220 32 H 0.223 0.777 33 H 0.281 0.719 34 H 0.180 0.820 35 H 0.176 0.824 36 H 0.252 0.748 37 H 0.063 0.937 38 H 0.109 0.891 39 H 0.164 0.836 40 H 0.113 0.887 41 H 0.276 0.724 42 H 0.243 0.757 43 H 0.139 0.861 44 H 0.116 0.884 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.660 0.011 -3.594 10.307 hybrid contribution -1.437 -0.049 0.226 1.455 sum 8.223 -0.038 -3.368 8.886 Atomic orbital electron populations 1.86586 1.19480 1.80823 1.50510 1.24576 0.83292 1.12523 0.96967 0.94118 0.89576 0.70129 0.77246 1.19822 1.09880 0.91038 0.98114 1.22091 0.99054 0.95585 0.88028 1.41725 1.53948 1.03145 1.18601 1.18638 0.99789 0.87876 0.93494 1.20060 1.04385 0.87878 1.02121 1.20853 0.96016 1.00127 0.91654 1.19569 1.09108 0.92194 0.97546 1.18472 0.77084 0.84036 0.85163 1.90754 1.46900 1.86718 1.22484 1.45415 1.63456 1.04440 1.21305 1.21953 0.96376 0.85398 0.96199 0.89830 1.23404 0.96333 0.98790 0.99316 1.22764 0.97005 0.94118 0.98876 0.89043 1.22267 0.90573 0.98358 0.87781 1.50776 1.16879 1.28259 1.20904 1.26920 0.98306 0.94646 0.84077 1.70542 1.06547 1.21235 1.32992 1.26408 1.01221 0.93489 0.90945 1.78039 0.97597 1.20560 1.21153 1.23277 0.97947 0.95069 0.98728 1.20580 0.94258 0.90620 0.98453 1.19207 1.05170 0.93467 0.95561 0.76063 0.91200 1.20406 1.21971 0.77724 0.71906 0.81956 0.82371 0.74843 0.93675 0.89080 0.83600 0.88711 0.72420 0.75671 0.86137 0.88398 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.25 12.86 -148.98 -1.92 -6.17 16 2 C -0.07 -0.23 3.05 71.24 0.22 -0.02 16 3 Si 0.79 -1.84 30.80 68.60 2.11 0.27 16 4 C -0.18 -0.91 5.61 -18.61 -0.10 -1.01 16 5 C 0.08 -0.12 10.43 82.98 0.87 0.74 16 6 N -0.57 1.97 6.05 -187.48 -1.13 0.84 16 7 C 0.11 0.24 7.27 39.19 0.28 0.53 16 8 C -0.12 0.22 10.00 22.09 0.22 0.44 16 9 C -0.07 0.02 9.46 22.30 0.21 0.23 16 10 C -0.18 -1.35 5.87 -20.09 -0.12 -1.47 16 11 C 0.56 5.59 7.76 86.73 0.67 6.26 16 12 O -0.59 -11.24 15.93 -3.94 -0.06 -11.30 16 13 N -0.69 -0.95 5.22 -443.09 -2.31 -3.26 16 14 C 0.11 0.02 4.32 45.51 0.20 0.21 16 15 H 0.08 0.44 7.46 -2.39 -0.02 0.42 16 16 C -0.14 -0.10 7.43 31.12 0.23 0.14 16 17 C -0.11 0.70 3.74 -10.27 -0.04 0.66 16 18 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 19 C 0.13 -1.09 6.39 86.38 0.55 -0.54 16 20 N -0.38 0.28 3.69 -352.06 -1.30 -1.02 16 21 C 0.26 -0.44 12.63 180.36 2.28 1.84 16 22 N -0.59 -3.41 11.19 -203.99 -2.28 -5.69 16 23 C 0.18 1.08 13.03 180.76 2.36 3.44 16 24 N -0.35 -2.25 12.57 -61.24 -0.77 -3.02 16 25 C -0.11 1.00 7.39 31.12 0.23 1.23 16 26 C -0.02 -0.22 9.64 22.74 0.22 0.00 16 27 C -0.13 -1.06 6.34 -20.21 -0.13 -1.19 16 28 H 0.39 -0.20 8.74 -74.06 -0.65 -0.85 16 29 H 0.07 0.20 7.96 -2.39 -0.02 0.19 16 30 H -0.28 -0.40 7.04 99.48 0.70 0.30 16 31 H -0.29 -0.87 7.11 99.48 0.71 -0.16 16 32 H 0.21 -1.68 6.30 -2.91 -0.02 -1.70 16 33 H 0.44 -4.81 8.96 -92.70 -0.83 -5.64 16 34 H 0.16 -1.44 8.06 -2.91 -0.02 -1.46 16 35 H 0.16 -1.24 6.36 -2.92 -0.02 -1.26 16 36 H 0.41 -2.11 6.71 -92.71 -0.62 -2.73 16 37 H 0.04 0.32 8.14 -2.38 -0.02 0.30 16 38 H 0.09 0.07 7.90 -2.39 -0.02 0.05 16 39 H 0.15 -2.40 8.09 -2.39 -0.02 -2.42 16 40 H 0.09 -0.78 7.84 -2.39 -0.02 -0.80 16 41 H 0.26 -3.20 8.06 -2.91 -0.02 -3.22 16 42 H 0.23 0.20 8.06 -2.91 -0.02 0.18 16 43 H 0.12 -1.45 8.10 -2.38 -0.02 -1.47 16 44 H 0.10 -1.13 8.14 -2.39 -0.02 -1.15 16 45 H 0.11 1.67 7.64 -2.91 -0.02 1.65 16 Total: 0.00 -37.61 383.49 -0.51 -38.12 By element: Atomic # 1 Polarization: -19.26 SS G_CDS: -0.99 Total: -20.26 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 8.15 Total: 11.49 kcal Atomic # 7 Polarization: -4.36 SS G_CDS: -7.80 Total: -12.16 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -1.98 Total: -17.47 kcal Atomic # 14 Polarization: -1.84 SS G_CDS: 2.11 Total: 0.27 kcal Total: -37.61 -0.51 -38.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13287722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.714 kcal (2) G-P(sol) polarization free energy of solvation -37.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds