Wall clock time and date at job start Sun Mar 7 2021 04:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86294 * 109.47408 * 2 1 4 4 C 1.50700 * 109.46939 * 239.99687 * 2 1 3 5 5 C 1.38587 * 120.32649 * 300.02326 * 4 2 1 6 6 C 1.38633 * 118.48767 * 179.72375 * 5 4 2 7 7 C 1.39274 * 119.06139 * 0.48227 * 6 5 4 8 8 C 1.48165 * 119.72317 * 179.79277 * 7 6 5 9 9 O 1.21512 * 120.00003 * 359.71989 * 8 7 6 10 10 N 1.34776 * 119.99741 * 179.72007 * 8 7 6 11 11 C 1.46505 * 119.99597 * 180.02562 * 10 8 7 12 12 H 1.09000 * 112.85296 * 23.80222 * 11 10 8 13 13 C 1.53781 * 113.61334 * 154.99978 * 11 10 8 14 14 C 1.53786 * 87.17350 * 89.07333 * 13 11 10 15 15 H 1.09000 * 113.60973 * 270.92699 * 14 13 11 16 16 C 1.52990 * 113.61464 * 140.02626 * 14 13 11 17 17 N 1.46497 * 109.47171 * 174.99989 * 16 14 13 18 18 C 1.34434 * 126.82456 * 124.70667 * 17 16 14 19 19 N 1.30835 * 108.07661 * 179.89712 * 18 17 16 20 20 C 1.33247 * 109.82989 * 0.37460 * 19 18 17 21 21 N 1.30717 * 108.94300 * 359.76968 * 20 19 18 22 22 C 1.53781 * 113.61146 * 252.49455 * 11 10 8 23 23 N 1.32747 * 120.55252 * 359.50428 * 7 6 5 24 24 C 1.31494 * 121.64554 * 0.26676 * 23 7 6 25 25 H 0.96701 * 113.99937 * 60.00114 * 1 2 3 26 26 H 1.09007 * 109.46868 * 120.00228 * 2 1 3 27 27 H 1.48502 * 110.00107 * 59.99689 * 3 2 1 28 28 H 1.48493 * 110.00254 * 181.31891 * 3 2 1 29 29 H 1.07993 * 120.75653 * 359.97438 * 5 4 2 30 30 H 1.07999 * 120.47131 * 180.26604 * 6 5 4 31 31 H 0.96995 * 120.00232 * 359.97438 * 10 8 7 32 32 H 1.09002 * 113.61445 * 203.66333 * 13 11 10 33 33 H 1.09002 * 113.61408 * 334.48063 * 13 11 10 34 34 H 1.09007 * 109.47036 * 294.99322 * 16 14 13 35 35 H 1.08994 * 109.47734 * 54.99728 * 16 14 13 36 36 H 1.07995 * 125.96117 * 0.03351 * 18 17 16 37 37 H 1.07997 * 125.52731 * 179.79674 * 20 19 18 38 38 H 1.09005 * 113.61471 * 25.43638 * 22 11 10 39 39 H 1.08996 * 113.61178 * 156.24980 * 22 11 10 40 40 H 1.07996 * 119.55403 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6002 -2.0371 -1.4566 6 6 2.0782 -2.6516 -2.6037 7 6 2.8786 -1.9214 -3.4790 8 6 3.4012 -2.5650 -4.7070 9 8 3.1353 -3.7267 -4.9444 10 7 4.1715 -1.8619 -5.5606 11 6 4.6878 -2.4982 -6.7751 12 1 4.0862 -3.3487 -7.0959 13 6 5.0014 -1.5040 -7.9057 14 6 6.4120 -1.3834 -7.3052 15 1 6.4983 -0.6058 -6.5462 16 6 7.5217 -1.3156 -8.3561 17 7 8.8077 -1.0828 -7.6941 18 6 9.9174 -1.8338 -7.8026 19 7 10.8483 -1.2922 -7.0598 20 6 10.3702 -0.2037 -6.4581 21 7 9.1242 -0.0341 -6.8152 22 6 6.1961 -2.7930 -6.7225 23 7 3.1724 -0.6520 -3.2251 24 6 2.7286 -0.0434 -2.1472 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5139 0.8900 27 1 1.5615 2.4679 1.2085 28 1 3.5346 1.7702 -0.0321 29 1 0.9806 -2.5786 -0.7573 30 1 1.8364 -3.6829 -2.8139 31 1 4.3834 -0.9345 -5.3713 32 1 4.9865 -1.9532 -8.8987 33 1 4.4225 -0.5821 -7.8495 34 1 7.5606 -2.2569 -8.9046 35 1 7.3168 -0.4996 -9.0490 36 1 10.0228 -2.7269 -8.4005 37 1 10.9226 0.4351 -5.7849 38 1 6.5829 -2.9111 -5.7103 39 1 6.5077 -3.5956 -7.3909 40 1 2.9888 0.9903 -1.9739 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688106_13287726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:40:39 Heat of formation + Delta-G solvation = 99.011259 kcal Electronic energy + Delta-G solvation = -25126.842795 eV Core-core repulsion = 21332.561750 eV Total energy + Delta-G solvation = -3794.281046 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.132 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.97502 -41.98104 -41.00367 -39.41829 -37.98953 -35.50979 -34.29233 -33.42818 -32.98583 -32.10807 -29.34487 -27.83575 -26.93665 -25.14922 -24.86991 -23.80890 -22.94217 -22.45356 -22.06734 -20.31544 -19.40614 -18.70706 -18.33418 -17.79127 -17.15287 -16.76286 -16.75701 -16.51395 -16.27270 -16.02223 -15.95925 -15.75920 -15.23167 -15.08949 -14.96876 -14.54499 -14.43376 -14.31641 -13.96805 -13.67892 -13.61962 -13.34150 -12.88515 -12.68711 -12.30618 -12.18995 -11.86660 -11.59109 -11.38861 -11.13371 -10.90002 -10.74074 -10.71026 -10.69675 -10.55295 -10.35459 -10.10790 -5.20894 -0.62834 0.00547 0.70168 1.06568 1.32824 1.45633 1.56926 1.82339 1.88642 2.07599 2.63905 2.87306 3.17969 3.20729 3.27797 3.31249 3.38047 3.42327 3.56909 3.61465 3.67665 3.80164 3.87983 3.96665 4.04146 4.07504 4.25457 4.26025 4.38845 4.47122 4.47970 4.49558 4.63184 4.79076 4.83017 4.85473 4.90756 5.01716 5.29785 5.30457 5.43595 5.50633 5.84083 6.25337 6.34229 6.56502 7.06467 7.16448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.067 4.067 3 Si 0.688 3.312 4 C -0.149 4.149 5 C -0.053 4.053 6 C -0.107 4.107 7 C 0.079 3.921 8 C 0.577 3.423 9 O -0.527 6.527 10 N -0.694 5.694 11 C 0.120 3.880 12 H 0.109 0.891 13 C -0.135 4.135 14 C -0.125 4.125 15 H 0.106 0.894 16 C 0.138 3.862 17 N -0.377 5.377 18 C 0.253 3.747 19 N -0.548 5.548 20 C 0.198 3.802 21 N -0.318 5.318 22 C -0.147 4.147 23 N -0.453 5.453 24 C 0.103 3.897 25 H 0.381 0.619 26 H 0.121 0.879 27 H -0.249 1.249 28 H -0.252 1.252 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.413 0.587 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.218 0.782 37 H 0.216 0.784 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.615 1.986 -2.972 4.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.178 4.178 3 Si 0.589 3.411 4 C -0.152 4.152 5 C -0.079 4.079 6 C -0.128 4.128 7 C -0.059 4.059 8 C 0.362 3.638 9 O -0.402 6.402 10 N -0.345 5.345 11 C 0.015 3.985 12 H 0.127 0.873 13 C -0.174 4.174 14 C -0.144 4.144 15 H 0.125 0.875 16 C 0.016 3.984 17 N -0.168 5.168 18 C -0.044 4.044 19 N -0.274 5.274 20 C -0.105 4.105 21 N -0.146 5.146 22 C -0.186 4.186 23 N -0.163 5.163 24 C -0.056 4.056 25 H 0.229 0.771 26 H 0.138 0.862 27 H -0.173 1.173 28 H -0.177 1.177 29 H 0.166 0.834 30 H 0.171 0.829 31 H 0.250 0.750 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.234 0.766 37 H 0.233 0.767 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.889 2.313 -2.563 3.936 hybrid contribution -0.295 -0.776 0.753 1.121 sum -2.185 1.537 -1.811 3.227 Atomic orbital electron populations 1.86539 1.16567 1.81653 1.49354 1.25052 0.85612 1.10442 0.96736 0.94771 0.81210 0.77226 0.87929 1.21676 0.99040 0.96045 0.98396 1.21562 0.96440 0.93622 0.96259 1.22229 0.95208 1.02078 0.93238 1.21119 0.98033 0.90767 0.95983 1.17844 0.78172 0.85591 0.82234 1.90819 1.58606 1.16010 1.74735 1.45484 1.50767 1.16183 1.22081 1.21824 0.94952 0.97067 0.84695 0.87256 1.23340 0.95034 1.00397 0.98640 1.23036 0.93608 0.99324 0.98422 0.87545 1.21917 0.78693 1.03438 0.94313 1.50568 1.11863 1.19592 1.34752 1.26104 0.82528 0.97893 0.97872 1.70565 1.31641 1.11213 1.14030 1.26045 0.90097 0.95086 0.99270 1.78023 1.17135 1.09165 1.10230 1.23589 0.96148 0.96386 1.02465 1.67509 1.20225 1.09096 1.19520 1.22634 0.94056 0.99706 0.89222 0.77118 0.86161 1.17294 1.17706 0.83382 0.82946 0.75022 0.87933 0.89938 0.87745 0.88909 0.76609 0.76736 0.90913 0.88655 0.81894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.82 12.78 -35.23 -0.45 0.37 16 2 C -0.07 0.14 2.83 36.01 0.10 0.24 16 3 Si 0.69 -1.83 29.82 -169.99 -5.07 -6.90 16 4 C -0.15 0.18 5.40 -104.36 -0.56 -0.38 16 5 C -0.05 0.04 9.76 -39.31 -0.38 -0.35 16 6 C -0.11 -0.07 9.63 -39.05 -0.38 -0.45 16 7 C 0.08 0.13 6.75 -83.01 -0.56 -0.43 16 8 C 0.58 1.45 7.81 -12.18 -0.10 1.36 16 9 O -0.53 -2.79 15.92 5.35 0.09 -2.71 16 10 N -0.69 -0.06 5.25 -53.86 -0.28 -0.35 16 11 C 0.12 -0.15 4.32 -67.11 -0.29 -0.44 16 12 H 0.11 -0.02 7.46 -51.93 -0.39 -0.40 16 13 C -0.14 0.50 7.38 -25.92 -0.19 0.31 16 14 C -0.12 0.33 3.76 -89.67 -0.34 0.00 16 15 H 0.11 -0.07 8.00 -51.93 -0.42 -0.48 16 16 C 0.14 -0.45 6.39 -4.05 -0.03 -0.48 16 17 N -0.38 -0.04 3.69 -62.64 -0.23 -0.28 16 18 C 0.25 0.02 12.63 -90.65 -1.14 -1.13 16 19 N -0.55 -1.66 11.19 -15.83 -0.18 -1.84 16 20 C 0.20 0.47 13.03 -91.80 -1.20 -0.73 16 21 N -0.32 -0.85 12.45 29.29 0.36 -0.49 16 22 C -0.15 0.27 7.44 -25.78 -0.19 0.07 16 23 N -0.45 -0.35 9.54 -9.80 -0.09 -0.45 16 24 C 0.10 -0.09 9.84 -17.56 -0.17 -0.26 16 25 H 0.38 -2.02 8.70 45.56 0.40 -1.63 16 26 H 0.12 -0.21 7.96 -51.92 -0.41 -0.63 16 27 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 28 H -0.25 0.09 7.11 56.52 0.40 0.49 16 29 H 0.15 -0.29 8.06 -52.49 -0.42 -0.72 16 30 H 0.15 0.05 7.64 -52.49 -0.40 -0.35 16 31 H 0.41 -0.35 8.03 -40.82 -0.33 -0.67 16 32 H 0.10 -0.54 8.10 -51.93 -0.42 -0.97 16 33 H 0.08 -0.29 8.14 -51.93 -0.42 -0.72 16 34 H 0.10 -0.62 7.80 -51.93 -0.40 -1.03 16 35 H 0.09 -0.34 8.14 -51.93 -0.42 -0.76 16 36 H 0.22 -0.93 8.06 -52.49 -0.42 -1.35 16 37 H 0.22 -0.14 8.06 -52.49 -0.42 -0.57 16 38 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 39 H 0.10 -0.31 7.91 -51.93 -0.41 -0.72 16 40 H 0.16 -0.51 4.89 -52.49 -0.26 -0.77 16 LS Contribution 346.95 15.07 5.23 5.23 Total: 0.00 -10.68 346.95 -10.83 -21.51 By element: Atomic # 1 Polarization: -6.66 SS G_CDS: -4.78 Total: -11.43 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -5.43 Total: -2.67 kcal Atomic # 7 Polarization: -2.98 SS G_CDS: -0.42 Total: -3.40 kcal Atomic # 8 Polarization: -1.97 SS G_CDS: -0.36 Total: -2.34 kcal Atomic # 14 Polarization: -1.83 SS G_CDS: -5.07 Total: -6.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -10.68 -10.83 -21.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13287726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.522 kcal (2) G-P(sol) polarization free energy of solvation -10.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds