Wall clock time and date at job start Sun Mar 7 2021 04:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86294 * 109.47408 * 2 1 4 4 C 1.50700 * 109.46939 * 239.99687 * 2 1 3 5 5 C 1.38587 * 120.32649 * 300.02326 * 4 2 1 6 6 C 1.38633 * 118.48767 * 179.72375 * 5 4 2 7 7 C 1.39274 * 119.06139 * 0.48227 * 6 5 4 8 8 C 1.48165 * 119.72317 * 179.79277 * 7 6 5 9 9 O 1.21512 * 120.00003 * 359.71989 * 8 7 6 10 10 N 1.34776 * 119.99741 * 179.72007 * 8 7 6 11 11 C 1.46505 * 119.99597 * 180.02562 * 10 8 7 12 12 H 1.09000 * 112.85296 * 23.80222 * 11 10 8 13 13 C 1.53781 * 113.61334 * 154.99978 * 11 10 8 14 14 C 1.53786 * 87.17350 * 89.07333 * 13 11 10 15 15 H 1.09000 * 113.60973 * 270.92699 * 14 13 11 16 16 C 1.52990 * 113.61464 * 140.02626 * 14 13 11 17 17 N 1.46497 * 109.47171 * 174.99989 * 16 14 13 18 18 C 1.34434 * 126.82456 * 124.70667 * 17 16 14 19 19 N 1.30835 * 108.07661 * 179.89712 * 18 17 16 20 20 C 1.33247 * 109.82989 * 0.37460 * 19 18 17 21 21 N 1.30717 * 108.94300 * 359.76968 * 20 19 18 22 22 C 1.53781 * 113.61146 * 252.49455 * 11 10 8 23 23 N 1.32747 * 120.55252 * 359.50428 * 7 6 5 24 24 C 1.31494 * 121.64554 * 0.26676 * 23 7 6 25 25 H 0.96701 * 113.99937 * 60.00114 * 1 2 3 26 26 H 1.09007 * 109.46868 * 120.00228 * 2 1 3 27 27 H 1.48502 * 110.00107 * 59.99689 * 3 2 1 28 28 H 1.48493 * 110.00254 * 181.31891 * 3 2 1 29 29 H 1.07993 * 120.75653 * 359.97438 * 5 4 2 30 30 H 1.07999 * 120.47131 * 180.26604 * 6 5 4 31 31 H 0.96995 * 120.00232 * 359.97438 * 10 8 7 32 32 H 1.09002 * 113.61445 * 203.66333 * 13 11 10 33 33 H 1.09002 * 113.61408 * 334.48063 * 13 11 10 34 34 H 1.09007 * 109.47036 * 294.99322 * 16 14 13 35 35 H 1.08994 * 109.47734 * 54.99728 * 16 14 13 36 36 H 1.07995 * 125.96117 * 0.03351 * 18 17 16 37 37 H 1.07997 * 125.52731 * 179.79674 * 20 19 18 38 38 H 1.09005 * 113.61471 * 25.43638 * 22 11 10 39 39 H 1.08996 * 113.61178 * 156.24980 * 22 11 10 40 40 H 1.07996 * 119.55403 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6002 -2.0371 -1.4566 6 6 2.0782 -2.6516 -2.6037 7 6 2.8786 -1.9214 -3.4790 8 6 3.4012 -2.5650 -4.7070 9 8 3.1353 -3.7267 -4.9444 10 7 4.1715 -1.8619 -5.5606 11 6 4.6878 -2.4982 -6.7751 12 1 4.0862 -3.3487 -7.0959 13 6 5.0014 -1.5040 -7.9057 14 6 6.4120 -1.3834 -7.3052 15 1 6.4983 -0.6058 -6.5462 16 6 7.5217 -1.3156 -8.3561 17 7 8.8077 -1.0828 -7.6941 18 6 9.9174 -1.8338 -7.8026 19 7 10.8483 -1.2922 -7.0598 20 6 10.3702 -0.2037 -6.4581 21 7 9.1242 -0.0341 -6.8152 22 6 6.1961 -2.7930 -6.7225 23 7 3.1724 -0.6520 -3.2251 24 6 2.7286 -0.0434 -2.1472 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5139 0.8900 27 1 1.5615 2.4679 1.2085 28 1 3.5346 1.7702 -0.0321 29 1 0.9806 -2.5786 -0.7573 30 1 1.8364 -3.6829 -2.8139 31 1 4.3834 -0.9345 -5.3713 32 1 4.9865 -1.9532 -8.8987 33 1 4.4225 -0.5821 -7.8495 34 1 7.5606 -2.2569 -8.9046 35 1 7.3168 -0.4996 -9.0490 36 1 10.0228 -2.7269 -8.4005 37 1 10.9226 0.4351 -5.7849 38 1 6.5829 -2.9111 -5.7103 39 1 6.5077 -3.5956 -7.3909 40 1 2.9888 0.9903 -1.9739 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_13287726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:40:38 Heat of formation + Delta-G solvation = 97.892369 kcal Electronic energy + Delta-G solvation = -25126.891314 eV Core-core repulsion = 21332.561750 eV Total energy + Delta-G solvation = -3794.329564 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 316.132 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.97844 -42.00368 -40.94797 -39.45259 -37.88704 -35.49944 -34.28394 -33.43275 -32.96696 -32.15398 -29.25113 -27.78056 -26.74340 -25.11419 -24.81304 -23.77644 -22.92210 -22.41690 -22.09621 -20.22993 -19.41964 -18.62346 -18.25576 -17.75408 -17.10475 -16.73276 -16.67166 -16.49907 -16.29436 -15.98438 -15.93635 -15.67994 -15.19814 -15.02629 -14.95714 -14.53740 -14.38710 -14.29046 -13.82558 -13.57121 -13.47548 -13.29084 -12.78114 -12.57517 -12.21014 -12.15281 -11.78431 -11.54324 -11.41539 -11.11425 -10.96508 -10.78364 -10.73936 -10.63091 -10.50905 -10.35437 -10.10118 -5.03071 -0.65241 0.03164 0.70955 1.22110 1.45276 1.47628 1.61159 1.87564 1.95104 2.01502 2.60888 2.88333 3.37123 3.39312 3.46744 3.47586 3.47969 3.54329 3.61289 3.74435 3.78239 3.91076 3.94482 4.08563 4.16441 4.20021 4.38179 4.48795 4.52692 4.54100 4.63833 4.74137 4.77754 4.85743 4.94423 4.95273 5.01843 5.13813 5.31750 5.33388 5.46428 5.49909 5.95922 6.20534 6.54839 6.69393 6.96770 7.13863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.068 4.068 3 Si 0.773 3.227 4 C -0.141 4.141 5 C -0.053 4.053 6 C -0.114 4.114 7 C 0.061 3.939 8 C 0.571 3.429 9 O -0.564 6.564 10 N -0.685 5.685 11 C 0.106 3.894 12 H 0.098 0.902 13 C -0.116 4.116 14 C -0.117 4.117 15 H 0.082 0.918 16 C 0.132 3.868 17 N -0.376 5.376 18 C 0.255 3.745 19 N -0.586 5.586 20 C 0.185 3.815 21 N -0.348 5.348 22 C -0.143 4.143 23 N -0.461 5.461 24 C 0.100 3.900 25 H 0.398 0.602 26 H 0.120 0.880 27 H -0.294 1.294 28 H -0.281 1.281 29 H 0.162 0.838 30 H 0.150 0.850 31 H 0.417 0.583 32 H 0.129 0.871 33 H 0.084 0.916 34 H 0.141 0.859 35 H 0.102 0.898 36 H 0.257 0.743 37 H 0.230 0.770 38 H 0.043 0.957 39 H 0.116 0.884 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.967 2.182 -4.111 5.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.179 4.179 3 Si 0.678 3.322 4 C -0.144 4.144 5 C -0.078 4.078 6 C -0.135 4.135 7 C -0.076 4.076 8 C 0.357 3.643 9 O -0.442 6.442 10 N -0.336 5.336 11 C 0.001 3.999 12 H 0.116 0.884 13 C -0.154 4.154 14 C -0.136 4.136 15 H 0.101 0.899 16 C 0.012 3.988 17 N -0.167 5.167 18 C -0.041 4.041 19 N -0.314 5.314 20 C -0.118 4.118 21 N -0.176 5.176 22 C -0.182 4.182 23 N -0.172 5.172 24 C -0.060 4.060 25 H 0.248 0.752 26 H 0.137 0.863 27 H -0.222 1.222 28 H -0.207 1.207 29 H 0.179 0.821 30 H 0.168 0.832 31 H 0.255 0.745 32 H 0.147 0.853 33 H 0.102 0.898 34 H 0.159 0.841 35 H 0.120 0.880 36 H 0.273 0.727 37 H 0.246 0.754 38 H 0.062 0.938 39 H 0.134 0.866 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.259 2.522 -3.749 5.051 hybrid contribution -0.219 -0.819 1.163 1.439 sum -2.478 1.703 -2.586 3.965 Atomic orbital electron populations 1.86509 1.16555 1.82092 1.50603 1.25142 0.85694 1.10844 0.96177 0.93770 0.78092 0.74727 0.85585 1.21781 0.98366 0.95799 0.98405 1.21736 0.96273 0.93956 0.95882 1.22291 0.95413 1.02098 0.93728 1.21086 0.99032 0.91366 0.96148 1.18081 0.78196 0.85300 0.82739 1.90783 1.60289 1.17451 1.75720 1.45518 1.49745 1.16200 1.22093 1.22023 0.95023 0.97745 0.85090 0.88388 1.23305 0.93669 0.99737 0.98726 1.22857 0.94748 0.97805 0.98177 0.89930 1.22262 0.76928 1.05659 0.93942 1.50753 1.12905 1.18821 1.34176 1.26861 0.81827 0.98335 0.97065 1.70542 1.33346 1.12059 1.15498 1.26429 0.90301 0.95437 0.99639 1.77939 1.17430 1.10792 1.11475 1.23603 0.95420 0.97727 1.01414 1.67499 1.20615 1.08789 1.20334 1.23016 0.93654 1.00577 0.88709 0.75197 0.86290 1.22186 1.20728 0.82057 0.83244 0.74547 0.85287 0.89756 0.84147 0.88033 0.72712 0.75354 0.93770 0.86616 0.79811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.16 12.78 -148.98 -1.90 0.26 16 2 C -0.07 0.31 2.83 71.24 0.20 0.52 16 3 Si 0.77 -4.38 29.82 68.60 2.05 -2.34 16 4 C -0.14 0.39 5.40 -19.69 -0.11 0.28 16 5 C -0.05 0.06 9.76 22.45 0.22 0.28 16 6 C -0.11 -0.29 9.63 22.61 0.22 -0.08 16 7 C 0.06 0.28 6.75 41.89 0.28 0.57 16 8 C 0.57 3.98 7.81 86.88 0.68 4.65 16 9 O -0.56 -7.30 15.92 -3.75 -0.06 -7.36 16 10 N -0.69 -1.09 5.25 -442.59 -2.32 -3.41 16 11 C 0.11 -0.22 4.32 45.52 0.20 -0.02 16 12 H 0.10 0.06 7.46 -2.39 -0.02 0.04 16 13 C -0.12 0.99 7.38 31.12 0.23 1.22 16 14 C -0.12 0.67 3.76 -10.18 -0.04 0.63 16 15 H 0.08 -0.03 8.00 -2.39 -0.02 -0.05 16 16 C 0.13 -1.08 6.39 86.38 0.55 -0.53 16 17 N -0.38 0.11 3.69 -352.08 -1.30 -1.19 16 18 C 0.26 -0.17 12.63 180.36 2.28 2.11 16 19 N -0.59 -3.78 11.19 -203.99 -2.28 -6.06 16 20 C 0.18 1.06 13.03 180.76 2.36 3.42 16 21 N -0.35 -2.13 12.45 -61.24 -0.76 -2.89 16 22 C -0.14 0.50 7.44 31.21 0.23 0.73 16 23 N -0.46 -1.04 9.54 -184.91 -1.76 -2.80 16 24 C 0.10 -0.19 9.84 84.83 0.83 0.64 16 25 H 0.40 -4.68 8.70 -74.06 -0.64 -5.33 16 26 H 0.12 -0.49 7.96 -2.38 -0.02 -0.50 16 27 H -0.29 -0.64 7.11 99.48 0.71 0.07 16 28 H -0.28 0.25 7.11 99.48 0.71 0.95 16 29 H 0.16 -0.68 8.06 -2.91 -0.02 -0.71 16 30 H 0.15 0.38 7.64 -2.91 -0.02 0.36 16 31 H 0.42 -0.15 8.03 -92.71 -0.74 -0.89 16 32 H 0.13 -1.72 8.10 -2.39 -0.02 -1.74 16 33 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 34 H 0.14 -2.15 7.80 -2.38 -0.02 -2.17 16 35 H 0.10 -0.95 8.14 -2.39 -0.02 -0.97 16 36 H 0.26 -2.77 8.06 -2.91 -0.02 -2.80 16 37 H 0.23 0.03 8.06 -2.91 -0.02 0.01 16 38 H 0.04 0.12 8.14 -2.38 -0.02 0.10 16 39 H 0.12 -0.89 7.91 -2.39 -0.02 -0.91 16 40 H 0.19 -1.30 4.89 -2.91 -0.01 -1.32 16 Total: 0.00 -27.46 346.95 -0.47 -27.93 By element: Atomic # 1 Polarization: -16.31 SS G_CDS: -0.25 Total: -16.56 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 8.13 Total: 14.42 kcal Atomic # 7 Polarization: -7.92 SS G_CDS: -8.43 Total: -16.36 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -1.96 Total: -7.10 kcal Atomic # 14 Polarization: -4.38 SS G_CDS: 2.05 Total: -2.34 kcal Total: -27.46 -0.47 -27.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13287726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.822 kcal (2) G-P(sol) polarization free energy of solvation -27.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds