Wall clock time and date at job start Sun Mar 7 2021 04:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34659 * 124.85212 * 2 1 4 4 C 1.36771 * 108.39625 * 180.27830 * 3 2 1 5 5 C 1.47264 * 126.94385 * 179.71588 * 4 3 2 6 6 O 1.21626 * 120.00243 * 180.02562 * 5 4 3 7 7 N 1.34777 * 119.99707 * 0.02562 * 5 4 3 8 8 C 1.46502 * 119.99908 * 180.02562 * 7 5 4 9 9 H 1.09006 * 112.84872 * 334.66711 * 8 7 5 10 10 C 1.53779 * 113.61724 * 105.86422 * 8 7 5 11 11 C 1.54057 * 86.98414 * 89.16260 * 10 8 7 12 12 H 1.08999 * 113.61137 * 270.88274 * 11 10 8 13 13 C 1.53001 * 113.69278 * 139.99500 * 11 10 8 14 14 N 1.46493 * 109.47240 * 87.46906 * 13 11 10 15 15 C 1.34429 * 126.82793 * 124.71227 * 14 13 11 16 16 N 1.30830 * 108.08287 * 179.88931 * 15 14 13 17 17 C 1.33244 * 109.82465 * 0.37938 * 16 15 14 18 18 N 1.30715 * 108.94769 * 359.75989 * 17 16 15 19 19 C 1.53782 * 113.61398 * 203.47600 * 8 7 5 20 20 C 1.46685 * 106.11782 * 359.73442 * 4 3 2 21 21 C 1.34487 * 106.32922 * 359.97438 * 20 4 3 22 22 C 1.50699 * 125.56934 * 179.97438 * 21 20 4 23 23 O 1.42903 * 109.47152 * 150.03173 * 22 21 20 24 24 Si 1.86293 * 109.47431 * 30.03065 * 22 21 20 25 25 H 1.09003 * 109.47787 * 270.18772 * 1 2 3 26 26 H 1.09009 * 109.47175 * 30.18632 * 1 2 3 27 27 H 1.09002 * 109.47373 * 150.18163 * 1 2 3 28 28 H 1.08001 * 125.80612 * 359.97438 * 3 2 1 29 29 H 0.97000 * 120.00542 * 0.02562 * 7 5 4 30 30 H 1.08996 * 113.61511 * 203.66669 * 10 8 7 31 31 H 1.09005 * 113.61278 * 334.57095 * 10 8 7 32 32 H 1.09001 * 109.46884 * 207.46683 * 13 11 10 33 33 H 1.08993 * 109.47080 * 327.46319 * 13 11 10 34 34 H 1.08003 * 125.95591 * 0.02708 * 15 14 13 35 35 H 1.08000 * 125.52613 * 179.80469 * 17 16 15 36 36 H 1.08993 * 113.62062 * 25.42810 * 19 8 7 37 37 H 1.09002 * 113.61205 * 156.33758 * 19 8 7 38 38 H 1.07996 * 126.83622 * 179.97438 * 20 4 3 39 39 H 1.09008 * 109.47393 * 270.02568 * 22 21 20 40 40 H 0.96700 * 114.00311 * 180.02562 * 23 22 21 41 41 H 1.48506 * 109.99973 * 59.99460 * 24 22 21 42 42 H 1.48493 * 110.00375 * 181.31561 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2344 1.1050 0.0000 4 6 3.5461 0.7176 -0.0063 5 6 4.7283 1.5957 -0.0144 6 8 5.8446 1.1127 -0.0199 7 7 4.5733 2.9345 -0.0157 8 6 5.7494 3.8080 -0.0243 9 1 6.6332 3.3322 0.4009 10 6 6.0061 4.4823 -1.3824 11 6 5.0948 5.6250 -0.8955 12 1 4.0408 5.4718 -1.1273 13 6 5.5928 7.0178 -1.2868 14 7 5.0805 7.3643 -2.6147 15 6 4.3686 8.4561 -2.9441 16 7 4.1055 8.3983 -4.2243 17 6 4.6234 7.2853 -4.7423 18 7 5.2305 6.6190 -3.7956 19 6 5.4767 5.2138 0.5363 20 6 3.5375 -0.7492 -0.0038 21 6 2.2447 -1.1197 0.0042 22 6 1.7397 -2.5396 0.0090 23 8 0.4844 -2.5964 0.6894 24 14 2.9694 -3.6332 0.8821 25 1 -0.3635 0.0034 1.0276 26 1 -0.3634 0.8884 -0.5168 27 1 -0.3634 -0.8916 -0.5110 28 1 1.8767 2.1241 -0.0004 29 1 3.6831 3.3197 -0.0109 30 1 7.0428 4.7839 -1.5311 31 1 5.5997 3.9283 -2.2287 32 1 5.2389 7.7479 -0.5589 33 1 6.6826 7.0220 -1.3052 34 1 4.0684 9.2446 -2.2698 35 1 4.5537 6.9830 -5.7768 36 1 4.6435 5.2501 1.2379 37 1 6.3692 5.7150 0.9111 38 1 4.3980 -1.4018 -0.0077 39 1 1.6124 -2.8834 -1.0176 40 1 0.0994 -3.4825 0.7313 41 1 3.1519 -3.1748 2.2828 42 1 2.4983 -5.0413 0.8658 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_13287730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:40:42 Heat of formation + Delta-G solvation = 109.758946 kcal Electronic energy + Delta-G solvation = -25879.291884 eV Core-core repulsion = 22058.165414 eV Total energy + Delta-G solvation = -3821.126469 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.94627 -42.44792 -41.01464 -39.20506 -37.85778 -35.35557 -34.04979 -33.55649 -32.12519 -31.50736 -29.10063 -27.55992 -26.67408 -26.26048 -24.70297 -23.59960 -22.82340 -22.34320 -21.12986 -20.53448 -20.16537 -18.60328 -18.49016 -18.17326 -17.23790 -16.85810 -16.75734 -16.55847 -16.12441 -15.89507 -15.60070 -15.52724 -15.31026 -15.12200 -14.74375 -14.48013 -14.47514 -14.01519 -13.87207 -13.45018 -13.37028 -13.22991 -13.14642 -13.05408 -12.76041 -12.71828 -12.16087 -12.12479 -11.68609 -11.21279 -11.06063 -10.93750 -10.81970 -10.75805 -10.52373 -10.08829 -9.59189 -9.19049 -4.90838 0.70391 0.74729 0.99855 1.46211 1.49837 1.55687 1.85280 2.02820 2.04376 2.23544 2.51835 3.11227 3.34951 3.50648 3.56745 3.66313 3.69999 3.81720 3.85945 3.93134 4.01851 4.15531 4.24011 4.27038 4.35453 4.44055 4.46567 4.49855 4.62116 4.70755 4.75986 4.80259 4.85503 4.93655 4.97663 5.04014 5.08648 5.21750 5.36777 5.49331 5.60930 5.68075 5.97513 5.99301 6.20223 6.49547 6.61105 7.17358 7.32329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.427 5.427 3 C 0.067 3.933 4 C -0.260 4.260 5 C 0.590 3.410 6 O -0.591 6.591 7 N -0.700 5.700 8 C 0.109 3.891 9 H 0.082 0.918 10 C -0.138 4.138 11 C -0.108 4.108 12 H 0.090 0.910 13 C 0.130 3.870 14 N -0.377 5.377 15 C 0.256 3.744 16 N -0.586 5.586 17 C 0.182 3.818 18 N -0.343 5.343 19 C -0.113 4.113 20 C -0.161 4.161 21 C 0.015 3.985 22 C -0.046 4.046 23 O -0.553 6.553 24 Si 0.764 3.236 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.206 0.794 29 H 0.411 0.589 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.144 0.856 33 H 0.095 0.905 34 H 0.259 0.741 35 H 0.228 0.772 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.156 0.844 39 H 0.103 0.897 40 H 0.401 0.599 41 H -0.311 1.311 42 H -0.270 1.270 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.559 2.884 2.582 6.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.101 5.101 3 C -0.071 4.071 4 C -0.270 4.270 5 C 0.381 3.619 6 O -0.472 6.472 7 N -0.351 5.351 8 C 0.004 3.996 9 H 0.100 0.900 10 C -0.177 4.177 11 C -0.127 4.127 12 H 0.109 0.891 13 C 0.010 3.990 14 N -0.168 5.168 15 C -0.040 4.040 16 N -0.314 5.314 17 C -0.120 4.120 18 N -0.172 5.172 19 C -0.152 4.152 20 C -0.185 4.185 21 C -0.094 4.094 22 C -0.155 4.155 23 O -0.364 6.364 24 Si 0.669 3.331 25 H 0.095 0.905 26 H 0.122 0.878 27 H 0.113 0.887 28 H 0.222 0.778 29 H 0.247 0.753 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.162 0.838 33 H 0.113 0.887 34 H 0.275 0.725 35 H 0.244 0.756 36 H 0.113 0.887 37 H 0.137 0.863 38 H 0.174 0.826 39 H 0.120 0.880 40 H 0.252 0.748 41 H -0.238 1.238 42 H -0.195 1.195 Dipole moment (debyes) X Y Z Total from point charges -4.687 2.121 3.084 5.998 hybrid contribution -1.325 -0.311 0.101 1.365 sum -6.012 1.810 3.185 7.040 Atomic orbital electron populations 1.22324 0.74574 1.05615 1.04297 1.43725 1.08191 1.04770 1.53403 1.22360 0.89140 0.93109 1.02454 1.20295 0.92176 0.93896 1.20610 1.17640 0.87736 0.82166 0.74376 1.90745 1.27628 1.76112 1.52746 1.45344 1.09874 1.04670 1.75190 1.21894 0.89106 0.90993 0.97639 0.89984 1.23434 1.00462 0.97126 0.96649 1.22801 0.99861 0.92874 0.97162 0.89145 1.22260 1.00654 0.98426 0.77655 1.50776 1.40504 1.16574 1.08952 1.26899 0.91421 0.92211 0.93498 1.70543 1.28695 1.23212 1.08924 1.26418 0.94781 0.89594 1.01256 1.78040 1.25881 1.20666 0.92595 1.23271 1.04359 0.92519 0.95029 1.21748 0.95288 0.93654 1.07780 1.19935 0.90121 0.88167 1.11207 1.24385 0.92921 0.95830 1.02412 1.86482 1.34151 1.36439 1.79312 0.93474 0.85635 0.74676 0.79362 0.90516 0.87823 0.88707 0.77761 0.75272 0.89191 0.93533 0.83777 0.88685 0.72532 0.75592 0.88675 0.86285 0.82610 0.87977 0.74783 1.23843 1.19548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.37 9.81 127.77 1.25 0.89 16 2 N -0.43 -0.34 3.09 -533.24 -1.65 -1.98 16 3 C 0.07 -0.01 10.83 83.92 0.91 0.90 16 4 C -0.26 -1.71 6.29 -19.04 -0.12 -1.83 16 5 C 0.59 5.58 7.81 86.62 0.68 6.26 16 6 O -0.59 -10.95 16.59 -4.11 -0.07 -11.02 16 7 N -0.70 -0.74 5.25 -443.44 -2.33 -3.07 16 8 C 0.11 0.00 4.29 45.52 0.20 0.20 16 9 H 0.08 0.42 7.50 -2.38 -0.02 0.40 16 10 C -0.14 -0.04 7.45 31.21 0.23 0.19 16 11 C -0.11 0.71 3.74 -10.17 -0.04 0.67 16 12 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 13 C 0.13 -1.10 6.39 86.38 0.55 -0.55 16 14 N -0.38 0.36 3.69 -352.08 -1.30 -0.94 16 15 C 0.26 -0.47 12.63 180.36 2.28 1.80 16 16 N -0.59 -3.24 11.19 -204.00 -2.28 -5.52 16 17 C 0.18 0.99 13.03 180.76 2.36 3.34 16 18 N -0.34 -2.07 12.57 -61.24 -0.77 -2.84 16 19 C -0.11 0.99 7.38 31.12 0.23 1.22 16 20 C -0.16 -1.12 9.49 23.62 0.22 -0.90 16 21 C 0.01 0.05 6.17 40.98 0.25 0.31 16 22 C -0.05 0.06 2.85 71.24 0.20 0.27 16 23 O -0.55 1.31 10.32 -148.98 -1.54 -0.23 16 24 Si 0.76 -0.13 31.12 68.60 2.13 2.00 16 25 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 26 H 0.10 -1.03 8.13 -2.38 -0.02 -1.05 16 27 H 0.09 -0.47 6.75 -2.39 -0.02 -0.49 16 28 H 0.21 -1.84 7.45 -2.91 -0.02 -1.86 16 29 H 0.41 -2.24 7.65 -92.71 -0.71 -2.95 16 30 H 0.09 0.04 7.91 -2.39 -0.02 0.02 16 31 H 0.05 0.30 8.14 -2.38 -0.02 0.28 16 32 H 0.14 -2.34 8.09 -2.39 -0.02 -2.36 16 33 H 0.09 -0.79 7.85 -2.39 -0.02 -0.80 16 34 H 0.26 -3.18 8.06 -2.91 -0.02 -3.21 16 35 H 0.23 0.05 8.06 -2.91 -0.02 0.03 16 36 H 0.09 -1.05 8.14 -2.39 -0.02 -1.07 16 37 H 0.12 -1.40 8.10 -2.39 -0.02 -1.42 16 38 H 0.16 0.89 6.89 -2.91 -0.02 0.87 16 39 H 0.10 -0.57 7.96 -2.38 -0.02 -0.59 16 40 H 0.40 -4.04 8.74 -74.06 -0.65 -4.69 16 41 H -0.31 -3.00 7.11 99.48 0.71 -2.29 16 42 H -0.27 -0.47 7.11 99.48 0.71 0.24 16 Total: 0.00 -33.78 357.90 1.15 -32.64 By element: Atomic # 1 Polarization: -21.54 SS G_CDS: -0.26 Total: -21.80 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 9.20 Total: 12.76 kcal Atomic # 7 Polarization: -6.02 SS G_CDS: -8.33 Total: -14.35 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -1.61 Total: -11.25 kcal Atomic # 14 Polarization: -0.13 SS G_CDS: 2.13 Total: 2.00 kcal Total: -33.78 1.15 -32.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13287730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.395 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds