Wall clock time and date at job start Sun Mar 7 2021 04:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38979 * 119.95826 * 2 1 4 4 O 1.35712 * 119.91005 * 0.28183 * 3 2 1 5 5 C 1.39015 * 120.17537 * 179.97438 * 3 2 1 6 6 C 1.50701 * 119.95420 * 180.02562 * 5 3 2 7 7 O 1.42901 * 109.47011 * 75.00132 * 6 5 3 8 8 Si 1.86292 * 109.47259 * 195.00451 * 6 5 3 9 9 C 1.37680 * 120.08818 * 359.97438 * 5 3 2 10 10 C 1.39745 * 119.91499 * 0.02562 * 9 5 3 11 11 C 1.47599 * 120.09073 * 179.97438 * 10 9 5 12 12 O 1.21586 * 120.00053 * 0.02562 * 11 10 9 13 13 N 1.34783 * 120.00207 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00035 * 180.02562 * 13 11 10 15 15 H 1.09005 * 112.84994 * 23.80430 * 14 13 11 16 16 C 1.53770 * 113.61404 * 155.00348 * 14 13 11 17 17 C 1.53785 * 87.08350 * 89.11652 * 16 14 13 18 18 H 1.08996 * 113.61262 * 270.80604 * 17 16 14 19 19 C 1.52998 * 113.61621 * 139.97847 * 17 16 14 20 20 N 1.46496 * 109.47112 * 175.00327 * 19 17 16 21 21 C 1.34430 * 126.82628 * 125.00000 * 20 19 17 22 22 N 1.30826 * 108.08455 * 179.97438 * 21 20 19 23 23 C 1.33249 * 109.82606 * 0.02562 * 22 21 20 24 24 N 1.30714 * 108.94437 * 359.75128 * 23 22 21 25 25 C 1.53777 * 113.61468 * 252.50501 * 14 13 11 26 26 C 1.37722 * 119.95245 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46722 * 89.99272 * 1 2 3 28 28 H 1.08991 * 109.47090 * 209.99990 * 1 2 3 29 29 H 1.09003 * 109.46511 * 329.99946 * 1 2 3 30 30 H 0.96703 * 113.99179 * 269.72281 * 4 3 2 31 31 H 1.09000 * 109.47029 * 315.00244 * 6 5 3 32 32 H 0.96703 * 113.99876 * 299.99801 * 7 6 5 33 33 H 1.48505 * 109.99797 * 298.68205 * 8 6 5 34 34 H 1.48496 * 110.00127 * 59.99729 * 8 6 5 35 35 H 1.08001 * 120.04163 * 180.02562 * 9 5 3 36 36 H 0.96993 * 119.99608 * 0.02562 * 13 11 10 37 37 H 1.08995 * 113.61900 * 203.66570 * 16 14 13 38 38 H 1.09001 * 113.61630 * 334.56910 * 16 14 13 39 39 H 1.08998 * 109.47620 * 295.00310 * 19 17 16 40 40 H 1.09004 * 109.47134 * 55.00139 * 19 17 16 41 41 H 1.08001 * 125.95662 * 0.02562 * 21 20 19 42 42 H 1.07994 * 125.52938 * 179.97438 * 23 22 21 43 43 H 1.08998 * 113.61956 * 25.43011 * 25 14 13 44 44 H 1.09002 * 113.61800 * 156.33468 * 25 14 13 45 45 H 1.07996 * 120.04724 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2011 1.2041 0.0000 4 8 1.5198 2.3778 0.0058 5 6 3.5912 1.2094 0.0005 6 6 4.3387 2.5179 0.0011 7 8 4.2717 3.1042 1.3026 8 14 6.1200 2.2158 -0.4530 9 6 4.2860 0.0207 0.0016 10 6 3.5919 -1.1922 0.0016 11 6 4.3328 -2.4688 0.0022 12 8 5.5486 -2.4660 0.0031 13 7 3.6615 -3.6376 0.0027 14 6 4.3970 -4.9046 0.0038 15 1 5.4041 -4.8091 0.4096 16 6 3.6015 -6.0780 0.5997 17 6 3.0630 -6.3305 -0.8185 18 1 2.1504 -5.7787 -1.0436 19 6 2.9657 -7.8134 -1.1822 20 7 2.3348 -7.9535 -2.4969 21 6 2.8321 -8.6018 -3.5643 22 7 1.9685 -8.4975 -4.5415 23 6 0.9123 -7.7924 -4.1378 24 7 1.0878 -7.4413 -2.8910 25 6 4.3404 -5.6509 -1.3395 26 6 2.1947 -1.1933 -0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3632 0.8900 0.5139 30 1 1.3224 2.7222 -0.8760 31 1 3.8882 3.1940 -0.7255 32 1 3.3720 3.2894 1.6047 33 1 6.7544 1.3207 0.5478 34 1 6.2033 1.6062 -1.8045 35 1 5.3660 0.0257 0.0024 36 1 2.6916 -3.6397 0.0023 37 1 4.2299 -6.8842 0.9780 38 1 2.8341 -5.7695 1.3096 39 1 3.9654 -8.2469 -1.2109 40 1 2.3661 -8.3324 -0.4342 41 1 3.7791 -9.1192 -3.6075 42 1 0.0495 -7.5532 -4.7416 43 1 4.1694 -4.9977 -2.1951 44 1 5.1709 -6.3404 -1.4914 45 1 1.6547 -2.1285 -0.0014 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_13287732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:40:46 Heat of formation + Delta-G solvation = 35.388741 kcal Electronic energy + Delta-G solvation = -29624.084657 eV Core-core repulsion = 25418.250832 eV Total energy + Delta-G solvation = -4205.833825 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.00531 -42.01404 -41.08636 -39.66591 -37.78988 -37.67168 -35.58516 -34.26975 -34.00509 -32.18049 -31.83758 -29.11325 -28.14578 -26.96596 -26.81851 -25.51822 -24.20716 -22.94925 -22.50780 -22.26224 -21.79220 -20.35101 -19.66321 -19.06235 -18.33845 -18.06028 -17.85302 -17.09489 -16.91260 -16.74086 -16.30319 -16.17151 -15.97644 -15.68339 -15.49089 -15.28696 -15.18893 -15.01364 -14.84695 -14.38819 -13.99056 -13.89879 -13.81787 -13.57247 -13.46362 -13.34459 -13.03685 -12.92746 -12.81140 -12.43536 -12.30848 -12.20810 -11.82913 -11.51465 -11.43627 -11.22045 -11.12710 -10.98916 -10.80317 -10.55701 -10.34600 -10.12890 -9.83260 -4.97681 -0.60419 -0.11874 0.68178 1.22110 1.39198 1.43162 1.52029 1.80739 1.88342 1.99582 2.36246 2.91169 3.25982 3.31329 3.36070 3.41149 3.42969 3.44915 3.52334 3.71009 3.74928 3.86849 3.89950 3.95715 4.13612 4.15180 4.24815 4.27692 4.43599 4.45694 4.48522 4.57214 4.59329 4.68179 4.72937 4.73231 4.84318 4.87540 4.92809 4.95389 5.05177 5.08457 5.16228 5.29312 5.41186 5.44569 5.46355 5.92290 6.21464 6.56405 6.59466 6.88980 7.11698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.112 4.112 3 C 0.156 3.844 4 O -0.489 6.489 5 C -0.154 4.154 6 C -0.072 4.072 7 O -0.546 6.546 8 Si 0.801 3.199 9 C -0.080 4.080 10 C -0.153 4.153 11 C 0.559 3.441 12 O -0.581 6.581 13 N -0.693 5.693 14 C 0.105 3.895 15 H 0.090 0.910 16 C -0.116 4.116 17 C -0.113 4.113 18 H 0.089 0.911 19 C 0.132 3.868 20 N -0.376 5.376 21 C 0.255 3.745 22 N -0.586 5.586 23 C 0.186 3.814 24 N -0.346 5.346 25 C -0.144 4.144 26 C -0.059 4.059 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.417 0.583 31 H 0.105 0.895 32 H 0.379 0.621 33 H -0.305 1.305 34 H -0.272 1.272 35 H 0.113 0.887 36 H 0.413 0.587 37 H 0.126 0.874 38 H 0.088 0.912 39 H 0.138 0.862 40 H 0.102 0.898 41 H 0.255 0.745 42 H 0.232 0.768 43 H 0.046 0.954 44 H 0.112 0.888 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.326 -0.650 0.354 4.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.113 4.113 3 C 0.110 3.890 4 O -0.303 6.303 5 C -0.155 4.155 6 C -0.182 4.182 7 O -0.353 6.353 8 Si 0.706 3.294 9 C -0.099 4.099 10 C -0.156 4.156 11 C 0.347 3.653 12 O -0.462 6.462 13 N -0.344 5.344 14 C 0.000 4.000 15 H 0.108 0.892 16 C -0.154 4.154 17 C -0.132 4.132 18 H 0.107 0.893 19 C 0.011 3.989 20 N -0.167 5.167 21 C -0.041 4.041 22 N -0.314 5.314 23 C -0.117 4.117 24 N -0.175 5.175 25 C -0.182 4.182 26 C -0.077 4.077 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.279 0.721 31 H 0.123 0.877 32 H 0.229 0.771 33 H -0.234 1.234 34 H -0.199 1.199 35 H 0.130 0.870 36 H 0.252 0.748 37 H 0.144 0.856 38 H 0.106 0.894 39 H 0.156 0.844 40 H 0.120 0.880 41 H 0.271 0.729 42 H 0.248 0.752 43 H 0.065 0.935 44 H 0.130 0.870 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.673 -1.066 0.874 3.008 hybrid contribution -1.483 -0.558 -0.349 1.623 sum -4.157 -1.623 0.525 4.493 Atomic orbital electron populations 1.20798 0.87510 1.04525 1.03933 1.20518 0.98684 0.91525 1.00545 1.18298 0.87973 0.86408 0.96332 1.84670 1.75146 1.34755 1.35758 1.20775 0.94532 0.95974 1.04253 1.25115 1.12455 0.91272 0.89316 1.86701 1.33990 1.82577 1.32037 0.92773 0.75793 0.84922 0.75933 1.20986 0.99413 0.92098 0.97389 1.19847 0.94762 0.92443 1.08578 1.18406 0.86760 0.84720 0.75372 1.90782 1.15421 1.88148 1.51820 1.45474 1.10720 1.04429 1.73772 1.21997 0.97115 0.82626 0.98271 0.89226 1.23311 0.99861 0.96942 0.95316 1.22815 0.98210 0.94842 0.97379 0.89275 1.22249 0.99813 0.97409 0.79381 1.50741 1.13462 1.39277 1.13204 1.26837 1.00588 0.94577 0.82132 1.70548 1.04658 1.24083 1.32122 1.26447 0.98855 0.95161 0.91244 1.77917 0.99867 1.23926 1.15762 1.23556 0.98788 0.99473 0.96423 1.21367 0.91188 0.99485 0.95662 0.89373 0.89807 0.90308 0.72106 0.87684 0.77143 1.23376 1.19857 0.86968 0.74824 0.85586 0.89379 0.84433 0.87953 0.72899 0.75235 0.93475 0.86973 0.82096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.75 9.79 71.24 0.70 1.45 16 2 C -0.11 0.18 5.89 -19.81 -0.12 0.06 16 3 C 0.16 0.01 6.62 22.63 0.15 0.16 16 4 O -0.49 2.46 11.40 -90.33 -1.03 1.43 16 5 C -0.15 -0.73 5.27 -19.81 -0.10 -0.84 16 6 C -0.07 -0.16 2.33 71.24 0.17 0.00 16 7 O -0.55 -2.31 12.65 -148.98 -1.89 -4.20 16 8 Si 0.80 3.73 30.40 68.60 2.09 5.82 16 9 C -0.08 -0.79 8.20 22.50 0.18 -0.61 16 10 C -0.15 -1.01 5.87 -20.08 -0.12 -1.13 16 11 C 0.56 5.00 7.76 86.71 0.67 5.67 16 12 O -0.58 -10.47 15.94 -3.99 -0.06 -10.53 16 13 N -0.69 -0.31 5.21 -443.14 -2.31 -2.62 16 14 C 0.11 -0.18 4.32 45.51 0.20 0.01 16 15 H 0.09 0.24 7.46 -2.38 -0.02 0.23 16 16 C -0.12 1.05 7.39 31.12 0.23 1.28 16 17 C -0.11 0.81 3.76 -10.26 -0.04 0.77 16 18 H 0.09 -0.30 8.01 -2.39 -0.02 -0.32 16 19 C 0.13 -1.18 6.39 86.38 0.55 -0.63 16 20 N -0.38 0.52 3.69 -352.07 -1.30 -0.78 16 21 C 0.25 -0.34 12.63 180.36 2.28 1.94 16 22 N -0.59 -3.25 11.19 -204.00 -2.28 -5.53 16 23 C 0.19 0.81 13.03 180.76 2.36 3.17 16 24 N -0.35 -1.54 12.46 -61.24 -0.76 -2.30 16 25 C -0.14 0.53 7.43 31.12 0.23 0.76 16 26 C -0.06 0.04 9.18 22.51 0.21 0.25 16 27 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 28 H 0.08 -0.72 8.08 -2.39 -0.02 -0.74 16 29 H 0.08 -0.47 7.52 -2.39 -0.02 -0.49 16 30 H 0.42 -5.71 9.06 -74.05 -0.67 -6.38 16 31 H 0.11 -0.41 7.83 -2.39 -0.02 -0.43 16 32 H 0.38 -0.19 8.58 -74.06 -0.64 -0.83 16 33 H -0.31 -4.29 6.81 99.48 0.68 -3.62 16 34 H -0.27 -2.24 7.11 99.48 0.71 -1.53 16 35 H 0.11 1.66 4.51 -2.91 -0.01 1.64 16 36 H 0.41 -2.17 6.72 -92.71 -0.62 -2.80 16 37 H 0.13 -1.65 8.10 -2.39 -0.02 -1.67 16 38 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 39 H 0.14 -2.12 7.79 -2.39 -0.02 -2.14 16 40 H 0.10 -1.04 8.14 -2.38 -0.02 -1.06 16 41 H 0.26 -2.81 8.06 -2.91 -0.02 -2.84 16 42 H 0.23 -0.32 8.06 -2.91 -0.02 -0.34 16 43 H 0.05 0.09 8.14 -2.39 -0.02 0.07 16 44 H 0.11 -0.80 7.90 -2.39 -0.02 -0.82 16 45 H 0.16 -1.20 6.39 -2.91 -0.02 -1.22 16 Total: 0.00 -32.49 379.33 -0.86 -33.34 By element: Atomic # 1 Polarization: -26.09 SS G_CDS: -0.85 Total: -26.94 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 7.54 Total: 12.32 kcal Atomic # 7 Polarization: -4.58 SS G_CDS: -6.65 Total: -11.24 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -2.98 Total: -13.30 kcal Atomic # 14 Polarization: 3.73 SS G_CDS: 2.09 Total: 5.82 kcal Total: -32.49 -0.86 -33.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13287732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.733 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds