Wall clock time and date at job start Sun Mar 7 2021 04:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86299 * 109.47493 * 2 1 4 4 C 1.50699 * 109.47449 * 120.00191 * 2 1 3 5 5 C 1.34848 * 125.90445 * 218.37759 * 4 2 1 6 6 C 1.40947 * 107.46846 * 180.22791 * 5 4 2 7 7 C 1.34848 * 107.46806 * 359.75849 * 6 5 4 8 8 N 1.36567 * 108.19897 * 359.97438 * 7 6 5 9 9 C 1.40208 * 125.66666 * 179.97438 * 8 7 6 10 10 C 1.38826 * 120.06413 * 56.09216 * 9 8 7 11 11 C 1.38117 * 119.93373 * 180.02562 * 10 9 8 12 12 C 1.38287 * 120.06360 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.93067 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47160 * 89.99811 * 13 12 11 15 15 O 1.21284 * 120.00366 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00123 * 179.97438 * 14 13 12 17 17 C 1.46503 * 120.00429 * 180.02562 * 16 14 13 18 18 H 1.09000 * 112.90108 * 336.25036 * 17 16 14 19 19 C 1.53774 * 113.61896 * 107.50041 * 17 16 14 20 20 C 1.53787 * 87.07990 * 89.11706 * 19 17 16 21 21 H 1.08996 * 113.69473 * 270.87484 * 20 19 17 22 22 C 1.52999 * 113.61220 * 139.98111 * 20 19 17 23 23 N 1.46498 * 109.47139 * 87.50605 * 22 20 19 24 24 C 1.34425 * 126.82421 * 124.99663 * 23 22 20 25 25 N 1.30834 * 108.07845 * 179.97438 * 24 23 22 26 26 C 1.33241 * 109.82698 * 0.02562 * 25 24 23 27 27 N 1.30706 * 108.94826 * 0.25819 * 26 25 24 28 28 C 1.53775 * 113.61493 * 205.00301 * 17 16 14 29 29 C 1.38271 * 120.13137 * 0.23095 * 12 11 10 30 30 C 1.38121 * 120.06816 * 359.48990 * 29 12 11 31 31 H 0.96701 * 113.99688 * 305.21879 * 1 2 3 32 32 H 1.09000 * 109.47272 * 240.00368 * 2 1 3 33 33 H 1.48500 * 110.00395 * 300.00532 * 3 2 1 34 34 H 1.48504 * 109.99917 * 61.31842 * 3 2 1 35 35 H 1.08005 * 126.26825 * 359.97438 * 5 4 2 36 36 H 1.07997 * 126.26382 * 179.72016 * 6 5 4 37 37 H 1.07998 * 125.90151 * 180.02562 * 7 6 5 38 38 H 1.08003 * 120.03120 * 0.04539 * 10 9 8 39 39 H 1.07996 * 119.97116 * 180.02562 * 11 10 9 40 40 H 1.08995 * 109.47663 * 329.99792 * 13 12 11 41 41 H 1.09002 * 109.46813 * 209.99827 * 13 12 11 42 42 H 0.97005 * 119.99918 * 359.97438 * 16 14 13 43 43 H 1.09006 * 113.61474 * 334.57117 * 19 17 16 44 44 H 1.08992 * 113.62033 * 203.66990 * 19 17 16 45 45 H 1.08997 * 109.47196 * 327.50395 * 22 20 19 46 46 H 1.09003 * 109.46998 * 207.50555 * 22 20 19 47 47 H 1.08002 * 125.96174 * 359.97438 * 24 23 22 48 48 H 1.08008 * 125.52140 * 180.02562 * 26 25 24 49 49 H 1.09000 * 113.61467 * 156.33264 * 28 17 16 50 50 H 1.08997 * 113.69332 * 25.44265 * 28 17 16 51 51 H 1.08001 * 119.96349 * 179.74778 * 29 12 11 52 52 H 1.07996 * 120.03870 * 180.25751 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 3.0023 -0.3532 1.9679 6 6 3.1217 -1.2846 3.0191 7 6 2.1163 -2.1736 2.8885 8 7 1.3782 -1.8249 1.7936 9 6 0.2450 -2.5026 1.3220 10 6 -0.8410 -2.7098 2.1615 11 6 -1.9557 -3.3782 1.6943 12 6 -1.9904 -3.8413 0.3917 13 6 -3.2079 -4.5707 -0.1148 14 6 -4.1767 -3.5801 -0.7073 15 8 -3.9050 -2.3981 -0.7178 16 7 -5.3446 -4.0076 -1.2266 17 6 -6.2862 -3.0446 -1.8031 18 1 -6.1568 -2.0367 -1.4088 19 6 -6.3622 -3.1006 -3.3380 20 6 -7.4659 -4.1577 -3.1663 21 1 -7.0893 -5.1790 -3.1101 22 6 -8.6211 -4.0042 -4.1576 23 7 -8.3087 -4.7347 -5.3885 24 6 -9.0586 -5.6842 -5.9742 25 7 -8.4345 -6.0876 -7.0510 26 6 -7.2880 -5.4221 -7.1849 27 7 -7.1635 -4.5862 -6.1878 28 6 -7.7460 -3.5279 -1.7916 29 6 -0.9081 -3.6411 -0.4452 30 6 0.2071 -2.9684 0.0146 31 1 -0.3933 0.5095 0.7217 32 1 1.7923 -0.5138 -0.8900 33 1 1.5615 2.4680 -1.2084 34 1 1.5879 2.4585 1.2243 35 1 3.6522 0.4896 1.7842 36 1 3.8801 -1.2862 3.7880 37 1 1.9269 -3.0154 3.5380 38 1 -0.8144 -2.3483 3.1789 39 1 -2.8011 -3.5393 2.3467 40 1 -3.6862 -5.0969 0.7113 41 1 -2.9096 -5.2887 -0.8788 42 1 -5.5614 -4.9531 -1.2193 43 1 -5.4568 -3.4868 -3.8062 44 1 -6.7123 -2.1736 -3.7920 45 1 -8.7643 -2.9485 -4.3881 46 1 -9.5334 -4.4070 -3.7176 47 1 -10.0102 -6.0503 -5.6180 48 1 -6.5752 -5.5548 -7.9855 49 1 -8.4744 -2.7177 -1.8228 50 1 -7.9592 -4.2589 -1.0117 51 1 -0.9364 -4.0076 -1.4607 52 1 1.0505 -2.8086 -0.6407 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_13287746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:40:50 Heat of formation + Delta-G solvation = 145.741932 kcal Electronic energy + Delta-G solvation = -35406.944821 eV Core-core repulsion = 30763.398891 eV Total energy + Delta-G solvation = -4643.545930 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.179 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.98185 -42.69541 -41.43173 -40.23270 -39.19877 -37.90042 -35.41028 -34.89320 -33.88439 -32.20542 -32.16004 -31.78507 -31.07815 -29.19860 -27.74876 -26.73658 -26.08678 -24.67362 -24.01540 -23.44370 -22.85918 -22.38884 -21.75836 -21.42471 -20.65348 -20.33216 -19.33896 -18.45730 -18.03080 -17.63205 -17.27569 -17.11112 -16.77929 -16.61937 -16.31159 -16.04542 -15.88395 -15.84277 -15.50681 -15.32846 -15.25939 -14.88364 -14.77725 -14.58477 -14.54776 -14.44003 -14.19114 -14.04844 -13.92956 -13.54071 -13.39502 -13.23454 -13.18921 -12.96895 -12.83943 -12.65162 -12.37498 -12.19534 -12.15803 -11.91305 -11.73446 -11.27994 -11.08699 -10.97126 -10.95657 -10.79390 -10.56381 -10.26602 -10.10061 -10.04974 -9.25855 -9.09465 -4.95996 -0.03729 0.29098 0.71073 1.03438 1.33950 1.45688 1.56813 1.61555 1.79476 1.98589 2.01233 2.07240 2.09252 2.66219 3.22160 3.29812 3.45342 3.53773 3.55580 3.64148 3.65389 3.69933 3.75937 3.83164 3.94717 3.96567 4.11820 4.12511 4.19283 4.21672 4.26596 4.42720 4.43144 4.48788 4.49487 4.57636 4.58162 4.61506 4.67206 4.73641 4.78900 4.85282 4.90783 4.98246 5.02012 5.13921 5.16356 5.17719 5.25638 5.32955 5.33852 5.44211 5.45838 5.57507 5.74291 5.92373 5.95609 6.17268 6.33048 6.47563 6.49375 7.14038 7.21932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.066 4.066 3 Si 0.807 3.193 4 C -0.028 4.028 5 C -0.192 4.192 6 C -0.200 4.200 7 C -0.018 4.018 8 N -0.399 5.399 9 C 0.118 3.882 10 C -0.125 4.125 11 C -0.095 4.095 12 C -0.068 4.068 13 C -0.097 4.097 14 C 0.513 3.487 15 O -0.577 6.577 16 N -0.703 5.703 17 C 0.110 3.890 18 H 0.079 0.921 19 C -0.139 4.139 20 C -0.108 4.108 21 H 0.093 0.907 22 C 0.130 3.870 23 N -0.378 5.378 24 C 0.256 3.744 25 N -0.585 5.585 26 C 0.183 3.817 27 N -0.345 5.345 28 C -0.114 4.114 29 C -0.100 4.100 30 C -0.108 4.108 31 H 0.377 0.623 32 H 0.117 0.883 33 H -0.297 1.297 34 H -0.288 1.288 35 H 0.169 0.831 36 H 0.159 0.841 37 H 0.177 0.823 38 H 0.132 0.868 39 H 0.147 0.853 40 H 0.137 0.863 41 H 0.128 0.872 42 H 0.416 0.584 43 H 0.047 0.953 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.144 0.856 47 H 0.259 0.741 48 H 0.228 0.772 49 H 0.115 0.885 50 H 0.097 0.903 51 H 0.136 0.864 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.454 -4.877 4.072 7.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.174 4.174 3 Si 0.709 3.291 4 C -0.137 4.137 5 C -0.216 4.216 6 C -0.223 4.223 7 C -0.146 4.146 8 N -0.073 5.073 9 C 0.028 3.972 10 C -0.144 4.144 11 C -0.114 4.114 12 C -0.068 4.068 13 C -0.136 4.136 14 C 0.301 3.699 15 O -0.456 6.456 16 N -0.355 5.355 17 C 0.004 3.996 18 H 0.097 0.903 19 C -0.178 4.178 20 C -0.127 4.127 21 H 0.111 0.889 22 C 0.009 3.991 23 N -0.168 5.168 24 C -0.040 4.040 25 N -0.313 5.313 26 C -0.120 4.120 27 N -0.173 5.173 28 C -0.153 4.153 29 C -0.119 4.119 30 C -0.127 4.127 31 H 0.224 0.776 32 H 0.135 0.865 33 H -0.225 1.225 34 H -0.214 1.214 35 H 0.186 0.814 36 H 0.176 0.824 37 H 0.195 0.805 38 H 0.150 0.850 39 H 0.165 0.835 40 H 0.155 0.845 41 H 0.146 0.854 42 H 0.253 0.747 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.111 0.889 46 H 0.162 0.838 47 H 0.275 0.725 48 H 0.244 0.756 49 H 0.133 0.867 50 H 0.116 0.884 51 H 0.154 0.846 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.184 -3.462 3.395 6.404 hybrid contribution -0.978 -0.382 0.273 1.085 sum -5.161 -3.844 3.667 7.407 Atomic orbital electron populations 1.86650 1.18438 1.74980 1.54632 1.25084 0.83465 1.12459 0.96402 0.93542 0.89781 0.69496 0.76239 1.21240 0.99480 0.92325 1.00686 1.21047 0.99464 1.03552 0.97560 1.21234 1.01479 0.97400 1.02230 1.22377 0.95619 1.03711 0.92889 1.41579 1.21263 1.21456 1.22974 1.17755 0.87087 0.98031 0.94318 1.21150 0.92329 1.00658 1.00244 1.21095 0.97658 0.96911 0.95724 1.19561 0.94834 0.98621 0.93797 1.20758 0.91932 0.96849 1.04110 1.21031 0.82342 0.89425 0.77091 1.90770 1.76558 1.19908 1.58341 1.45580 1.18130 1.11372 1.60391 1.21847 0.90488 0.93645 0.93638 0.90292 1.23381 0.99035 0.99566 0.95835 1.22757 0.95222 0.99410 0.95281 0.88913 1.22261 0.99957 0.97758 0.79094 1.50769 1.14419 1.30282 1.21362 1.26912 0.99370 0.88181 0.89523 1.70547 1.09076 1.30768 1.20924 1.26421 0.95687 0.91871 0.98005 1.78026 1.06967 1.25438 1.06871 1.23264 0.94450 1.01829 0.95719 1.21046 0.92617 0.98262 0.99933 1.20980 0.99344 0.97911 0.94473 0.77550 0.86516 1.22482 1.21444 0.81379 0.82380 0.80537 0.84968 0.83535 0.84470 0.85412 0.74676 0.93437 0.89651 0.88914 0.83779 0.72501 0.75573 0.86687 0.88434 0.84644 0.86305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -5.12 10.98 -148.98 -1.64 -6.75 16 2 C -0.07 -0.33 2.48 71.24 0.18 -0.15 16 3 Si 0.81 1.31 30.79 68.60 2.11 3.42 16 4 C -0.03 -0.18 6.12 41.04 0.25 0.07 16 5 C -0.19 -0.76 9.39 22.15 0.21 -0.55 16 6 C -0.20 -0.79 10.86 22.15 0.24 -0.55 16 7 C -0.02 -0.09 11.21 83.18 0.93 0.84 16 8 N -0.40 -2.91 2.84 -333.40 -0.95 -3.86 16 9 C 0.12 0.87 4.69 38.08 0.18 1.05 16 10 C -0.12 -0.63 9.77 22.38 0.22 -0.41 16 11 C -0.10 -0.25 9.69 22.25 0.22 -0.03 16 12 C -0.07 -0.16 4.38 -19.85 -0.09 -0.25 16 13 C -0.10 0.42 5.83 29.10 0.17 0.59 16 14 C 0.51 1.08 7.82 87.66 0.69 1.77 16 15 O -0.58 -7.62 15.64 -3.04 -0.05 -7.67 16 16 N -0.70 2.63 5.26 -440.05 -2.32 0.32 16 17 C 0.11 -0.26 4.32 45.51 0.20 -0.06 16 18 H 0.08 0.27 7.47 -2.39 -0.02 0.25 16 19 C -0.14 0.15 7.43 31.12 0.23 0.38 16 20 C -0.11 0.83 3.72 -10.27 -0.04 0.79 16 21 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 22 C 0.13 -1.16 6.39 86.38 0.55 -0.61 16 23 N -0.38 0.53 3.69 -352.07 -1.30 -0.77 16 24 C 0.26 -0.56 12.63 180.36 2.28 1.71 16 25 N -0.59 -3.05 11.19 -204.00 -2.28 -5.33 16 26 C 0.18 0.92 13.03 180.77 2.36 3.28 16 27 N -0.34 -1.91 12.56 -61.24 -0.77 -2.68 16 28 C -0.11 1.17 7.39 31.12 0.23 1.40 16 29 C -0.10 -0.49 9.69 22.25 0.22 -0.28 16 30 C -0.11 -0.80 8.55 22.38 0.19 -0.61 16 31 H 0.38 2.32 8.60 -74.06 -0.64 1.68 16 32 H 0.12 0.44 7.96 -2.39 -0.02 0.43 16 33 H -0.30 -2.46 7.11 99.48 0.71 -1.75 16 34 H -0.29 -1.92 7.11 99.48 0.71 -1.21 16 35 H 0.17 -0.28 6.59 -2.91 -0.02 -0.30 16 36 H 0.16 -0.03 8.06 -2.91 -0.02 -0.05 16 37 H 0.18 0.12 8.06 -2.91 -0.02 0.10 16 38 H 0.13 0.39 8.06 -2.91 -0.02 0.37 16 39 H 0.15 -0.31 8.06 -2.91 -0.02 -0.33 16 40 H 0.14 -1.44 8.08 -2.39 -0.02 -1.46 16 41 H 0.13 -1.10 8.08 -2.39 -0.02 -1.12 16 42 H 0.42 -4.22 8.70 -92.70 -0.81 -5.03 16 43 H 0.05 0.23 8.14 -2.38 -0.02 0.21 16 44 H 0.08 0.00 7.90 -2.39 -0.02 -0.02 16 45 H 0.09 -0.78 7.84 -2.39 -0.02 -0.80 16 46 H 0.14 -2.40 8.09 -2.39 -0.02 -2.42 16 47 H 0.26 -3.27 8.06 -2.91 -0.02 -3.29 16 48 H 0.23 -0.03 8.06 -2.91 -0.02 -0.05 16 49 H 0.11 -1.43 8.10 -2.39 -0.02 -1.45 16 50 H 0.10 -1.25 8.14 -2.39 -0.02 -1.27 16 51 H 0.14 0.26 8.06 -2.91 -0.02 0.24 16 52 H 0.12 0.87 8.06 -2.91 -0.02 0.85 16 Total: 0.00 -33.81 438.86 1.77 -32.04 By element: Atomic # 1 Polarization: -16.65 SS G_CDS: -0.45 Total: -17.09 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 9.40 Total: 8.37 kcal Atomic # 7 Polarization: -4.70 SS G_CDS: -7.61 Total: -12.32 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -1.68 Total: -14.42 kcal Atomic # 14 Polarization: 1.31 SS G_CDS: 2.11 Total: 3.42 kcal Total: -33.81 1.77 -32.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13287746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.780 kcal (2) G-P(sol) polarization free energy of solvation -33.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds