Wall clock time and date at job start Sun Mar 7 2021 04:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36422 * 125.79802 * 2 1 4 4 C 1.47375 * 127.19279 * 0.02562 * 3 2 1 5 5 O 1.21614 * 120.00399 * 0.14788 * 4 3 2 6 6 N 1.34781 * 119.99846 * 180.15399 * 4 3 2 7 7 C 1.46498 * 119.99839 * 179.97438 * 6 4 3 8 8 H 1.09002 * 112.85086 * 336.19550 * 7 6 4 9 9 C 1.53783 * 113.61273 * 107.49853 * 7 6 4 10 10 C 1.53780 * 87.08068 * 89.11722 * 9 7 6 11 11 H 1.09002 * 113.68937 * 270.87129 * 10 9 7 12 12 C 1.52997 * 113.61854 * 139.97645 * 10 9 7 13 13 N 1.46510 * 109.46795 * 87.50356 * 12 10 9 14 14 C 1.34427 * 126.82251 * 125.00318 * 13 12 10 15 15 N 1.30825 * 108.07573 * 179.97438 * 14 13 12 16 16 C 1.33243 * 109.83085 * 359.97438 * 15 14 13 17 17 N 1.30711 * 108.94321 * 359.75513 * 16 15 14 18 18 C 1.53778 * 113.61366 * 204.99612 * 7 6 4 19 19 C 1.47020 * 105.61327 * 180.12518 * 3 2 1 20 20 C 1.34179 * 105.95633 * 359.63346 * 19 3 2 21 21 C 1.50699 * 125.44106 * 180.26264 * 20 19 3 22 22 O 1.42907 * 109.46900 * 65.00013 * 21 20 19 23 23 Si 1.86299 * 109.47437 * 184.99940 * 21 20 19 24 24 O 1.33647 * 125.80337 * 179.71288 * 2 1 3 25 25 H 1.09004 * 109.46677 * 180.31292 * 1 2 3 26 26 H 1.08999 * 109.47232 * 300.30480 * 1 2 3 27 27 H 1.08997 * 109.47474 * 60.31492 * 1 2 3 28 28 H 0.96996 * 120.00115 * 359.97438 * 6 4 3 29 29 H 1.08998 * 113.61029 * 203.66029 * 9 7 6 30 30 H 1.08997 * 113.61533 * 334.56817 * 9 7 6 31 31 H 1.09004 * 109.47519 * 207.49793 * 12 10 9 32 32 H 1.08994 * 109.47437 * 327.50869 * 12 10 9 33 33 H 1.08001 * 125.95833 * 359.97438 * 14 13 12 34 34 H 1.08000 * 125.52875 * 180.02562 * 16 15 14 35 35 H 1.09005 * 113.61404 * 25.43556 * 18 7 6 36 36 H 1.08998 * 113.61215 * 156.25145 * 18 7 6 37 37 H 1.08002 * 127.02488 * 179.90021 * 19 3 2 38 38 H 1.08995 * 109.47038 * 305.00371 * 21 20 19 39 39 H 0.96699 * 114.00177 * 60.00425 * 22 21 20 40 40 H 1.48497 * 110.00167 * 180.02562 * 23 21 20 41 41 H 1.48507 * 109.99681 * 301.32073 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1065 0.0000 4 6 1.8739 2.5158 0.0005 5 8 0.6889 2.7892 0.0037 6 7 2.7929 3.5016 -0.0027 7 6 2.3644 4.9025 -0.0027 8 1 1.3607 5.0381 -0.4057 9 6 2.5929 5.6166 1.3399 10 6 3.9896 5.9884 0.8149 11 1 4.7538 5.2438 1.0379 12 6 4.4221 7.4106 1.1771 13 7 5.0722 7.4038 2.4900 14 6 6.2977 7.8710 2.7847 15 7 6.5080 7.6818 4.0620 16 6 5.4442 7.0995 4.6138 17 7 4.5361 6.9140 3.6921 18 6 3.4038 5.8646 -0.6016 19 6 3.6849 0.5992 -0.0031 20 6 3.5860 -0.7389 0.0036 21 6 4.7460 -1.7009 0.0092 22 8 5.4754 -1.5604 1.2300 23 14 4.1072 -3.4450 -0.1354 24 8 2.2889 -1.0839 0.0054 25 1 -0.3633 -1.0277 0.0056 26 1 -0.3633 0.5185 0.8872 27 1 -0.3634 0.5089 -0.8928 28 1 3.7381 3.2836 -0.0050 29 1 1.9410 6.4766 1.4935 30 1 2.6134 4.9416 2.1955 31 1 5.1218 7.7797 0.4272 32 1 3.5470 8.0596 1.2083 33 1 6.9882 8.3236 2.0884 34 1 5.3462 6.8289 5.6548 35 1 4.0791 5.3899 -1.3135 36 1 2.9735 6.7918 -0.9801 37 1 4.5928 1.1841 -0.0055 38 1 5.4024 -1.4833 -0.8333 39 1 4.9525 -1.7395 2.0235 40 1 5.2415 -4.4034 -0.1305 41 1 3.1858 -3.7433 0.9904 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688106_13308374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:41:00 Heat of formation + Delta-G solvation = 72.648598 kcal Electronic energy + Delta-G solvation = -26177.917526 eV Core-core repulsion = 22257.463169 eV Total energy + Delta-G solvation = -3920.454357 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.77034 -42.98296 -41.22309 -39.37493 -38.21965 -35.46296 -34.35686 -33.64960 -33.06195 -32.11782 -29.65208 -29.04097 -26.88346 -26.07953 -24.92640 -23.96482 -22.88800 -22.56001 -22.26189 -20.78120 -20.31305 -19.06639 -18.37373 -17.99746 -17.70810 -17.08533 -16.95229 -16.68094 -16.23522 -16.07658 -15.91824 -15.73573 -15.43482 -15.21278 -14.84305 -14.67459 -14.32753 -14.19901 -14.04730 -13.94546 -13.86844 -13.62045 -13.17723 -13.01425 -12.94554 -12.86689 -12.36035 -12.11901 -11.80616 -11.42720 -11.11493 -10.91740 -10.91394 -10.75622 -10.72093 -10.60581 -10.10349 -9.59341 -5.03905 0.27988 0.69425 0.80293 1.07313 1.32070 1.39531 1.66062 1.87373 2.06633 2.08728 2.32002 3.05619 3.10563 3.27995 3.30723 3.40172 3.46130 3.61325 3.73155 3.73451 3.86112 3.95829 3.98603 4.08635 4.21614 4.22764 4.36884 4.39945 4.50316 4.56152 4.56671 4.58775 4.68527 4.75899 4.83604 5.00555 5.02397 5.07389 5.17876 5.30560 5.49987 5.51571 5.82623 5.87369 6.16051 6.45485 7.15809 7.21020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.097 3.903 3 C -0.254 4.254 4 C 0.596 3.404 5 O -0.536 6.536 6 N -0.708 5.708 7 C 0.121 3.879 8 H 0.108 0.892 9 C -0.135 4.135 10 C -0.123 4.123 11 H 0.094 0.906 12 C 0.137 3.863 13 N -0.378 5.378 14 C 0.251 3.749 15 N -0.547 5.547 16 C 0.196 3.804 17 N -0.312 5.312 18 C -0.137 4.137 19 C -0.148 4.148 20 C -0.054 4.054 21 C -0.035 4.035 22 O -0.521 6.521 23 Si 0.702 3.298 24 O -0.167 6.167 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.400 0.600 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.218 0.782 34 H 0.216 0.784 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.157 0.843 38 H 0.138 0.862 39 H 0.381 0.619 40 H -0.248 1.248 41 H -0.255 1.255 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 0.191 -5.133 5.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.043 3.957 3 C -0.259 4.259 4 C 0.385 3.615 5 O -0.414 6.414 6 N -0.358 5.358 7 C 0.015 3.985 8 H 0.126 0.874 9 C -0.173 4.173 10 C -0.142 4.142 11 H 0.113 0.887 12 C 0.015 3.985 13 N -0.170 5.170 14 C -0.046 4.046 15 N -0.274 5.274 16 C -0.107 4.107 17 N -0.139 5.139 18 C -0.175 4.175 19 C -0.167 4.167 20 C -0.102 4.102 21 C -0.144 4.144 22 O -0.328 6.328 23 Si 0.601 3.399 24 O -0.064 6.064 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.118 0.882 28 H 0.235 0.765 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.234 0.766 34 H 0.232 0.768 35 H 0.098 0.902 36 H 0.120 0.880 37 H 0.174 0.826 38 H 0.155 0.845 39 H 0.229 0.771 40 H -0.172 1.172 41 H -0.179 1.179 Dipole moment (debyes) X Y Z Total from point charges -0.072 -0.785 -4.925 4.988 hybrid contribution 0.978 0.749 0.970 1.568 sum 0.906 -0.036 -3.955 4.057 Atomic orbital electron populations 1.20571 0.83232 1.04106 1.05507 1.22918 0.94101 0.82846 0.95805 1.21099 0.93240 0.93730 1.17811 1.17145 0.85373 0.83637 0.75387 1.90803 1.16468 1.84026 1.50091 1.45415 1.09613 1.05113 1.75701 1.21819 0.99598 0.79863 0.97202 0.87384 1.23417 0.95220 1.00949 0.97738 1.22902 0.98386 0.95766 0.97113 0.88750 1.21926 0.99111 0.98458 0.78970 1.50601 1.13028 1.44782 1.08546 1.26123 0.87546 0.96634 0.94289 1.70559 1.28508 1.21999 1.06334 1.26069 0.87127 0.96854 1.00675 1.78093 1.22739 1.22335 0.90770 1.23356 0.98218 1.00389 0.95583 1.22567 0.96417 0.93514 1.04215 1.22553 0.82912 0.95554 1.09211 1.24367 0.91288 1.08019 0.90725 1.86663 1.39371 1.91570 1.15204 0.94406 0.81398 0.73516 0.90628 1.83693 1.16389 1.34991 1.71356 0.90098 0.88322 0.88179 0.76507 0.88818 0.90580 0.87758 0.88905 0.76589 0.76773 0.90209 0.87962 0.82573 0.84486 0.77056 1.17247 1.17944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.02 9.14 36.01 0.33 0.35 16 2 C 0.10 0.14 7.37 -34.96 -0.26 -0.12 16 3 C -0.25 -0.45 6.31 -103.28 -0.65 -1.11 16 4 C 0.60 1.54 7.81 -12.54 -0.10 1.45 16 5 O -0.54 -2.87 15.26 5.27 0.08 -2.79 16 6 N -0.71 0.13 5.26 -54.11 -0.28 -0.15 16 7 C 0.12 -0.12 4.32 -67.12 -0.29 -0.41 16 8 H 0.11 0.06 7.46 -51.93 -0.39 -0.33 16 9 C -0.13 0.11 7.43 -25.92 -0.19 -0.09 16 10 C -0.12 0.34 3.73 -89.81 -0.34 0.01 16 11 H 0.09 -0.17 8.14 -51.93 -0.42 -0.59 16 12 C 0.14 -0.45 6.39 -4.04 -0.03 -0.48 16 13 N -0.38 -0.02 3.69 -62.63 -0.23 -0.25 16 14 C 0.25 -0.02 12.63 -90.66 -1.14 -1.17 16 15 N -0.55 -1.62 11.19 -15.83 -0.18 -1.79 16 16 C 0.20 0.47 13.03 -91.81 -1.20 -0.73 16 17 N -0.31 -0.85 12.57 29.29 0.37 -0.48 16 18 C -0.14 0.52 7.39 -25.92 -0.19 0.33 16 19 C -0.15 -0.04 10.48 -37.45 -0.39 -0.44 16 20 C -0.05 -0.01 6.18 -35.74 -0.22 -0.23 16 21 C -0.03 0.04 2.97 36.01 0.11 0.15 16 22 O -0.52 -0.05 12.88 -35.23 -0.45 -0.50 16 23 Si 0.70 -0.91 32.09 -169.99 -5.46 -6.37 16 24 O -0.17 -0.18 8.90 7.65 0.07 -0.12 16 25 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 26 H 0.10 0.01 8.07 -51.93 -0.42 -0.40 16 27 H 0.10 -0.03 8.10 -51.93 -0.42 -0.45 16 28 H 0.40 -0.81 7.87 -40.82 -0.32 -1.13 16 29 H 0.09 -0.09 7.90 -51.93 -0.41 -0.50 16 30 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.10 -0.64 8.09 -51.93 -0.42 -1.06 16 32 H 0.09 -0.33 7.84 -51.93 -0.41 -0.73 16 33 H 0.22 -0.98 8.06 -52.49 -0.42 -1.40 16 34 H 0.22 -0.10 8.06 -52.49 -0.42 -0.53 16 35 H 0.08 -0.33 8.14 -51.93 -0.42 -0.76 16 36 H 0.10 -0.52 8.10 -51.93 -0.42 -0.94 16 37 H 0.16 -0.25 7.74 -52.49 -0.41 -0.66 16 38 H 0.14 -0.38 7.96 -51.93 -0.41 -0.80 16 39 H 0.38 -0.91 8.70 45.56 0.40 -0.51 16 40 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 41 H -0.26 -0.38 7.11 56.52 0.40 0.03 16 LS Contribution 357.77 15.07 5.39 5.39 Total: 0.00 -10.47 357.77 -10.62 -21.09 By element: Atomic # 1 Polarization: -6.19 SS G_CDS: -5.36 Total: -11.55 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -4.56 Total: -2.47 kcal Atomic # 7 Polarization: -2.36 SS G_CDS: -0.32 Total: -2.68 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: -0.31 Total: -3.41 kcal Atomic # 14 Polarization: -0.91 SS G_CDS: -5.46 Total: -6.37 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -10.47 -10.62 -21.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13308374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.736 kcal (2) G-P(sol) polarization free energy of solvation -10.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds