Wall clock time and date at job start Sun Mar 7 2021 04:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36422 * 125.79802 * 2 1 4 4 C 1.47375 * 127.19279 * 0.02562 * 3 2 1 5 5 O 1.21614 * 120.00399 * 0.14788 * 4 3 2 6 6 N 1.34781 * 119.99846 * 180.15399 * 4 3 2 7 7 C 1.46498 * 119.99839 * 179.97438 * 6 4 3 8 8 H 1.09002 * 112.85086 * 336.19550 * 7 6 4 9 9 C 1.53783 * 113.61273 * 107.49853 * 7 6 4 10 10 C 1.53780 * 87.08068 * 89.11722 * 9 7 6 11 11 H 1.09002 * 113.68937 * 270.87129 * 10 9 7 12 12 C 1.52997 * 113.61854 * 139.97645 * 10 9 7 13 13 N 1.46510 * 109.46795 * 87.50356 * 12 10 9 14 14 C 1.34427 * 126.82251 * 125.00318 * 13 12 10 15 15 N 1.30825 * 108.07573 * 179.97438 * 14 13 12 16 16 C 1.33243 * 109.83085 * 359.97438 * 15 14 13 17 17 N 1.30711 * 108.94321 * 359.75513 * 16 15 14 18 18 C 1.53778 * 113.61366 * 204.99612 * 7 6 4 19 19 C 1.47020 * 105.61327 * 180.12518 * 3 2 1 20 20 C 1.34179 * 105.95633 * 359.63346 * 19 3 2 21 21 C 1.50699 * 125.44106 * 180.26264 * 20 19 3 22 22 O 1.42907 * 109.46900 * 65.00013 * 21 20 19 23 23 Si 1.86299 * 109.47437 * 184.99940 * 21 20 19 24 24 O 1.33647 * 125.80337 * 179.71288 * 2 1 3 25 25 H 1.09004 * 109.46677 * 180.31292 * 1 2 3 26 26 H 1.08999 * 109.47232 * 300.30480 * 1 2 3 27 27 H 1.08997 * 109.47474 * 60.31492 * 1 2 3 28 28 H 0.96996 * 120.00115 * 359.97438 * 6 4 3 29 29 H 1.08998 * 113.61029 * 203.66029 * 9 7 6 30 30 H 1.08997 * 113.61533 * 334.56817 * 9 7 6 31 31 H 1.09004 * 109.47519 * 207.49793 * 12 10 9 32 32 H 1.08994 * 109.47437 * 327.50869 * 12 10 9 33 33 H 1.08001 * 125.95833 * 359.97438 * 14 13 12 34 34 H 1.08000 * 125.52875 * 180.02562 * 16 15 14 35 35 H 1.09005 * 113.61404 * 25.43556 * 18 7 6 36 36 H 1.08998 * 113.61215 * 156.25145 * 18 7 6 37 37 H 1.08002 * 127.02488 * 179.90021 * 19 3 2 38 38 H 1.08995 * 109.47038 * 305.00371 * 21 20 19 39 39 H 0.96699 * 114.00177 * 60.00425 * 22 21 20 40 40 H 1.48497 * 110.00167 * 180.02562 * 23 21 20 41 41 H 1.48507 * 109.99681 * 301.32073 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1065 0.0000 4 6 1.8739 2.5158 0.0005 5 8 0.6889 2.7892 0.0037 6 7 2.7929 3.5016 -0.0027 7 6 2.3644 4.9025 -0.0027 8 1 1.3607 5.0381 -0.4057 9 6 2.5929 5.6166 1.3399 10 6 3.9896 5.9884 0.8149 11 1 4.7538 5.2438 1.0379 12 6 4.4221 7.4106 1.1771 13 7 5.0722 7.4038 2.4900 14 6 6.2977 7.8710 2.7847 15 7 6.5080 7.6818 4.0620 16 6 5.4442 7.0995 4.6138 17 7 4.5361 6.9140 3.6921 18 6 3.4038 5.8646 -0.6016 19 6 3.6849 0.5992 -0.0031 20 6 3.5860 -0.7389 0.0036 21 6 4.7460 -1.7009 0.0092 22 8 5.4754 -1.5604 1.2300 23 14 4.1072 -3.4450 -0.1354 24 8 2.2889 -1.0839 0.0054 25 1 -0.3633 -1.0277 0.0056 26 1 -0.3633 0.5185 0.8872 27 1 -0.3634 0.5089 -0.8928 28 1 3.7381 3.2836 -0.0050 29 1 1.9410 6.4766 1.4935 30 1 2.6134 4.9416 2.1955 31 1 5.1218 7.7797 0.4272 32 1 3.5470 8.0596 1.2083 33 1 6.9882 8.3236 2.0884 34 1 5.3462 6.8289 5.6548 35 1 4.0791 5.3899 -1.3135 36 1 2.9735 6.7918 -0.9801 37 1 4.5928 1.1841 -0.0055 38 1 5.4024 -1.4833 -0.8333 39 1 4.9525 -1.7395 2.0235 40 1 5.2415 -4.4034 -0.1305 41 1 3.1858 -3.7433 0.9904 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_13308374.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:40:59 Heat of formation + Delta-G solvation = 73.144722 kcal Electronic energy + Delta-G solvation = -26177.896012 eV Core-core repulsion = 22257.463169 eV Total energy + Delta-G solvation = -3920.432843 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.81679 -42.98137 -41.22424 -39.43478 -38.18625 -35.45434 -34.42559 -33.66219 -33.07851 -32.15974 -29.61850 -28.95801 -26.73262 -26.08657 -24.89879 -23.97783 -22.86112 -22.56083 -22.25214 -20.85399 -20.22080 -19.07275 -18.30712 -18.01325 -17.74912 -17.07696 -16.90708 -16.67879 -16.23797 -16.07037 -15.91261 -15.75014 -15.38162 -15.19387 -14.87656 -14.64054 -14.28207 -14.22267 -14.01678 -13.93697 -13.86283 -13.48272 -13.13208 -12.98533 -12.88399 -12.80716 -12.22184 -12.19086 -11.74243 -11.27681 -11.26226 -10.99719 -10.97479 -10.79345 -10.76823 -10.56000 -10.15035 -9.63317 -4.96354 0.17952 0.71141 0.77687 1.14520 1.38962 1.46420 1.68188 1.89622 2.01037 2.07098 2.18411 3.13358 3.30446 3.34752 3.44672 3.53552 3.64386 3.65188 3.72516 3.79271 3.96631 4.06534 4.11876 4.21728 4.35135 4.41964 4.44253 4.56586 4.57969 4.60909 4.66331 4.72972 4.75551 4.85170 4.97155 5.02732 5.08701 5.14383 5.16575 5.32812 5.45664 5.54828 5.84190 5.95864 6.28830 6.41864 7.10248 7.13921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.086 3.914 3 C -0.270 4.270 4 C 0.590 3.410 5 O -0.573 6.573 6 N -0.696 5.696 7 C 0.110 3.890 8 H 0.090 0.910 9 C -0.138 4.138 10 C -0.111 4.111 11 H 0.086 0.914 12 C 0.131 3.869 13 N -0.378 5.378 14 C 0.256 3.744 15 N -0.586 5.586 16 C 0.182 3.818 17 N -0.344 5.344 18 C -0.114 4.114 19 C -0.147 4.147 20 C -0.057 4.057 21 C -0.034 4.034 22 O -0.535 6.535 23 Si 0.772 3.228 24 O -0.172 6.172 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.410 0.590 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.144 0.856 32 H 0.097 0.903 33 H 0.259 0.741 34 H 0.228 0.772 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.176 0.824 38 H 0.160 0.840 39 H 0.389 0.611 40 H -0.282 1.282 41 H -0.296 1.296 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.298 1.075 -6.770 7.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.033 3.967 3 C -0.275 4.275 4 C 0.379 3.621 5 O -0.454 6.454 6 N -0.346 5.346 7 C 0.004 3.996 8 H 0.108 0.892 9 C -0.176 4.176 10 C -0.130 4.130 11 H 0.104 0.896 12 C 0.010 3.990 13 N -0.168 5.168 14 C -0.040 4.040 15 N -0.314 5.314 16 C -0.120 4.120 17 N -0.173 5.173 18 C -0.152 4.152 19 C -0.166 4.166 20 C -0.105 4.105 21 C -0.143 4.143 22 O -0.343 6.343 23 Si 0.676 3.324 24 O -0.069 6.069 25 H 0.117 0.883 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.247 0.753 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.162 0.838 32 H 0.115 0.885 33 H 0.275 0.725 34 H 0.244 0.756 35 H 0.112 0.888 36 H 0.141 0.859 37 H 0.193 0.807 38 H 0.177 0.823 39 H 0.239 0.761 40 H -0.208 1.208 41 H -0.222 1.222 Dipole moment (debyes) X Y Z Total from point charges 1.369 0.118 -6.587 6.729 hybrid contribution 0.523 0.451 1.513 1.664 sum 1.892 0.569 -5.074 5.445 Atomic orbital electron populations 1.20582 0.82498 1.05126 1.05009 1.23225 0.94805 0.82985 0.95709 1.21216 0.94291 0.93458 1.18511 1.17372 0.85231 0.84423 0.75069 1.90775 1.17928 1.84594 1.52086 1.45361 1.09781 1.05113 1.74393 1.21945 0.99987 0.79939 0.97680 0.89173 1.23396 0.97240 1.00420 0.96583 1.22760 0.96655 0.96108 0.97447 0.89567 1.22269 1.00383 0.98005 0.78311 1.50782 1.13202 1.44176 1.08689 1.26908 0.87734 0.95314 0.94052 1.70538 1.29313 1.23407 1.08110 1.26415 0.87197 0.96962 1.01472 1.78018 1.23758 1.23489 0.91997 1.23285 0.96797 1.00127 0.94978 1.22777 0.96328 0.93680 1.03830 1.22845 0.82837 0.95925 1.08894 1.24550 0.91182 1.07476 0.91072 1.86640 1.40126 1.91600 1.15978 0.93545 0.78173 0.71939 0.88756 1.83694 1.16846 1.34961 1.71378 0.88268 0.89120 0.88333 0.75308 0.88826 0.93721 0.83790 0.88490 0.72490 0.75602 0.88825 0.85947 0.80710 0.82300 0.76063 1.20805 1.22236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.05 9.14 71.24 0.65 0.60 16 2 C 0.09 0.34 7.37 25.26 0.19 0.52 16 3 C -0.27 -1.20 6.31 -18.99 -0.12 -1.32 16 4 C 0.59 3.90 7.81 86.65 0.68 4.57 16 5 O -0.57 -7.42 15.26 -4.07 -0.06 -7.48 16 6 N -0.70 -0.18 5.26 -443.34 -2.33 -2.51 16 7 C 0.11 -0.16 4.32 45.52 0.20 0.04 16 8 H 0.09 0.22 7.46 -2.39 -0.02 0.21 16 9 C -0.14 0.08 7.43 31.12 0.23 0.31 16 10 C -0.11 0.72 3.73 -10.27 -0.04 0.68 16 11 H 0.09 -0.37 8.14 -2.39 -0.02 -0.39 16 12 C 0.13 -1.11 6.39 86.38 0.55 -0.56 16 13 N -0.38 0.26 3.69 -352.05 -1.30 -1.04 16 14 C 0.26 -0.37 12.63 180.36 2.28 1.91 16 15 N -0.59 -3.52 11.19 -204.01 -2.28 -5.81 16 16 C 0.18 1.07 13.03 180.76 2.36 3.42 16 17 N -0.34 -2.16 12.57 -61.25 -0.77 -2.93 16 18 C -0.11 1.07 7.39 31.12 0.23 1.30 16 19 C -0.15 -0.05 10.48 23.65 0.25 0.20 16 20 C -0.06 -0.01 6.18 24.76 0.15 0.14 16 21 C -0.03 0.10 2.97 71.24 0.21 0.31 16 22 O -0.54 0.18 12.88 -148.98 -1.92 -1.74 16 23 Si 0.77 -1.89 32.09 68.60 2.20 0.32 16 24 O -0.17 -0.44 8.90 4.45 0.04 -0.40 16 25 H 0.10 -0.36 8.14 -2.38 -0.02 -0.37 16 26 H 0.09 0.21 8.07 -2.39 -0.02 0.19 16 27 H 0.10 0.09 8.10 -2.39 -0.02 0.07 16 28 H 0.41 -1.73 7.87 -92.71 -0.73 -2.46 16 29 H 0.09 -0.08 7.90 -2.39 -0.02 -0.10 16 30 H 0.04 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.14 -2.33 8.09 -2.39 -0.02 -2.35 16 32 H 0.10 -0.85 7.84 -2.39 -0.02 -0.87 16 33 H 0.26 -3.09 8.06 -2.91 -0.02 -3.11 16 34 H 0.23 0.15 8.06 -2.91 -0.02 0.13 16 35 H 0.09 -1.05 8.14 -2.38 -0.02 -1.07 16 36 H 0.12 -1.57 8.10 -2.39 -0.02 -1.59 16 37 H 0.18 -0.76 7.74 -2.91 -0.02 -0.78 16 38 H 0.16 -1.17 7.96 -2.39 -0.02 -1.19 16 39 H 0.39 -1.84 8.70 -74.06 -0.64 -2.49 16 40 H -0.28 -0.87 7.11 99.48 0.71 -0.17 16 41 H -0.30 -1.25 7.11 99.48 0.71 -0.54 16 Total: 0.00 -27.22 357.77 1.13 -26.09 By element: Atomic # 1 Polarization: -16.38 SS G_CDS: -0.26 Total: -16.64 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 7.81 Total: 12.14 kcal Atomic # 7 Polarization: -5.60 SS G_CDS: -6.68 Total: -12.28 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -1.94 Total: -9.62 kcal Atomic # 14 Polarization: -1.89 SS G_CDS: 2.20 Total: 0.32 kcal Total: -27.22 1.13 -26.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13308374.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.232 kcal (2) G-P(sol) polarization free energy of solvation -27.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds