Wall clock time and date at job start Sun Mar 7 2021 04:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86300 * 109.46888 * 2 1 4 4 C 1.50690 * 109.47432 * 239.99527 * 2 1 3 5 5 C 1.33743 * 125.12293 * 300.02113 * 4 2 1 6 6 C 1.37796 * 115.08366 * 179.76846 * 5 4 2 7 7 C 1.34983 * 114.70122 * 0.43440 * 6 5 4 8 8 C 1.47561 * 125.27808 * 179.85807 * 7 6 5 9 9 C 1.39823 * 119.99828 * 179.71894 * 8 7 6 10 10 C 1.36564 * 119.99992 * 180.02562 * 9 8 7 11 11 C 1.39829 * 119.99584 * 359.97438 * 10 9 8 12 12 C 1.47563 * 119.99915 * 179.97438 * 11 10 9 13 13 O 1.21592 * 119.99851 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00015 * 180.02562 * 12 11 10 15 15 C 1.46507 * 119.99906 * 180.02562 * 14 12 11 16 16 H 1.08991 * 112.85046 * 23.80058 * 15 14 12 17 17 C 1.53784 * 113.61336 * 154.99573 * 15 14 12 18 18 C 1.53783 * 87.08120 * 89.19697 * 17 15 14 19 19 H 1.08999 * 113.61674 * 270.80231 * 18 17 15 20 20 C 1.53002 * 113.61378 * 139.97763 * 18 17 15 21 21 N 1.46497 * 109.47053 * 176.52892 * 20 18 17 22 22 C 1.34433 * 126.81976 * 124.99682 * 21 20 18 23 23 N 1.30830 * 108.07650 * 179.73774 * 22 21 20 24 24 C 1.33244 * 109.82956 * 0.27201 * 23 22 21 25 25 N 1.30709 * 108.94525 * 359.97438 * 24 23 22 26 26 C 1.53784 * 87.17068 * 25.38854 * 18 17 15 27 27 C 1.39837 * 120.00290 * 0.25653 * 11 10 9 28 28 C 1.36559 * 119.99390 * 359.51198 * 27 11 10 29 29 S 1.75866 * 125.11717 * 120.02593 * 4 2 1 30 30 H 0.96697 * 113.99431 * 60.00778 * 1 2 3 31 31 H 1.08999 * 109.46969 * 119.99098 * 2 1 3 32 32 H 1.48505 * 109.99833 * 298.67889 * 3 2 1 33 33 H 1.48504 * 110.00392 * 59.99290 * 3 2 1 34 34 H 1.07998 * 122.45423 * 359.97438 * 5 4 2 35 35 H 1.08003 * 122.65119 * 180.27586 * 6 5 4 36 36 H 1.07998 * 120.00073 * 359.97433 * 9 8 7 37 37 H 1.07997 * 120.00363 * 180.02562 * 10 9 8 38 38 H 0.97003 * 120.00410 * 359.97438 * 14 12 11 39 39 H 1.08998 * 113.61368 * 334.65309 * 17 15 14 40 40 H 1.08992 * 113.61078 * 203.74352 * 17 15 14 41 41 H 1.08999 * 109.46900 * 56.53403 * 20 18 17 42 42 H 1.09001 * 109.47176 * 296.53422 * 20 18 17 43 43 H 1.08002 * 125.96533 * 0.02562 * 22 21 20 44 44 H 1.08000 * 125.52768 * 179.97438 * 24 23 22 45 45 H 1.09002 * 113.61639 * 89.16305 * 26 18 17 46 46 H 1.09007 * 113.61419 * 220.05745 * 26 18 17 47 47 H 1.08001 * 120.00130 * 179.74220 * 27 11 10 48 48 H 1.07997 * 119.99757 * 180.22999 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2303 5 6 1.6720 -1.9847 -1.5429 6 6 2.2335 -2.4228 -2.7225 7 6 2.9676 -1.4973 -3.3757 8 6 3.6725 -1.7154 -4.6536 9 6 4.3990 -0.6733 -5.2379 10 6 5.0510 -0.8749 -6.4208 11 6 4.9923 -2.1236 -7.0473 12 6 5.6963 -2.3414 -8.3258 13 8 6.3277 -1.4351 -8.8341 14 7 5.6394 -3.5448 -8.9300 15 6 6.3388 -3.7611 -10.1990 16 1 7.1699 -3.0718 -10.3471 17 6 6.7050 -5.2321 -10.4576 18 6 5.3303 -5.3740 -11.1321 19 1 4.5332 -5.6555 -10.4439 20 6 5.3542 -6.2338 -12.3974 21 7 3.9918 -6.3764 -12.9167 22 6 3.5668 -6.0772 -14.1565 23 7 2.2892 -6.3505 -14.2246 24 6 1.8639 -6.8184 -13.0518 25 7 2.8696 -6.8499 -12.2175 26 6 5.3969 -3.8634 -11.4125 27 6 4.2617 -3.1643 -6.4654 28 6 3.6138 -2.9640 -5.2802 29 16 2.9473 0.0112 -2.4713 30 1 -0.3932 0.4416 -0.7651 31 1 1.7923 -0.5137 0.8901 32 1 1.5878 2.4585 -1.2243 33 1 1.5613 2.4680 1.2084 34 1 1.0640 -2.6224 -0.9183 35 1 2.0991 -3.4281 -3.0938 36 1 4.4439 0.2912 -4.7541 37 1 5.6125 -0.0702 -6.8719 38 1 5.1360 -4.2679 -8.5243 39 1 6.8077 -5.8230 -9.5474 40 1 7.5428 -5.3595 -11.1430 41 1 5.7573 -7.2183 -12.1600 42 1 5.9817 -5.7559 -13.1496 43 1 4.1749 -5.6844 -14.9580 44 1 0.8522 -7.1223 -12.8269 45 1 5.8765 -3.6158 -12.3595 46 1 4.4452 -3.3508 -11.2722 47 1 4.2130 -4.1275 -6.9515 48 1 3.0526 -3.7688 -4.8288 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688106_13308390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:41:04 Heat of formation + Delta-G solvation = 119.509339 kcal Electronic energy + Delta-G solvation = -32093.540663 eV Core-core repulsion = 27630.746838 eV Total energy + Delta-G solvation = -4462.793825 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.125 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.00730 -41.66802 -40.55144 -39.52951 -38.91306 -37.50629 -35.53891 -34.24544 -33.30498 -32.27744 -32.13652 -30.57314 -29.20765 -27.30250 -26.97791 -25.19095 -24.43762 -23.99146 -23.44975 -22.96983 -22.46457 -21.89458 -20.38367 -20.34000 -19.31492 -18.75335 -18.32226 -17.74269 -17.32853 -16.91386 -16.72528 -16.39853 -16.29569 -16.23341 -16.11956 -16.01732 -15.67121 -15.50611 -15.17944 -15.04887 -14.98639 -14.57719 -14.50855 -14.29391 -14.00851 -13.83225 -13.72959 -13.67054 -13.45345 -13.30112 -13.14618 -12.90233 -12.58641 -12.37100 -12.33596 -12.16991 -11.88475 -11.62944 -11.56492 -11.04134 -10.92817 -10.90145 -10.73745 -10.68056 -10.58586 -10.26311 -10.18459 -9.60212 -9.08344 -5.13858 -0.93745 0.20612 0.27413 0.33670 0.67063 0.70477 1.14829 1.29417 1.50085 1.52414 1.83800 1.93575 1.95123 2.04856 2.78399 3.15081 3.20337 3.23245 3.26932 3.35672 3.39747 3.55592 3.56561 3.63481 3.66561 3.73619 3.77172 3.92696 4.00455 4.10289 4.21965 4.22305 4.31091 4.34994 4.42503 4.44431 4.45863 4.46700 4.53689 4.64209 4.78040 4.81457 4.82759 4.92916 4.95408 5.03862 5.16354 5.21736 5.24189 5.27357 5.40407 5.41453 5.47570 5.66139 5.80927 6.23748 6.34427 7.10305 7.13581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.523 6.523 2 C -0.033 4.033 3 Si 0.648 3.352 4 C -0.217 4.217 5 C -0.104 4.104 6 C -0.119 4.119 7 C -0.149 4.149 8 C 0.015 3.985 9 C -0.120 4.120 10 C -0.048 4.048 11 C -0.138 4.138 12 C 0.563 3.437 13 O -0.531 6.531 14 N -0.710 5.710 15 C 0.123 3.877 16 H 0.109 0.891 17 C -0.136 4.136 18 C -0.125 4.125 19 H 0.104 0.896 20 C 0.138 3.862 21 N -0.377 5.377 22 C 0.253 3.747 23 N -0.547 5.547 24 C 0.198 3.802 25 N -0.319 5.319 26 C -0.147 4.147 27 C -0.077 4.077 28 C -0.110 4.110 29 S 0.134 5.866 30 H 0.378 0.622 31 H 0.128 0.872 32 H -0.240 1.240 33 H -0.234 1.234 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.401 0.599 39 H 0.081 0.919 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.218 0.782 44 H 0.216 0.784 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.129 0.871 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.523 -2.466 0.592 4.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.330 6.330 2 C -0.145 4.145 3 Si 0.547 3.453 4 C -0.334 4.334 5 C -0.134 4.134 6 C -0.149 4.149 7 C -0.266 4.266 8 C 0.012 3.988 9 C -0.139 4.139 10 C -0.067 4.067 11 C -0.141 4.141 12 C 0.352 3.648 13 O -0.408 6.408 14 N -0.362 5.362 15 C 0.017 3.983 16 H 0.127 0.873 17 C -0.175 4.175 18 C -0.144 4.144 19 H 0.123 0.877 20 C 0.016 3.984 21 N -0.168 5.168 22 C -0.043 4.043 23 N -0.274 5.274 24 C -0.104 4.104 25 N -0.147 5.147 26 C -0.186 4.186 27 C -0.096 4.096 28 C -0.130 4.130 29 S 0.402 5.598 30 H 0.226 0.774 31 H 0.146 0.854 32 H -0.164 1.164 33 H -0.157 1.157 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.160 0.840 38 H 0.237 0.763 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.110 0.890 42 H 0.123 0.877 43 H 0.234 0.766 44 H 0.233 0.767 45 H 0.113 0.887 46 H 0.091 0.909 47 H 0.147 0.853 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.309 0.000 1.079 4.442 hybrid contribution -1.799 -2.013 -0.269 2.713 sum 2.509 -2.013 0.810 3.317 Atomic orbital electron populations 1.86630 1.17165 1.79918 1.49273 1.24376 0.83845 1.10055 0.96251 0.95232 0.91844 0.75169 0.83057 1.25043 1.07070 0.99036 1.02268 1.20004 1.01215 0.94865 0.97358 1.20395 0.98604 1.00569 0.95336 1.23088 1.05964 0.98065 0.99481 1.18301 0.95160 0.94066 0.91225 1.20981 0.98001 0.98754 0.96159 1.20944 0.95967 0.96206 0.93551 1.19976 1.02237 0.95670 0.96230 1.18212 0.80184 0.82272 0.84181 1.90811 1.42116 1.42091 1.65756 1.45574 1.53581 1.13602 1.23450 1.21811 0.95752 0.97615 0.83109 0.87275 1.23349 0.96778 0.95744 1.01622 1.22984 0.99261 0.95359 0.96772 0.87734 1.21919 0.77593 1.01954 0.96934 1.50557 1.09215 1.47399 1.09598 1.26111 0.92322 0.96992 0.88915 1.70567 1.09695 1.21664 1.25471 1.26044 0.99807 0.97747 0.86840 1.78003 0.93429 1.22445 1.20827 1.23568 1.00999 0.95100 0.98936 1.20954 0.95359 0.98116 0.95189 1.20872 1.00263 0.96408 0.95410 1.84170 1.48609 1.12426 1.14625 0.77392 0.85418 1.16388 1.15690 0.83637 0.83756 0.85088 0.84024 0.76300 0.90053 0.87933 0.88956 0.87727 0.76595 0.76726 0.88714 0.90869 0.85303 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.32 12.86 -35.23 -0.45 -0.78 16 2 C -0.03 0.02 2.96 36.00 0.11 0.13 16 3 Si 0.65 -0.64 30.96 -169.99 -5.26 -5.90 16 4 C -0.22 0.05 5.73 -35.89 -0.21 -0.16 16 5 C -0.10 0.02 10.00 -41.32 -0.41 -0.40 16 6 C -0.12 0.05 9.64 -40.90 -0.39 -0.35 16 7 C -0.15 -0.04 6.37 -36.94 -0.24 -0.28 16 8 C 0.01 0.00 5.88 -104.91 -0.62 -0.61 16 9 C -0.12 -0.05 9.54 -39.59 -0.38 -0.42 16 10 C -0.05 -0.05 9.53 -39.59 -0.38 -0.43 16 11 C -0.14 -0.11 5.88 -104.90 -0.62 -0.73 16 12 C 0.56 1.10 7.76 -12.46 -0.10 1.00 16 13 O -0.53 -2.96 15.93 5.28 0.08 -2.87 16 14 N -0.71 0.75 5.21 -53.96 -0.28 0.47 16 15 C 0.12 -0.21 4.33 -67.02 -0.29 -0.50 16 16 H 0.11 -0.02 7.46 -51.93 -0.39 -0.41 16 17 C -0.14 0.58 7.39 -25.92 -0.19 0.39 16 18 C -0.12 0.41 3.74 -89.80 -0.34 0.08 16 19 H 0.10 -0.18 8.03 -51.93 -0.42 -0.60 16 20 C 0.14 -0.51 6.37 -4.04 -0.03 -0.53 16 21 N -0.38 0.12 3.69 -62.63 -0.23 -0.11 16 22 C 0.25 -0.06 12.63 -90.65 -1.14 -1.21 16 23 N -0.55 -1.48 11.19 -15.83 -0.18 -1.66 16 24 C 0.20 0.39 13.03 -91.81 -1.20 -0.81 16 25 N -0.32 -0.69 12.47 29.29 0.37 -0.32 16 26 C -0.15 0.32 7.44 -25.83 -0.19 0.13 16 27 C -0.08 0.10 9.48 -39.59 -0.38 -0.28 16 28 C -0.11 0.11 9.48 -39.59 -0.38 -0.27 16 29 S 0.13 -0.03 19.46 -107.50 -2.09 -2.13 16 30 H 0.38 -0.78 8.70 45.56 0.40 -0.39 16 31 H 0.13 -0.21 7.96 -51.93 -0.41 -0.62 16 32 H -0.24 -0.21 7.11 56.52 0.40 0.19 16 33 H -0.23 -0.39 7.11 56.52 0.40 0.01 16 34 H 0.15 -0.14 8.06 -52.49 -0.42 -0.56 16 35 H 0.14 -0.33 6.88 -52.48 -0.36 -0.69 16 36 H 0.13 -0.11 7.26 -52.49 -0.38 -0.49 16 37 H 0.14 0.16 7.64 -52.49 -0.40 -0.25 16 38 H 0.40 -1.29 6.71 -40.82 -0.27 -1.57 16 39 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 40 H 0.10 -0.57 8.10 -51.93 -0.42 -0.99 16 41 H 0.09 -0.37 8.14 -51.93 -0.42 -0.80 16 42 H 0.10 -0.65 7.82 -51.93 -0.41 -1.06 16 43 H 0.22 -0.98 8.06 -52.49 -0.42 -1.40 16 44 H 0.22 -0.23 8.06 -52.49 -0.42 -0.65 16 45 H 0.09 -0.32 7.92 -51.93 -0.41 -0.73 16 46 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 47 H 0.13 -0.51 6.38 -52.49 -0.34 -0.84 16 48 H 0.13 -0.40 6.74 -52.49 -0.35 -0.75 16 LS Contribution 419.37 15.07 6.32 6.32 Total: 0.00 -11.03 419.37 -14.98 -26.01 By element: Atomic # 1 Polarization: -7.88 SS G_CDS: -5.90 Total: -13.78 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -7.35 Total: -5.25 kcal Atomic # 7 Polarization: -1.30 SS G_CDS: -0.32 Total: -1.63 kcal Atomic # 8 Polarization: -3.28 SS G_CDS: -0.37 Total: -3.65 kcal Atomic # 14 Polarization: -0.64 SS G_CDS: -5.26 Total: -5.90 kcal Atomic # 16 Polarization: -0.03 SS G_CDS: -2.09 Total: -2.13 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -11.03 -14.98 -26.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13308390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.524 kcal (2) G-P(sol) polarization free energy of solvation -11.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds