Wall clock time and date at job start Sun Mar 7 2021 04:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86300 * 109.46888 * 2 1 4 4 C 1.50690 * 109.47432 * 239.99527 * 2 1 3 5 5 C 1.33743 * 125.12293 * 300.02113 * 4 2 1 6 6 C 1.37796 * 115.08366 * 179.76846 * 5 4 2 7 7 C 1.34983 * 114.70122 * 0.43440 * 6 5 4 8 8 C 1.47561 * 125.27808 * 179.85807 * 7 6 5 9 9 C 1.39823 * 119.99828 * 179.71894 * 8 7 6 10 10 C 1.36564 * 119.99992 * 180.02562 * 9 8 7 11 11 C 1.39829 * 119.99584 * 359.97438 * 10 9 8 12 12 C 1.47563 * 119.99915 * 179.97438 * 11 10 9 13 13 O 1.21592 * 119.99851 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00015 * 180.02562 * 12 11 10 15 15 C 1.46507 * 119.99906 * 180.02562 * 14 12 11 16 16 H 1.08991 * 112.85046 * 23.80058 * 15 14 12 17 17 C 1.53784 * 113.61336 * 154.99573 * 15 14 12 18 18 C 1.53783 * 87.08120 * 89.19697 * 17 15 14 19 19 H 1.08999 * 113.61674 * 270.80231 * 18 17 15 20 20 C 1.53002 * 113.61378 * 139.97763 * 18 17 15 21 21 N 1.46497 * 109.47053 * 176.52892 * 20 18 17 22 22 C 1.34433 * 126.81976 * 124.99682 * 21 20 18 23 23 N 1.30830 * 108.07650 * 179.73774 * 22 21 20 24 24 C 1.33244 * 109.82956 * 0.27201 * 23 22 21 25 25 N 1.30709 * 108.94525 * 359.97438 * 24 23 22 26 26 C 1.53784 * 87.17068 * 25.38854 * 18 17 15 27 27 C 1.39837 * 120.00290 * 0.25653 * 11 10 9 28 28 C 1.36559 * 119.99390 * 359.51198 * 27 11 10 29 29 S 1.75866 * 125.11717 * 120.02593 * 4 2 1 30 30 H 0.96697 * 113.99431 * 60.00778 * 1 2 3 31 31 H 1.08999 * 109.46969 * 119.99098 * 2 1 3 32 32 H 1.48505 * 109.99833 * 298.67889 * 3 2 1 33 33 H 1.48504 * 110.00392 * 59.99290 * 3 2 1 34 34 H 1.07998 * 122.45423 * 359.97438 * 5 4 2 35 35 H 1.08003 * 122.65119 * 180.27586 * 6 5 4 36 36 H 1.07998 * 120.00073 * 359.97433 * 9 8 7 37 37 H 1.07997 * 120.00363 * 180.02562 * 10 9 8 38 38 H 0.97003 * 120.00410 * 359.97438 * 14 12 11 39 39 H 1.08998 * 113.61368 * 334.65309 * 17 15 14 40 40 H 1.08992 * 113.61078 * 203.74352 * 17 15 14 41 41 H 1.08999 * 109.46900 * 56.53403 * 20 18 17 42 42 H 1.09001 * 109.47176 * 296.53422 * 20 18 17 43 43 H 1.08002 * 125.96533 * 0.02562 * 22 21 20 44 44 H 1.08000 * 125.52768 * 179.97438 * 24 23 22 45 45 H 1.09002 * 113.61639 * 89.16305 * 26 18 17 46 46 H 1.09007 * 113.61419 * 220.05745 * 26 18 17 47 47 H 1.08001 * 120.00130 * 179.74220 * 27 11 10 48 48 H 1.07997 * 119.99757 * 180.22999 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2303 5 6 1.6720 -1.9847 -1.5429 6 6 2.2335 -2.4228 -2.7225 7 6 2.9676 -1.4973 -3.3757 8 6 3.6725 -1.7154 -4.6536 9 6 4.3990 -0.6733 -5.2379 10 6 5.0510 -0.8749 -6.4208 11 6 4.9923 -2.1236 -7.0473 12 6 5.6963 -2.3414 -8.3258 13 8 6.3277 -1.4351 -8.8341 14 7 5.6394 -3.5448 -8.9300 15 6 6.3388 -3.7611 -10.1990 16 1 7.1699 -3.0718 -10.3471 17 6 6.7050 -5.2321 -10.4576 18 6 5.3303 -5.3740 -11.1321 19 1 4.5332 -5.6555 -10.4439 20 6 5.3542 -6.2338 -12.3974 21 7 3.9918 -6.3764 -12.9167 22 6 3.5668 -6.0772 -14.1565 23 7 2.2892 -6.3505 -14.2246 24 6 1.8639 -6.8184 -13.0518 25 7 2.8696 -6.8499 -12.2175 26 6 5.3969 -3.8634 -11.4125 27 6 4.2617 -3.1643 -6.4654 28 6 3.6138 -2.9640 -5.2802 29 16 2.9473 0.0112 -2.4713 30 1 -0.3932 0.4416 -0.7651 31 1 1.7923 -0.5137 0.8901 32 1 1.5878 2.4585 -1.2243 33 1 1.5613 2.4680 1.2084 34 1 1.0640 -2.6224 -0.9183 35 1 2.0991 -3.4281 -3.0938 36 1 4.4439 0.2912 -4.7541 37 1 5.6125 -0.0702 -6.8719 38 1 5.1360 -4.2679 -8.5243 39 1 6.8077 -5.8230 -9.5474 40 1 7.5428 -5.3595 -11.1430 41 1 5.7573 -7.2183 -12.1600 42 1 5.9817 -5.7559 -13.1496 43 1 4.1749 -5.6844 -14.9580 44 1 0.8522 -7.1223 -12.8269 45 1 5.8765 -3.6158 -12.3595 46 1 4.4452 -3.3508 -11.2722 47 1 4.2130 -4.1275 -6.9515 48 1 3.0526 -3.7688 -4.8288 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_13308390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:41:03 Heat of formation + Delta-G solvation = 122.889008 kcal Electronic energy + Delta-G solvation = -32093.394109 eV Core-core repulsion = 27630.746838 eV Total energy + Delta-G solvation = -4462.647271 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 397.125 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.97195 -41.66386 -40.45297 -39.50367 -38.93061 -37.49206 -35.50004 -34.23728 -33.27287 -32.24159 -32.13981 -30.54173 -29.06961 -27.26984 -26.74143 -25.13258 -24.35889 -23.95537 -23.41229 -22.91358 -22.39004 -21.89721 -20.30773 -20.24724 -19.27235 -18.73019 -18.21448 -17.72160 -17.28842 -16.83764 -16.66840 -16.35775 -16.24897 -16.18850 -16.14860 -15.97372 -15.61920 -15.43969 -15.12782 -14.96688 -14.95802 -14.50102 -14.47595 -14.31547 -13.82661 -13.80925 -13.64641 -13.50866 -13.34982 -13.26515 -13.11861 -12.76289 -12.56863 -12.43486 -12.15077 -12.11428 -11.75123 -11.54282 -11.42842 -11.19370 -10.95491 -10.89736 -10.77162 -10.67586 -10.49592 -10.22912 -10.15891 -9.56653 -9.05821 -5.09741 -0.92318 0.22088 0.30059 0.37313 0.71460 0.74731 1.19004 1.46521 1.51303 1.52877 1.83490 1.91810 1.98282 2.02486 2.78572 3.29065 3.37232 3.39345 3.47374 3.48458 3.55318 3.62433 3.66093 3.71301 3.80061 3.81062 3.94733 4.16032 4.17210 4.20871 4.28067 4.39222 4.48736 4.50929 4.52155 4.54909 4.59908 4.66835 4.75040 4.81372 4.88417 4.95492 4.99351 5.02481 5.07850 5.14680 5.19315 5.26123 5.29021 5.32764 5.45976 5.47405 5.52530 5.69674 5.95937 6.35852 6.37425 7.05642 7.14814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.034 4.034 3 Si 0.710 3.290 4 C -0.218 4.218 5 C -0.111 4.111 6 C -0.116 4.116 7 C -0.161 4.161 8 C 0.008 3.992 9 C -0.128 4.128 10 C -0.063 4.063 11 C -0.152 4.152 12 C 0.559 3.441 13 O -0.578 6.578 14 N -0.697 5.697 15 C 0.109 3.891 16 H 0.091 0.909 17 C -0.117 4.117 18 C -0.115 4.115 19 H 0.088 0.912 20 C 0.131 3.869 21 N -0.375 5.375 22 C 0.254 3.746 23 N -0.586 5.586 24 C 0.185 3.815 25 N -0.346 5.346 26 C -0.145 4.145 27 C -0.069 4.069 28 C -0.110 4.110 29 S 0.125 5.875 30 H 0.388 0.612 31 H 0.140 0.860 32 H -0.267 1.267 33 H -0.271 1.271 34 H 0.154 0.846 35 H 0.165 0.835 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.412 0.588 39 H 0.088 0.912 40 H 0.125 0.875 41 H 0.102 0.898 42 H 0.138 0.862 43 H 0.255 0.745 44 H 0.231 0.769 45 H 0.110 0.890 46 H 0.045 0.955 47 H 0.158 0.842 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.058 -4.500 0.363 6.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.146 4.146 3 Si 0.612 3.388 4 C -0.335 4.335 5 C -0.141 4.141 6 C -0.146 4.146 7 C -0.278 4.278 8 C 0.006 3.994 9 C -0.147 4.147 10 C -0.081 4.081 11 C -0.156 4.156 12 C 0.349 3.651 13 O -0.459 6.459 14 N -0.349 5.349 15 C 0.003 3.997 16 H 0.109 0.891 17 C -0.155 4.155 18 C -0.134 4.134 19 H 0.106 0.894 20 C 0.011 3.989 21 N -0.166 5.166 22 C -0.042 4.042 23 N -0.315 5.315 24 C -0.118 4.118 25 N -0.174 5.174 26 C -0.183 4.183 27 C -0.087 4.087 28 C -0.129 4.129 29 S 0.392 5.608 30 H 0.237 0.763 31 H 0.158 0.842 32 H -0.192 1.192 33 H -0.197 1.197 34 H 0.172 0.828 35 H 0.183 0.817 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.251 0.749 39 H 0.106 0.894 40 H 0.143 0.857 41 H 0.120 0.880 42 H 0.156 0.844 43 H 0.271 0.729 44 H 0.247 0.753 45 H 0.128 0.872 46 H 0.064 0.936 47 H 0.175 0.825 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.855 -2.079 0.849 5.349 hybrid contribution -1.980 -1.344 -0.187 2.401 sum 2.874 -3.423 0.661 4.518 Atomic orbital electron populations 1.86601 1.17816 1.80204 1.50112 1.24467 0.83359 1.10117 0.96668 0.94473 0.90999 0.73837 0.79485 1.25108 1.07009 0.99193 1.02217 1.20183 1.01323 0.94940 0.97636 1.20637 0.97732 1.01315 0.94959 1.23171 1.06653 0.98282 0.99714 1.18461 0.95025 0.94539 0.91372 1.21048 0.98246 0.99347 0.96028 1.20954 0.96595 0.96454 0.94142 1.20024 1.03151 0.96290 0.96118 1.18461 0.79710 0.82490 0.84486 1.90778 1.44367 1.43656 1.67065 1.45518 1.52924 1.12955 1.23455 1.21974 0.95511 0.99244 0.82934 0.89051 1.23304 0.96798 0.93201 1.02185 1.22822 0.99352 0.94339 0.96875 0.89366 1.22264 0.76408 1.02700 0.97551 1.50742 1.09642 1.46653 1.09534 1.26838 0.91942 0.95763 0.89639 1.70542 1.11487 1.23173 1.26256 1.26431 1.00659 0.97861 0.86843 1.77915 0.94307 1.23381 1.21836 1.23576 0.99548 0.95842 0.99381 1.21220 0.94003 0.98558 0.94960 1.21182 0.99995 0.96514 0.95232 1.84199 1.48839 1.12808 1.14922 0.76287 0.84233 1.19237 1.19673 0.82797 0.81743 0.84645 0.85138 0.74941 0.89373 0.85722 0.88033 0.84438 0.72883 0.75325 0.87182 0.93561 0.82496 0.82317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.60 12.86 -148.98 -1.92 -2.52 16 2 C -0.03 0.05 2.96 71.23 0.21 0.26 16 3 Si 0.71 -0.90 30.96 68.60 2.12 1.22 16 4 C -0.22 0.16 5.73 24.66 0.14 0.30 16 5 C -0.11 0.14 10.00 21.14 0.21 0.35 16 6 C -0.12 0.23 9.64 21.42 0.21 0.43 16 7 C -0.16 -0.04 6.37 23.98 0.15 0.11 16 8 C 0.01 0.00 5.88 -20.05 -0.12 -0.11 16 9 C -0.13 -0.27 9.54 22.26 0.21 -0.05 16 10 C -0.06 -0.26 9.53 22.26 0.21 -0.05 16 11 C -0.15 -0.42 5.88 -20.05 -0.12 -0.53 16 12 C 0.56 3.05 7.76 86.70 0.67 3.72 16 13 O -0.58 -7.97 15.93 -4.01 -0.06 -8.03 16 14 N -0.70 1.15 5.21 -442.89 -2.31 -1.16 16 15 C 0.11 -0.36 4.33 45.57 0.20 -0.17 16 16 H 0.09 0.06 7.46 -2.39 -0.02 0.04 16 17 C -0.12 1.18 7.39 31.12 0.23 1.41 16 18 C -0.11 0.88 3.74 -10.27 -0.04 0.85 16 19 H 0.09 -0.34 8.03 -2.39 -0.02 -0.36 16 20 C 0.13 -1.22 6.37 86.38 0.55 -0.67 16 21 N -0.38 0.59 3.69 -352.06 -1.30 -0.71 16 22 C 0.25 -0.37 12.63 180.36 2.28 1.91 16 23 N -0.59 -3.26 11.19 -204.00 -2.28 -5.54 16 24 C 0.18 0.83 13.03 180.77 2.36 3.19 16 25 N -0.35 -1.54 12.47 -61.25 -0.76 -2.31 16 26 C -0.14 0.66 7.44 31.18 0.23 0.89 16 27 C -0.07 0.21 9.48 22.26 0.21 0.42 16 28 C -0.11 0.33 9.48 22.26 0.21 0.54 16 29 S 0.12 -0.02 19.46 -56.49 -1.10 -1.12 16 30 H 0.39 -1.54 8.70 -74.06 -0.64 -2.18 16 31 H 0.14 -0.55 7.96 -2.39 -0.02 -0.57 16 32 H -0.27 -0.79 7.11 99.48 0.71 -0.08 16 33 H -0.27 -1.31 7.11 99.48 0.71 -0.60 16 34 H 0.15 -0.48 8.06 -2.91 -0.02 -0.51 16 35 H 0.17 -1.10 6.88 -2.91 -0.02 -1.12 16 36 H 0.14 0.01 7.26 -2.91 -0.02 -0.01 16 37 H 0.13 0.72 7.64 -2.91 -0.02 0.70 16 38 H 0.41 -2.83 6.71 -92.71 -0.62 -3.45 16 39 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 40 H 0.12 -1.75 8.10 -2.39 -0.02 -1.77 16 41 H 0.10 -1.07 8.14 -2.39 -0.02 -1.09 16 42 H 0.14 -2.18 7.82 -2.39 -0.02 -2.20 16 43 H 0.26 -2.87 8.06 -2.91 -0.02 -2.89 16 44 H 0.23 -0.26 8.06 -2.91 -0.02 -0.28 16 45 H 0.11 -0.85 7.92 -2.39 -0.02 -0.87 16 46 H 0.05 0.06 8.14 -2.38 -0.02 0.04 16 47 H 0.16 -1.50 6.38 -2.91 -0.02 -1.52 16 48 H 0.16 -1.32 6.74 -2.91 -0.02 -1.34 16 Total: 0.00 -28.60 419.37 0.21 -28.39 By element: Atomic # 1 Polarization: -20.81 SS G_CDS: -0.20 Total: -21.01 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 8.01 Total: 12.79 kcal Atomic # 7 Polarization: -3.07 SS G_CDS: -6.66 Total: -9.73 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -1.98 Total: -10.55 kcal Atomic # 14 Polarization: -0.90 SS G_CDS: 2.12 Total: 1.22 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -1.10 Total: -1.12 kcal Total: -28.60 0.21 -28.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13308390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.281 kcal (2) G-P(sol) polarization free energy of solvation -28.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds