Wall clock time and date at job start Sun Mar 7 2021 04:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47725 * 2 1 4 4 C 1.50705 * 109.47171 * 240.00020 * 2 1 3 5 5 C 1.38498 * 119.80741 * 119.72526 * 4 2 1 6 6 C 1.37836 * 120.30338 * 179.76829 * 5 4 2 7 7 C 1.39670 * 119.90248 * 0.51055 * 6 5 4 8 8 C 1.47533 * 120.18828 * 179.77054 * 7 6 5 9 9 O 1.21594 * 119.99734 * 179.97438 * 8 7 6 10 10 N 1.34770 * 120.00468 * 359.97400 * 8 7 6 11 11 C 1.46501 * 120.00578 * 180.02562 * 10 8 7 12 12 H 1.09003 * 112.84636 * 23.80580 * 11 10 8 13 13 C 1.53779 * 113.61610 * 154.99585 * 11 10 8 14 14 C 1.53783 * 87.07711 * 89.11865 * 13 11 10 15 15 H 1.09006 * 113.61692 * 270.88222 * 14 13 11 16 16 C 1.53007 * 113.61547 * 140.06390 * 14 13 11 17 17 N 1.46493 * 109.47208 * 174.99819 * 16 14 13 18 18 C 1.34434 * 126.82268 * 124.70930 * 17 16 14 19 19 N 1.30834 * 108.07759 * 179.89172 * 18 17 16 20 20 C 1.33239 * 109.83012 * 0.38527 * 19 18 17 21 21 N 1.30721 * 108.94547 * 359.76093 * 20 19 18 22 22 C 1.53776 * 113.61719 * 252.49874 * 11 10 8 23 23 C 1.40180 * 119.61870 * 359.74209 * 7 6 5 24 24 O 1.35655 * 120.14928 * 180.02562 * 23 7 6 25 25 C 1.38100 * 119.80238 * 300.00142 * 4 2 1 26 26 H 0.96709 * 113.99337 * 300.00145 * 1 2 3 27 27 H 1.09004 * 109.47533 * 120.00158 * 2 1 3 28 28 H 1.48506 * 109.99834 * 300.00610 * 3 2 1 29 29 H 1.48502 * 110.00011 * 61.31874 * 3 2 1 30 30 H 1.07998 * 119.84963 * 0.02562 * 5 4 2 31 31 H 1.07996 * 120.04745 * 180.23130 * 6 5 4 32 32 H 0.97002 * 119.99536 * 359.97438 * 10 8 7 33 33 H 1.08997 * 113.61557 * 203.66418 * 13 11 10 34 34 H 1.08998 * 113.61953 * 334.57448 * 13 11 10 35 35 H 1.09001 * 109.46957 * 295.00054 * 16 14 13 36 36 H 1.09005 * 109.46373 * 54.99841 * 16 14 13 37 37 H 1.08004 * 125.95807 * 0.03930 * 18 17 16 38 38 H 1.07992 * 125.52827 * 179.72529 * 20 19 18 39 39 H 1.09005 * 113.60982 * 25.42641 * 22 11 10 40 40 H 1.08993 * 113.61543 * 156.32948 * 22 11 10 41 41 H 0.96692 * 114.00093 * 269.98156 * 24 23 7 42 42 H 1.07998 * 119.95761 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7226 -0.0318 -2.1424 6 6 3.1916 -0.6730 -3.2689 7 6 2.8592 -2.0100 -3.4982 8 6 3.3535 -2.7009 -4.7044 9 8 3.0624 -3.8651 -4.9004 10 7 4.1277 -2.0418 -5.5890 11 6 4.6181 -2.7277 -6.7871 12 1 3.9966 -3.5763 -7.0731 13 6 4.9381 -1.7778 -7.9532 14 6 6.3571 -1.6676 -7.3706 15 1 6.4677 -0.8673 -6.6388 16 6 7.4571 -1.6564 -8.4340 17 7 8.7543 -1.4295 -7.7923 18 6 9.8473 -2.2064 -7.8876 19 7 10.7968 -1.6610 -7.1717 20 6 10.3474 -0.5444 -6.6003 21 7 9.1015 -0.3603 -6.9504 22 6 6.1209 -3.0503 -6.7405 23 6 2.0537 -2.6918 -2.5755 24 8 1.7247 -3.9907 -2.7873 25 6 1.5952 -2.0326 -1.4450 26 1 -0.3932 0.4418 0.7651 27 1 1.7924 -0.5139 0.8900 28 1 1.5615 2.4679 -1.2085 29 1 1.5881 2.4585 1.2242 30 1 2.9768 1.0032 -1.9680 31 1 3.8114 -0.1410 -3.9753 32 1 4.3596 -1.1130 -5.4328 33 1 4.9036 -2.2591 -8.9306 34 1 4.3790 -0.8427 -7.9208 35 1 7.4710 -2.6150 -8.9526 36 1 7.2616 -0.8585 -9.1505 37 1 9.9281 -3.1201 -8.4578 38 1 10.9194 0.1032 -5.9525 39 1 6.5166 -3.1425 -5.7290 40 1 6.4097 -3.8795 -7.3863 41 1 0.9078 -4.1126 -3.2900 42 1 0.9737 -2.5536 -0.7318 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688106_13422076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:41:09 Heat of formation + Delta-G solvation = 50.376676 kcal Electronic energy + Delta-G solvation = -27405.303227 eV Core-core repulsion = 23355.656947 eV Total energy + Delta-G solvation = -4049.646280 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.98687 -41.77286 -40.75195 -39.23026 -38.32561 -37.31260 -35.44398 -34.12082 -32.62151 -32.11647 -31.11695 -29.26625 -27.53782 -26.94726 -24.82457 -23.89425 -23.46029 -22.94334 -22.42698 -21.75355 -20.33775 -19.34678 -18.73805 -18.66044 -18.31004 -17.60704 -17.04705 -16.76195 -16.57234 -16.27361 -16.01368 -15.96633 -15.66513 -15.60619 -15.38437 -15.08641 -14.95707 -14.57041 -14.13094 -14.01708 -13.95234 -13.69862 -13.39163 -13.31503 -12.98129 -12.85902 -12.61542 -12.31192 -12.13416 -11.85895 -11.65832 -11.57500 -10.90970 -10.81467 -10.71628 -10.68739 -10.56310 -10.18697 -10.02574 -9.78346 -5.07958 -0.40838 0.11630 0.68891 1.11963 1.31488 1.48353 1.73652 1.83617 1.97061 2.06765 2.53419 3.08340 3.14610 3.17461 3.26016 3.29737 3.41675 3.52030 3.58991 3.68537 3.69473 3.78945 3.94686 4.01435 4.03020 4.17721 4.20455 4.24303 4.37361 4.47201 4.48630 4.54085 4.66895 4.69804 4.81450 4.85138 4.95643 4.98554 5.11987 5.22385 5.29254 5.46080 5.49585 5.52379 5.82821 6.28058 6.39493 6.70716 7.15465 7.18216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.083 4.083 3 Si 0.686 3.314 4 C -0.028 4.028 5 C -0.133 4.133 6 C -0.064 4.064 7 C -0.166 4.166 8 C 0.563 3.437 9 O -0.516 6.516 10 N -0.712 5.712 11 C 0.124 3.876 12 H 0.108 0.892 13 C -0.137 4.137 14 C -0.125 4.125 15 H 0.105 0.895 16 C 0.138 3.862 17 N -0.377 5.377 18 C 0.254 3.746 19 N -0.547 5.547 20 C 0.199 3.801 21 N -0.319 5.319 22 C -0.148 4.148 23 C 0.174 3.826 24 O -0.476 6.476 25 C -0.128 4.128 26 H 0.383 0.617 27 H 0.083 0.917 28 H -0.252 1.252 29 H -0.259 1.259 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.400 0.600 33 H 0.102 0.898 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.218 0.782 38 H 0.217 0.783 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.398 0.602 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.333 2.986 -1.267 3.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.192 4.192 3 Si 0.586 3.414 4 C -0.028 4.028 5 C -0.151 4.151 6 C -0.082 4.082 7 C -0.170 4.170 8 C 0.351 3.649 9 O -0.391 6.391 10 N -0.365 5.365 11 C 0.019 3.981 12 H 0.126 0.874 13 C -0.175 4.175 14 C -0.144 4.144 15 H 0.123 0.877 16 C 0.016 3.984 17 N -0.168 5.168 18 C -0.043 4.043 19 N -0.274 5.274 20 C -0.104 4.104 21 N -0.147 5.147 22 C -0.186 4.186 23 C 0.127 3.873 24 O -0.287 6.287 25 C -0.146 4.146 26 H 0.231 0.769 27 H 0.101 0.899 28 H -0.177 1.177 29 H -0.184 1.184 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.236 0.764 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.234 0.766 38 H 0.233 0.767 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.256 0.744 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.351 2.995 -1.439 3.342 hybrid contribution -1.393 0.229 0.249 1.433 sum -1.744 3.224 -1.191 3.854 Atomic orbital electron populations 1.86574 1.17376 1.80321 1.49970 1.24901 0.84865 1.11369 0.98099 0.94972 0.91618 0.74154 0.80655 1.19334 0.95525 0.93435 0.94557 1.20877 0.99724 1.00043 0.94430 1.21107 0.97598 0.92603 0.96931 1.20368 1.04969 0.94869 0.96794 1.18032 0.78184 0.86278 0.82422 1.90836 1.56983 1.15745 1.75550 1.45574 1.52493 1.15500 1.22929 1.21746 0.95183 0.96441 0.84761 0.87361 1.23355 0.94884 1.00705 0.98595 1.22989 0.93601 0.99621 0.98152 0.87689 1.21922 0.78327 1.03485 0.94658 1.50561 1.11975 1.17924 1.36326 1.26110 0.82667 0.97849 0.97705 1.70566 1.31185 1.10762 1.14902 1.26045 0.90417 0.94800 0.99161 1.78006 1.16530 1.08624 1.11536 1.23543 0.96340 0.96470 1.02272 1.18466 0.93444 0.83598 0.91808 1.84754 1.47351 1.19502 1.77129 1.21313 1.00819 0.94062 0.98415 0.76856 0.89945 1.17683 1.18361 0.84608 0.84810 0.76433 0.87995 0.90104 0.87751 0.88966 0.76613 0.76707 0.90835 0.88749 0.74355 0.84257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.07 12.74 -35.23 -0.45 -0.52 16 2 C -0.08 0.09 2.80 36.01 0.10 0.19 16 3 Si 0.69 -1.38 29.77 -169.99 -5.06 -6.44 16 4 C -0.03 -0.01 5.43 -104.57 -0.57 -0.58 16 5 C -0.13 0.12 8.64 -39.63 -0.34 -0.22 16 6 C -0.06 0.06 9.54 -39.19 -0.37 -0.31 16 7 C -0.17 -0.25 5.89 -104.84 -0.62 -0.87 16 8 C 0.56 1.38 7.76 -12.47 -0.10 1.29 16 9 O -0.52 -3.08 14.76 -16.59 -0.24 -3.32 16 10 N -0.71 0.55 5.21 -54.06 -0.28 0.27 16 11 C 0.12 -0.19 4.32 -67.12 -0.29 -0.48 16 12 H 0.11 0.01 7.46 -51.93 -0.39 -0.38 16 13 C -0.14 0.55 7.39 -25.92 -0.19 0.36 16 14 C -0.12 0.39 3.75 -89.80 -0.34 0.06 16 15 H 0.10 -0.17 8.00 -51.93 -0.42 -0.59 16 16 C 0.14 -0.49 6.39 -4.04 -0.03 -0.51 16 17 N -0.38 0.09 3.69 -62.63 -0.23 -0.14 16 18 C 0.25 -0.04 12.63 -90.65 -1.14 -1.19 16 19 N -0.55 -1.49 11.19 -15.83 -0.18 -1.66 16 20 C 0.20 0.37 13.03 -91.81 -1.20 -0.82 16 21 N -0.32 -0.68 12.45 29.29 0.36 -0.32 16 22 C -0.15 0.29 7.43 -25.92 -0.19 0.10 16 23 C 0.17 0.42 6.72 -38.69 -0.26 0.16 16 24 O -0.48 -1.48 11.58 -40.54 -0.47 -1.95 16 25 C -0.13 -0.18 9.53 -39.47 -0.38 -0.56 16 26 H 0.38 -1.44 8.74 45.56 0.40 -1.05 16 27 H 0.08 -0.21 7.96 -51.93 -0.41 -0.62 16 28 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 29 H -0.26 -0.04 7.11 56.52 0.40 0.36 16 30 H 0.14 -0.41 4.85 -52.49 -0.25 -0.67 16 31 H 0.13 -0.54 6.40 -52.49 -0.34 -0.87 16 32 H 0.40 -1.21 6.73 -40.82 -0.27 -1.49 16 33 H 0.10 -0.55 8.10 -51.93 -0.42 -0.97 16 34 H 0.08 -0.33 8.14 -51.93 -0.42 -0.76 16 35 H 0.10 -0.64 7.79 -51.93 -0.40 -1.04 16 36 H 0.09 -0.36 8.14 -51.93 -0.42 -0.79 16 37 H 0.22 -0.96 8.06 -52.48 -0.42 -1.38 16 38 H 0.22 -0.25 8.06 -52.49 -0.42 -0.68 16 39 H 0.07 0.03 8.14 -51.93 -0.42 -0.40 16 40 H 0.09 -0.29 7.90 -51.93 -0.41 -0.70 16 41 H 0.40 -0.21 9.06 45.56 0.41 0.20 16 42 H 0.14 0.13 8.06 -52.49 -0.42 -0.30 16 LS Contribution 358.46 15.07 5.40 5.40 Total: 0.00 -12.69 358.46 -11.30 -23.98 By element: Atomic # 1 Polarization: -7.68 SS G_CDS: -4.24 Total: -11.92 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -5.91 Total: -3.39 kcal Atomic # 7 Polarization: -1.52 SS G_CDS: -0.33 Total: -1.85 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -1.16 Total: -5.79 kcal Atomic # 14 Polarization: -1.38 SS G_CDS: -5.06 Total: -6.44 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -12.69 -11.30 -23.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13422076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.360 kcal (2) G-P(sol) polarization free energy of solvation -12.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds