Wall clock time and date at job start Sun Mar 7 2021 04:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86298 * 109.47725 * 2 1 4 4 C 1.50705 * 109.47171 * 240.00020 * 2 1 3 5 5 C 1.38498 * 119.80741 * 119.72526 * 4 2 1 6 6 C 1.37836 * 120.30338 * 179.76829 * 5 4 2 7 7 C 1.39670 * 119.90248 * 0.51055 * 6 5 4 8 8 C 1.47533 * 120.18828 * 179.77054 * 7 6 5 9 9 O 1.21594 * 119.99734 * 179.97438 * 8 7 6 10 10 N 1.34770 * 120.00468 * 359.97400 * 8 7 6 11 11 C 1.46501 * 120.00578 * 180.02562 * 10 8 7 12 12 H 1.09003 * 112.84636 * 23.80580 * 11 10 8 13 13 C 1.53779 * 113.61610 * 154.99585 * 11 10 8 14 14 C 1.53783 * 87.07711 * 89.11865 * 13 11 10 15 15 H 1.09006 * 113.61692 * 270.88222 * 14 13 11 16 16 C 1.53007 * 113.61547 * 140.06390 * 14 13 11 17 17 N 1.46493 * 109.47208 * 174.99819 * 16 14 13 18 18 C 1.34434 * 126.82268 * 124.70930 * 17 16 14 19 19 N 1.30834 * 108.07759 * 179.89172 * 18 17 16 20 20 C 1.33239 * 109.83012 * 0.38527 * 19 18 17 21 21 N 1.30721 * 108.94547 * 359.76093 * 20 19 18 22 22 C 1.53776 * 113.61719 * 252.49874 * 11 10 8 23 23 C 1.40180 * 119.61870 * 359.74209 * 7 6 5 24 24 O 1.35655 * 120.14928 * 180.02562 * 23 7 6 25 25 C 1.38100 * 119.80238 * 300.00142 * 4 2 1 26 26 H 0.96709 * 113.99337 * 300.00145 * 1 2 3 27 27 H 1.09004 * 109.47533 * 120.00158 * 2 1 3 28 28 H 1.48506 * 109.99834 * 300.00610 * 3 2 1 29 29 H 1.48502 * 110.00011 * 61.31874 * 3 2 1 30 30 H 1.07998 * 119.84963 * 0.02562 * 5 4 2 31 31 H 1.07996 * 120.04745 * 180.23130 * 6 5 4 32 32 H 0.97002 * 119.99536 * 359.97438 * 10 8 7 33 33 H 1.08997 * 113.61557 * 203.66418 * 13 11 10 34 34 H 1.08998 * 113.61953 * 334.57448 * 13 11 10 35 35 H 1.09001 * 109.46957 * 295.00054 * 16 14 13 36 36 H 1.09005 * 109.46373 * 54.99841 * 16 14 13 37 37 H 1.08004 * 125.95807 * 0.03930 * 18 17 16 38 38 H 1.07992 * 125.52827 * 179.72529 * 20 19 18 39 39 H 1.09005 * 113.60982 * 25.42641 * 22 11 10 40 40 H 1.08993 * 113.61543 * 156.32948 * 22 11 10 41 41 H 0.96692 * 114.00093 * 269.98156 * 24 23 7 42 42 H 1.07998 * 119.95761 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.7226 -0.0318 -2.1424 6 6 3.1916 -0.6730 -3.2689 7 6 2.8592 -2.0100 -3.4982 8 6 3.3535 -2.7009 -4.7044 9 8 3.0624 -3.8651 -4.9004 10 7 4.1277 -2.0418 -5.5890 11 6 4.6181 -2.7277 -6.7871 12 1 3.9966 -3.5763 -7.0731 13 6 4.9381 -1.7778 -7.9532 14 6 6.3571 -1.6676 -7.3706 15 1 6.4677 -0.8673 -6.6388 16 6 7.4571 -1.6564 -8.4340 17 7 8.7543 -1.4295 -7.7923 18 6 9.8473 -2.2064 -7.8876 19 7 10.7968 -1.6610 -7.1717 20 6 10.3474 -0.5444 -6.6003 21 7 9.1015 -0.3603 -6.9504 22 6 6.1209 -3.0503 -6.7405 23 6 2.0537 -2.6918 -2.5755 24 8 1.7247 -3.9907 -2.7873 25 6 1.5952 -2.0326 -1.4450 26 1 -0.3932 0.4418 0.7651 27 1 1.7924 -0.5139 0.8900 28 1 1.5615 2.4679 -1.2085 29 1 1.5881 2.4585 1.2242 30 1 2.9768 1.0032 -1.9680 31 1 3.8114 -0.1410 -3.9753 32 1 4.3596 -1.1130 -5.4328 33 1 4.9036 -2.2591 -8.9306 34 1 4.3790 -0.8427 -7.9208 35 1 7.4710 -2.6150 -8.9526 36 1 7.2616 -0.8585 -9.1505 37 1 9.9281 -3.1201 -8.4578 38 1 10.9194 0.1032 -5.9525 39 1 6.5166 -3.1425 -5.7290 40 1 6.4097 -3.8795 -7.3863 41 1 0.9078 -4.1126 -3.2900 42 1 0.9737 -2.5536 -0.7318 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_13422076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:41:08 Heat of formation + Delta-G solvation = 47.474071 kcal Electronic energy + Delta-G solvation = -27405.429094 eV Core-core repulsion = 23355.656947 eV Total energy + Delta-G solvation = -4049.772147 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.95225 -41.81022 -40.68142 -39.26504 -38.38881 -37.32910 -35.41334 -34.13711 -32.60846 -32.12034 -31.15365 -29.13961 -27.50725 -26.72578 -24.74161 -23.88779 -23.47642 -22.88862 -22.36435 -21.78687 -20.23263 -19.37601 -18.76843 -18.61969 -18.20780 -17.62064 -16.96683 -16.70488 -16.57000 -16.31543 -16.00990 -15.92068 -15.63594 -15.57419 -15.39026 -15.02608 -14.89844 -14.53165 -14.10670 -13.99071 -13.80679 -13.48850 -13.35076 -13.27176 -12.97969 -12.74609 -12.58395 -12.19667 -12.12335 -11.75991 -11.66186 -11.40597 -10.97139 -10.93596 -10.74930 -10.62801 -10.48111 -10.22247 -10.01247 -9.80970 -4.92717 -0.45725 0.10811 0.73212 1.24315 1.48240 1.60343 1.65501 1.94042 1.98555 2.04572 2.50059 3.09419 3.21837 3.39924 3.48148 3.49364 3.55322 3.57253 3.67927 3.77413 3.82611 3.95976 4.07218 4.18824 4.21600 4.23483 4.28175 4.51104 4.54391 4.58766 4.68170 4.72333 4.75991 4.82609 4.96312 4.97963 5.03779 5.09534 5.17166 5.22181 5.34606 5.49819 5.53671 5.56146 5.97374 6.40459 6.52775 6.66651 7.10778 7.16742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.557 6.557 2 C -0.096 4.096 3 Si 0.772 3.228 4 C -0.034 4.034 5 C -0.134 4.134 6 C -0.054 4.054 7 C -0.182 4.182 8 C 0.559 3.441 9 O -0.561 6.561 10 N -0.699 5.699 11 C 0.111 3.889 12 H 0.090 0.910 13 C -0.117 4.117 14 C -0.114 4.114 15 H 0.089 0.911 16 C 0.131 3.869 17 N -0.376 5.376 18 C 0.254 3.746 19 N -0.587 5.587 20 C 0.185 3.815 21 N -0.345 5.345 22 C -0.145 4.145 23 C 0.153 3.847 24 O -0.496 6.496 25 C -0.140 4.140 26 H 0.398 0.602 27 H 0.098 0.902 28 H -0.288 1.288 29 H -0.287 1.287 30 H 0.161 0.839 31 H 0.166 0.834 32 H 0.412 0.588 33 H 0.124 0.876 34 H 0.087 0.913 35 H 0.137 0.863 36 H 0.102 0.898 37 H 0.255 0.745 38 H 0.232 0.768 39 H 0.046 0.954 40 H 0.109 0.891 41 H 0.407 0.593 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.217 4.093 -2.337 4.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.204 4.204 3 Si 0.676 3.324 4 C -0.035 4.035 5 C -0.151 4.151 6 C -0.072 4.072 7 C -0.186 4.186 8 C 0.347 3.653 9 O -0.440 6.440 10 N -0.351 5.351 11 C 0.005 3.995 12 H 0.108 0.892 13 C -0.155 4.155 14 C -0.133 4.133 15 H 0.108 0.892 16 C 0.011 3.989 17 N -0.166 5.166 18 C -0.042 4.042 19 N -0.315 5.315 20 C -0.117 4.117 21 N -0.174 5.174 22 C -0.184 4.184 23 C 0.107 3.893 24 O -0.309 6.309 25 C -0.159 4.159 26 H 0.249 0.751 27 H 0.116 0.884 28 H -0.215 1.215 29 H -0.214 1.214 30 H 0.178 0.822 31 H 0.183 0.817 32 H 0.250 0.750 33 H 0.142 0.858 34 H 0.106 0.894 35 H 0.154 0.846 36 H 0.120 0.880 37 H 0.270 0.730 38 H 0.248 0.752 39 H 0.065 0.935 40 H 0.127 0.873 41 H 0.267 0.733 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.199 4.119 -2.516 4.831 hybrid contribution -1.623 -0.112 0.591 1.731 sum -1.424 4.007 -1.925 4.668 Atomic orbital electron populations 1.86532 1.18116 1.80911 1.51196 1.25197 0.84497 1.12607 0.98110 0.94028 0.90149 0.71250 0.77000 1.19629 0.95445 0.93097 0.95330 1.21182 0.98979 1.01019 0.93919 1.21440 0.96919 0.91519 0.97322 1.20445 1.05577 0.95972 0.96610 1.18261 0.78185 0.85878 0.82933 1.90803 1.58967 1.17630 1.76640 1.45501 1.51200 1.15892 1.22495 1.21906 0.95089 0.96981 0.85506 0.89183 1.23307 0.93670 1.00299 0.98262 1.22824 0.94487 0.98054 0.97954 0.89230 1.22255 0.76652 1.05595 0.94386 1.50745 1.12947 1.17184 1.35768 1.26827 0.82048 0.98418 0.96915 1.70543 1.32902 1.11639 1.16385 1.26447 0.90673 0.95102 0.99496 1.77920 1.16753 1.10085 1.12610 1.23551 0.95651 0.97954 1.01225 1.18719 0.94389 0.83521 0.92687 1.84707 1.48195 1.20489 1.77502 1.21346 1.01431 0.94787 0.98292 0.75133 0.88400 1.21520 1.21431 0.82229 0.81666 0.75031 0.85825 0.89410 0.84551 0.88030 0.72963 0.75221 0.93546 0.87252 0.73331 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.24 12.74 -148.98 -1.90 -2.14 16 2 C -0.10 0.23 2.80 71.24 0.20 0.43 16 3 Si 0.77 -3.75 29.77 68.60 2.04 -1.70 16 4 C -0.03 -0.03 5.43 -19.83 -0.11 -0.14 16 5 C -0.13 0.34 8.64 22.24 0.19 0.53 16 6 C -0.05 0.13 9.54 22.52 0.21 0.34 16 7 C -0.18 -0.76 5.89 -20.01 -0.12 -0.88 16 8 C 0.56 3.60 7.76 86.70 0.67 4.27 16 9 O -0.56 -8.13 14.76 16.90 0.25 -7.88 16 10 N -0.70 0.78 5.21 -443.21 -2.31 -1.53 16 11 C 0.11 -0.32 4.32 45.52 0.20 -0.12 16 12 H 0.09 0.11 7.46 -2.39 -0.02 0.09 16 13 C -0.12 1.14 7.39 31.12 0.23 1.37 16 14 C -0.11 0.85 3.75 -10.27 -0.04 0.81 16 15 H 0.09 -0.34 8.00 -2.38 -0.02 -0.36 16 16 C 0.13 -1.19 6.39 86.38 0.55 -0.64 16 17 N -0.38 0.54 3.69 -352.05 -1.30 -0.76 16 18 C 0.25 -0.34 12.63 180.36 2.28 1.94 16 19 N -0.59 -3.25 11.19 -204.00 -2.28 -5.53 16 20 C 0.19 0.80 13.03 180.76 2.36 3.15 16 21 N -0.35 -1.49 12.45 -61.25 -0.76 -2.26 16 22 C -0.15 0.60 7.43 31.12 0.23 0.83 16 23 C 0.15 1.04 6.72 22.84 0.15 1.20 16 24 O -0.50 -4.49 11.58 -68.79 -0.80 -5.29 16 25 C -0.14 -0.60 9.53 22.34 0.21 -0.39 16 26 H 0.40 -2.98 8.74 -74.05 -0.65 -3.63 16 27 H 0.10 -0.55 7.96 -2.38 -0.02 -0.57 16 28 H -0.29 -0.35 7.11 99.48 0.71 0.36 16 29 H -0.29 0.03 7.11 99.48 0.71 0.73 16 30 H 0.16 -1.25 4.85 -2.91 -0.01 -1.27 16 31 H 0.17 -1.60 6.40 -2.91 -0.02 -1.62 16 32 H 0.41 -2.69 6.73 -92.71 -0.62 -3.32 16 33 H 0.12 -1.67 8.10 -2.39 -0.02 -1.69 16 34 H 0.09 -0.91 8.14 -2.39 -0.02 -0.92 16 35 H 0.14 -2.11 7.79 -2.39 -0.02 -2.12 16 36 H 0.10 -1.05 8.14 -2.38 -0.02 -1.06 16 37 H 0.25 -2.79 8.06 -2.91 -0.02 -2.81 16 38 H 0.23 -0.34 8.06 -2.91 -0.02 -0.37 16 39 H 0.05 0.08 8.14 -2.38 -0.02 0.07 16 40 H 0.11 -0.79 7.90 -2.39 -0.02 -0.81 16 41 H 0.41 0.88 9.06 -74.06 -0.67 0.20 16 42 H 0.14 0.53 8.06 -2.91 -0.02 0.51 16 Total: 0.00 -32.35 358.46 -0.64 -32.98 By element: Atomic # 1 Polarization: -17.80 SS G_CDS: -0.80 Total: -18.60 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 7.23 Total: 12.71 kcal Atomic # 7 Polarization: -3.42 SS G_CDS: -6.65 Total: -10.08 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -2.44 Total: -15.31 kcal Atomic # 14 Polarization: -3.75 SS G_CDS: 2.04 Total: -1.70 kcal Total: -32.35 -0.64 -32.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13422076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.458 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds