Wall clock time and date at job start Sun Mar 7 2021 04:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37786 * 119.84924 * 2 1 4 4 C 1.39705 * 119.90589 * 179.97438 * 3 2 1 5 5 C 1.47550 * 120.18684 * 180.02562 * 4 3 2 6 6 O 1.21590 * 119.99842 * 179.97438 * 5 4 3 7 7 N 1.34774 * 119.99902 * 0.02562 * 5 4 3 8 8 C 1.46501 * 119.99541 * 179.97438 * 7 5 4 9 9 H 1.08997 * 112.85042 * 336.19334 * 8 7 5 10 10 C 1.53785 * 113.61415 * 107.49979 * 8 7 5 11 11 C 1.53785 * 87.07777 * 89.11300 * 10 8 7 12 12 H 1.08995 * 113.69425 * 270.86851 * 11 10 8 13 13 C 1.53005 * 113.61236 * 139.98063 * 11 10 8 14 14 N 1.46501 * 109.47040 * 87.50015 * 13 11 10 15 15 C 1.34426 * 126.82101 * 124.70998 * 14 13 11 16 16 N 1.30834 * 108.08209 * 179.89831 * 15 14 13 17 17 C 1.33247 * 109.82153 * 0.37899 * 16 15 14 18 18 N 1.30714 * 108.94968 * 359.76685 * 17 16 15 19 19 C 1.53775 * 87.08111 * 25.43433 * 11 10 8 20 20 C 1.40131 * 119.62247 * 359.97438 * 4 3 2 21 21 O 1.35656 * 120.15338 * 180.02562 * 20 4 3 22 22 C 1.38714 * 119.69743 * 0.02562 * 20 4 3 23 23 C 1.50696 * 119.95799 * 179.97438 * 22 20 4 24 24 O 1.42898 * 109.47204 * 74.99606 * 23 22 20 25 25 Si 1.86300 * 109.47062 * 194.99706 * 23 22 20 26 26 C 1.38056 * 120.08113 * 359.97438 * 22 20 4 27 27 H 1.08997 * 109.46991 * 270.01543 * 1 2 3 28 28 H 1.08993 * 109.47448 * 30.02326 * 1 2 3 29 29 H 1.09006 * 109.46775 * 150.02095 * 1 2 3 30 30 H 1.07996 * 120.04811 * 359.96159 * 3 2 1 31 31 H 0.96998 * 120.00121 * 359.97438 * 7 5 4 32 32 H 1.08998 * 113.61429 * 203.66154 * 10 8 7 33 33 H 1.09003 * 113.61613 * 334.57137 * 10 8 7 34 34 H 1.08994 * 109.47065 * 207.50587 * 13 11 10 35 35 H 1.09004 * 109.47121 * 327.50432 * 13 11 10 36 36 H 1.08001 * 125.96253 * 0.03728 * 15 14 13 37 37 H 1.08001 * 125.52146 * 179.79875 * 17 16 15 38 38 H 1.09001 * 113.61510 * 220.01493 * 19 11 10 39 39 H 1.09002 * 113.61823 * 89.11389 * 19 11 10 40 40 H 0.96692 * 114.00274 * 89.99959 * 21 20 4 41 41 H 1.09004 * 109.46969 * 314.99707 * 23 22 20 42 42 H 0.96688 * 114.00406 * 60.00236 * 24 23 22 43 43 H 1.48499 * 109.99723 * 58.67959 * 25 23 22 44 44 H 1.48501 * 109.99858 * 179.97438 * 25 23 22 45 45 H 1.08002 * 119.79727 * 180.27593 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1951 0.0000 4 6 3.5898 1.1965 0.0005 5 6 4.3305 2.4726 0.0011 6 8 5.5464 2.4698 0.0021 7 7 3.6592 3.6413 0.0016 8 6 4.3947 4.9083 0.0028 9 1 5.4018 4.8128 0.4085 10 6 4.3380 5.6547 -1.3406 11 6 3.0607 6.3342 -0.8194 12 1 2.1480 5.7825 -1.0446 13 6 2.9634 7.8172 -1.1831 14 7 2.3324 7.9573 -2.4978 15 6 1.2426 8.6860 -2.7949 16 7 1.0004 8.5516 -4.0736 17 6 1.9053 7.7418 -4.6222 18 7 2.7423 7.3519 -3.6970 19 6 3.5992 6.0818 0.5986 20 6 4.2837 -0.0210 0.0016 21 8 5.6402 -0.0323 0.0027 22 6 3.5771 -1.2147 0.0016 23 6 4.3173 -2.5273 0.0022 24 8 4.8545 -2.7707 1.3038 25 14 3.1446 -3.9017 -0.4525 26 6 2.1966 -1.2016 0.0011 27 1 -0.3633 0.0003 1.0276 28 1 -0.3634 0.8897 -0.5141 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6511 2.1294 -0.0006 31 1 2.6893 3.6435 0.0013 32 1 5.1685 6.3441 -1.4924 33 1 4.1670 5.0014 -2.1962 34 1 2.3639 8.3361 -0.4352 35 1 3.9631 8.2506 -1.2119 36 1 0.6685 9.2807 -2.0998 37 1 1.9415 7.4546 -5.6627 38 1 2.8319 5.7732 1.3086 39 1 4.2278 6.8879 0.9770 40 1 6.0328 -0.0351 0.8863 41 1 5.1290 -2.4871 -0.7242 42 1 4.1874 -2.8191 2.0019 43 1 2.5548 -3.6441 -1.7907 44 1 3.8626 -5.2016 -0.4561 45 1 1.6510 -2.1337 0.0056 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_13422088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:41:12 Heat of formation + Delta-G solvation = 39.613497 kcal Electronic energy + Delta-G solvation = -29758.822138 eV Core-core repulsion = 25553.171512 eV Total energy + Delta-G solvation = -4205.650626 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.97696 -41.90617 -40.81692 -39.30770 -38.08112 -37.64853 -35.45071 -34.17155 -33.07016 -32.51261 -32.15206 -29.08259 -27.54381 -26.80964 -26.74702 -25.63042 -24.20063 -22.85223 -22.44110 -22.05470 -21.70670 -20.39972 -19.62842 -18.57350 -18.20037 -17.89556 -17.41428 -17.01073 -16.78026 -16.68562 -16.18100 -16.06527 -15.97041 -15.70872 -15.43035 -15.24703 -15.03040 -14.80393 -14.61896 -14.40660 -14.25254 -14.02726 -13.68701 -13.51287 -13.30154 -13.14336 -12.90569 -12.83880 -12.58670 -12.23457 -12.19844 -12.13124 -11.80654 -11.72724 -11.28762 -11.05636 -10.96645 -10.78958 -10.56131 -10.46241 -10.30177 -10.04417 -9.53569 -5.08420 -0.39357 0.02489 0.71815 1.22231 1.46789 1.61037 1.65011 1.91197 1.98933 2.01629 2.50352 3.14370 3.29259 3.38509 3.43330 3.48923 3.54209 3.57457 3.63466 3.75459 3.77274 3.96077 4.09093 4.12291 4.13935 4.21783 4.32075 4.43421 4.50060 4.57655 4.58470 4.65693 4.73951 4.78111 4.82063 4.89955 4.95520 4.96680 5.01244 5.10774 5.15656 5.24703 5.32964 5.39334 5.45933 5.52529 5.65616 5.96796 6.37855 6.65387 6.73963 7.08782 7.14545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.063 4.063 4 C -0.182 4.182 5 C 0.556 3.444 6 O -0.565 6.565 7 N -0.696 5.696 8 C 0.108 3.892 9 H 0.084 0.916 10 C -0.140 4.140 11 C -0.108 4.108 12 H 0.091 0.909 13 C 0.130 3.870 14 N -0.378 5.378 15 C 0.257 3.743 16 N -0.585 5.585 17 C 0.183 3.817 18 N -0.346 5.346 19 C -0.111 4.111 20 C 0.159 3.841 21 O -0.496 6.496 22 C -0.159 4.159 23 C -0.075 4.075 24 O -0.553 6.553 25 Si 0.797 3.203 26 C -0.069 4.069 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.157 0.843 31 H 0.412 0.588 32 H 0.090 0.910 33 H 0.043 0.957 34 H 0.147 0.853 35 H 0.094 0.906 36 H 0.260 0.740 37 H 0.227 0.773 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.403 0.597 41 H 0.091 0.909 42 H 0.396 0.604 43 H -0.285 1.285 44 H -0.299 1.299 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.252 2.310 8.196 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.081 4.081 4 C -0.186 4.186 5 C 0.344 3.656 6 O -0.444 6.444 7 N -0.348 5.348 8 C 0.002 3.998 9 H 0.102 0.898 10 C -0.179 4.179 11 C -0.127 4.127 12 H 0.110 0.890 13 C 0.010 3.990 14 N -0.169 5.169 15 C -0.039 4.039 16 N -0.313 5.313 17 C -0.120 4.120 18 N -0.174 5.174 19 C -0.150 4.150 20 C 0.113 3.887 21 O -0.308 6.308 22 C -0.160 4.160 23 C -0.184 4.184 24 O -0.361 6.361 25 Si 0.702 3.298 26 C -0.087 4.087 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.174 0.826 31 H 0.250 0.750 32 H 0.108 0.892 33 H 0.062 0.938 34 H 0.164 0.836 35 H 0.112 0.888 36 H 0.276 0.724 37 H 0.243 0.757 38 H 0.117 0.883 39 H 0.139 0.861 40 H 0.262 0.738 41 H 0.108 0.892 42 H 0.246 0.754 43 H -0.212 1.212 44 H -0.227 1.227 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.670 1.391 6.503 10.926 hybrid contribution 0.910 0.419 -0.161 1.015 sum -7.760 1.810 6.342 10.184 Atomic orbital electron populations 1.20936 0.87678 1.04477 1.04277 1.20159 0.98303 0.91637 0.99173 1.21403 0.90845 0.99960 0.95920 1.20410 0.95162 0.92439 1.10574 1.18372 0.86927 0.84474 0.75782 1.90808 1.15078 1.87908 1.50599 1.45447 1.10521 1.04323 1.74527 1.21942 0.97047 0.83016 0.97762 0.89793 1.23408 0.98678 0.99225 0.96589 1.22765 0.98056 0.94637 0.97273 0.89045 1.22268 1.00712 0.97710 0.78307 1.50776 1.22379 1.34985 1.08726 1.26924 0.88457 0.94511 0.94001 1.70549 1.29624 1.23000 1.08130 1.26406 0.89690 0.94507 1.01409 1.78038 1.24911 1.22298 0.92167 1.23277 0.99938 0.96677 0.95076 1.18602 0.83497 0.91016 0.95630 1.84655 1.15657 1.96098 1.34416 1.20764 0.94934 0.95023 1.05236 1.25238 1.04119 0.99970 0.89055 1.86497 1.38666 1.94314 1.16597 0.94035 0.80323 0.72905 0.82582 1.21324 0.91702 0.99533 0.96122 0.88908 0.90372 0.89908 0.82590 0.75012 0.89155 0.93821 0.83556 0.88755 0.72395 0.75679 0.88329 0.86134 0.73779 0.89187 0.75417 1.21236 1.22709 0.81738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.27 10.00 71.24 0.71 1.99 16 2 C -0.09 0.48 5.87 -19.90 -0.12 0.36 16 3 C -0.06 0.19 9.18 22.52 0.21 0.40 16 4 C -0.18 -0.84 5.89 -20.01 -0.12 -0.96 16 5 C 0.56 4.40 7.76 86.70 0.67 5.08 16 6 O -0.56 -9.55 14.76 16.92 0.25 -9.31 16 7 N -0.70 0.11 5.21 -443.19 -2.31 -2.20 16 8 C 0.11 -0.10 4.32 45.52 0.20 0.09 16 9 H 0.08 0.34 7.46 -2.39 -0.02 0.33 16 10 C -0.14 0.00 7.43 31.12 0.23 0.23 16 11 C -0.11 0.78 3.73 -10.27 -0.04 0.74 16 12 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 13 C 0.13 -1.17 6.39 86.38 0.55 -0.62 16 14 N -0.38 0.48 3.69 -352.05 -1.30 -0.82 16 15 C 0.26 -0.58 12.63 180.36 2.28 1.70 16 16 N -0.58 -3.12 11.19 -204.00 -2.28 -5.40 16 17 C 0.18 1.00 13.03 180.76 2.36 3.35 16 18 N -0.35 -2.09 12.57 -61.24 -0.77 -2.86 16 19 C -0.11 1.11 7.39 31.12 0.23 1.34 16 20 C 0.16 1.16 6.69 22.84 0.15 1.31 16 21 O -0.50 -5.82 10.91 -68.80 -0.75 -6.57 16 22 C -0.16 -0.31 5.27 -19.80 -0.10 -0.41 16 23 C -0.08 -0.15 2.38 71.23 0.17 0.01 16 24 O -0.55 -0.68 12.88 -148.98 -1.92 -2.60 16 25 Si 0.80 -1.80 29.91 68.60 2.05 0.26 16 26 C -0.07 0.27 8.30 22.30 0.19 0.46 16 27 H 0.09 -1.22 8.14 -2.39 -0.02 -1.24 16 28 H 0.08 -0.91 8.08 -2.39 -0.02 -0.93 16 29 H 0.08 -0.99 8.08 -2.38 -0.02 -1.01 16 30 H 0.16 -1.48 6.40 -2.91 -0.02 -1.50 16 31 H 0.41 -2.67 6.73 -92.71 -0.62 -3.30 16 32 H 0.09 0.03 7.90 -2.39 -0.02 0.01 16 33 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.15 -2.50 8.09 -2.39 -0.02 -2.52 16 35 H 0.09 -0.82 7.84 -2.39 -0.02 -0.84 16 36 H 0.26 -3.35 8.06 -2.91 -0.02 -3.38 16 37 H 0.23 0.10 8.06 -2.91 -0.02 0.08 16 38 H 0.10 -1.25 8.14 -2.39 -0.02 -1.27 16 39 H 0.12 -1.55 8.10 -2.39 -0.02 -1.57 16 40 H 0.40 2.65 9.06 -74.06 -0.67 1.98 16 41 H 0.09 0.66 7.83 -2.39 -0.02 0.65 16 42 H 0.40 -3.31 8.70 -74.07 -0.64 -3.95 16 43 H -0.29 -0.78 7.11 99.48 0.71 -0.08 16 44 H -0.30 -1.68 7.11 99.48 0.71 -0.97 16 45 H 0.17 -1.70 5.10 -2.91 -0.01 -1.71 16 Total: 0.00 -35.64 379.65 -0.30 -35.94 By element: Atomic # 1 Polarization: -20.69 SS G_CDS: -0.83 Total: -21.52 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 7.56 Total: 15.06 kcal Atomic # 7 Polarization: -4.61 SS G_CDS: -6.66 Total: -11.27 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -2.42 Total: -18.47 kcal Atomic # 14 Polarization: -1.80 SS G_CDS: 2.05 Total: 0.26 kcal Total: -35.64 -0.30 -35.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13422088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.551 kcal (2) G-P(sol) polarization free energy of solvation -35.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds