Wall clock time and date at job start Sun Mar 7 2021 04:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.39055 * 110.99854 * 236.04434 * 2 1 3 5 5 C 1.39191 * 119.93184 * 240.00353 * 4 2 1 6 6 C 1.50697 * 119.96790 * 359.97438 * 5 4 2 7 7 O 1.42905 * 109.46908 * 75.00284 * 6 5 4 8 8 Si 1.86299 * 109.47352 * 195.00209 * 6 5 4 9 9 C 1.37629 * 120.06745 * 180.02562 * 5 4 2 10 10 C 1.39775 * 119.93266 * 359.97438 * 9 5 4 11 11 C 1.47516 * 120.07338 * 179.97438 * 10 9 5 12 12 O 1.21601 * 119.99840 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00293 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99899 * 179.97438 * 13 11 10 15 15 H 1.09000 * 112.84645 * 23.80718 * 14 13 11 16 16 C 1.53783 * 113.61134 * 155.00253 * 14 13 11 17 17 C 1.53785 * 87.07846 * 89.11472 * 16 14 13 18 18 H 1.08991 * 113.61806 * 270.80037 * 17 16 14 19 19 C 1.53006 * 113.61104 * 139.97688 * 17 16 14 20 20 N 1.46502 * 109.46902 * 175.00080 * 19 17 16 21 21 C 1.34424 * 126.82064 * 125.00289 * 20 19 17 22 22 N 1.30831 * 108.07721 * 179.97438 * 21 20 19 23 23 C 1.33251 * 109.82944 * 359.97438 * 22 21 20 24 24 N 1.30713 * 108.94350 * 359.75769 * 23 22 21 25 25 C 1.53778 * 113.61166 * 252.49945 * 14 13 11 26 26 C 1.39814 * 119.86006 * 359.97438 * 10 9 5 27 27 C 1.37593 * 119.93201 * 359.74793 * 26 10 9 28 28 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 29 29 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 30 30 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 31 31 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 32 32 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 33 33 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 34 34 H 1.09003 * 109.47243 * 314.99945 * 6 5 4 35 35 H 0.96696 * 113.99921 * 299.99835 * 7 6 5 36 36 H 1.48500 * 109.99905 * 59.99850 * 8 6 5 37 37 H 1.48492 * 110.00052 * 181.31993 * 8 6 5 38 38 H 1.08002 * 120.03811 * 179.97438 * 9 5 4 39 39 H 0.96996 * 120.00036 * 0.02562 * 13 11 10 40 40 H 1.08992 * 113.61289 * 203.66530 * 16 14 13 41 41 H 1.08999 * 113.61487 * 334.57124 * 16 14 13 42 42 H 1.08998 * 109.47257 * 295.00140 * 19 17 16 43 43 H 1.09001 * 109.46762 * 55.00504 * 19 17 16 44 44 H 1.07997 * 125.96100 * 359.97438 * 21 20 19 45 45 H 1.07995 * 125.52864 * 179.97438 * 23 22 21 46 46 H 1.09003 * 113.61894 * 25.43768 * 25 14 13 47 47 H 1.09004 * 113.61118 * 156.33542 * 25 14 13 48 48 H 1.08003 * 120.03829 * 180.02562 * 26 10 9 49 49 H 1.08002 * 119.96655 * 180.25069 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9673 -0.7251 -1.0768 5 6 2.7792 -1.8331 -0.8519 6 6 3.1174 -2.2448 0.5578 7 8 1.9823 -2.8747 1.1553 8 14 4.5471 -3.4388 0.5300 9 6 3.2743 -2.5525 -1.9156 10 6 2.9607 -2.1697 -3.2228 11 6 3.4902 -2.9382 -4.3653 12 8 4.2007 -3.9056 -4.1703 13 7 3.1864 -2.5682 -5.6252 14 6 3.7128 -3.3311 -6.7598 15 1 3.9671 -4.3581 -6.4976 16 6 2.8559 -3.2140 -8.0314 17 6 3.7051 -1.9847 -8.3955 18 1 3.3107 -1.0488 -7.9998 19 6 4.0552 -1.9004 -9.8826 20 7 4.7582 -0.6427 -10.1482 21 6 5.9605 -0.4996 -10.7320 22 7 6.2360 0.7782 -10.7861 23 6 5.2377 1.4790 -10.2495 24 7 4.3067 0.6532 -9.8495 25 6 4.8212 -2.5982 -7.5337 26 6 2.1440 -1.0569 -3.4454 27 6 1.6474 -0.3452 -2.3776 28 1 -0.3634 -1.0252 0.0708 29 1 -0.3633 0.4513 -0.9233 30 1 -0.3633 0.5740 0.8525 31 1 1.5899 1.9163 0.8525 32 1 3.0829 1.3431 0.0709 33 1 1.7045 1.8723 -0.9233 34 1 3.3912 -1.3635 1.1379 35 1 1.1989 -2.3098 1.2032 36 1 5.7339 -2.7958 -0.0891 37 1 4.8698 -3.8770 1.9116 38 1 3.9046 -3.4119 -1.7405 39 1 2.6199 -1.7964 -5.7807 40 1 2.9799 -4.0498 -8.7199 41 1 1.8102 -2.9791 -7.8331 42 1 4.6965 -2.7392 -10.1530 43 1 3.1403 -1.9371 -10.4739 44 1 6.5893 -1.2998 -11.0934 45 1 5.2019 2.5548 -10.1627 46 1 5.3620 -1.8663 -6.9338 47 1 5.4825 -3.2658 -8.0862 48 1 1.8995 -0.7589 -4.4543 49 1 1.0132 0.5120 -2.5488 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_13422196.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:41:16 Heat of formation + Delta-G solvation = 101.946225 kcal Electronic energy + Delta-G solvation = -31586.790729 eV Core-core repulsion = 27326.024097 eV Total energy + Delta-G solvation = -4260.766633 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.97898 -41.87221 -40.99923 -39.54345 -37.72717 -37.32830 -35.48250 -34.08970 -32.71399 -32.15351 -31.34412 -29.07227 -28.62052 -26.97069 -26.73381 -26.31852 -24.52691 -23.43093 -22.99565 -22.89508 -22.37618 -21.34273 -20.24552 -19.21722 -18.31615 -18.01997 -17.84897 -17.42036 -16.96223 -16.62083 -16.45163 -16.10560 -16.02682 -15.92945 -15.79576 -15.39211 -15.20185 -15.14184 -14.98581 -14.89524 -14.57549 -14.22466 -13.98325 -13.84573 -13.58238 -13.45736 -13.30152 -13.11296 -13.04703 -12.76486 -12.75016 -12.66717 -12.22935 -12.14525 -11.74027 -11.45210 -11.41299 -11.31642 -11.07959 -10.96324 -10.77921 -10.50377 -10.22552 -10.14050 -9.83963 -9.66006 -4.95083 -0.45981 0.09981 0.70637 1.30406 1.46009 1.51295 1.61345 1.83864 1.96818 2.01587 2.57138 2.68769 3.38610 3.44873 3.48337 3.49044 3.54630 3.56483 3.66520 3.80912 3.87066 3.93920 3.99123 4.07328 4.14883 4.16624 4.20956 4.31667 4.35923 4.39751 4.51182 4.53701 4.54828 4.61216 4.65739 4.71111 4.76411 4.83095 4.89590 4.94999 4.96483 4.98284 5.02972 5.08248 5.15242 5.16709 5.31962 5.46351 5.46515 5.54962 5.72452 5.95374 6.15371 6.37204 6.61821 7.05710 7.13959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.527 5.527 3 C 0.026 3.974 4 C 0.127 3.873 5 C -0.112 4.112 6 C -0.058 4.058 7 O -0.543 6.543 8 Si 0.774 3.226 9 C -0.058 4.058 10 C -0.147 4.147 11 C 0.560 3.440 12 O -0.570 6.570 13 N -0.697 5.697 14 C 0.110 3.890 15 H 0.095 0.905 16 C -0.117 4.117 17 C -0.115 4.115 18 H 0.087 0.913 19 C 0.131 3.869 20 N -0.376 5.376 21 C 0.255 3.745 22 N -0.587 5.587 23 C 0.185 3.815 24 N -0.346 5.346 25 C -0.145 4.145 26 C -0.060 4.060 27 C -0.152 4.152 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.374 0.626 36 H -0.276 1.276 37 H -0.285 1.285 38 H 0.139 0.861 39 H 0.411 0.589 40 H 0.125 0.875 41 H 0.087 0.913 42 H 0.138 0.862 43 H 0.101 0.899 44 H 0.256 0.744 45 H 0.230 0.770 46 H 0.046 0.954 47 H 0.111 0.889 48 H 0.156 0.844 49 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.384 0.704 -4.423 7.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.249 5.249 3 C -0.121 4.121 4 C 0.032 3.968 5 C -0.114 4.114 6 C -0.167 4.167 7 O -0.350 6.350 8 Si 0.677 3.323 9 C -0.077 4.077 10 C -0.150 4.150 11 C 0.349 3.651 12 O -0.450 6.450 13 N -0.349 5.349 14 C 0.004 3.996 15 H 0.113 0.887 16 C -0.155 4.155 17 C -0.135 4.135 18 H 0.105 0.895 19 C 0.011 3.989 20 N -0.166 5.166 21 C -0.041 4.041 22 N -0.315 5.315 23 C -0.118 4.118 24 N -0.175 5.175 25 C -0.184 4.184 26 C -0.079 4.079 27 C -0.172 4.172 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.223 0.777 36 H -0.202 1.202 37 H -0.212 1.212 38 H 0.156 0.844 39 H 0.249 0.751 40 H 0.143 0.857 41 H 0.105 0.895 42 H 0.156 0.844 43 H 0.119 0.881 44 H 0.271 0.729 45 H 0.247 0.753 46 H 0.065 0.935 47 H 0.129 0.871 48 H 0.174 0.826 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.957 -0.557 -3.327 5.200 hybrid contribution -0.844 2.316 -0.193 2.473 sum -4.801 1.759 -3.520 6.207 Atomic orbital electron populations 1.22601 0.83877 1.03464 1.02413 1.59465 1.10021 1.15169 1.40233 1.22518 1.00671 0.86499 1.02365 1.18968 0.94808 0.93111 0.89920 1.20205 0.99423 0.95785 0.95955 1.25154 0.97623 1.03962 0.90010 1.86690 1.22664 1.43347 1.82304 0.92257 0.72899 0.86162 0.80954 1.21080 0.97222 0.98113 0.91271 1.19883 1.03231 0.98952 0.92972 1.18343 0.79643 0.83471 0.83667 1.90793 1.39108 1.29232 1.85861 1.45506 1.52103 1.32834 1.04432 1.21944 0.95940 0.96174 0.85501 0.88714 1.23310 0.99079 0.97974 0.95162 1.22828 0.97839 0.99200 0.93604 0.89477 1.22274 0.99190 0.80683 0.96783 1.50753 1.15469 1.06489 1.43899 1.26838 0.87209 0.96398 0.93687 1.70545 1.30541 1.03896 1.26503 1.26430 0.87475 1.02191 0.95695 1.77915 1.24526 0.88993 1.26062 1.23560 0.96764 0.99724 0.98313 1.21418 0.93634 0.92284 1.00594 1.21815 1.01680 1.01525 0.92190 0.90735 0.93868 0.89315 0.89299 0.91970 0.93831 0.90296 0.77653 1.20154 1.21180 0.84420 0.75065 0.85697 0.89470 0.84410 0.88091 0.72862 0.75338 0.93539 0.87067 0.82648 0.83190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.13 9.20 127.69 1.17 1.05 16 2 N -0.53 1.14 3.67 -745.08 -2.73 -1.60 16 3 C 0.03 -0.10 9.38 127.69 1.20 1.10 16 4 C 0.13 0.03 4.66 38.47 0.18 0.20 16 5 C -0.11 -0.41 5.28 -19.78 -0.10 -0.51 16 6 C -0.06 -0.26 2.29 71.24 0.16 -0.10 16 7 O -0.54 -2.82 12.65 -148.98 -1.89 -4.71 16 8 Si 0.77 4.42 30.17 68.60 2.07 6.49 16 9 C -0.06 -0.29 8.19 22.50 0.18 -0.11 16 10 C -0.15 -0.39 5.88 -20.08 -0.12 -0.51 16 11 C 0.56 2.69 7.76 86.69 0.67 3.36 16 12 O -0.57 -7.15 15.94 -4.03 -0.06 -7.21 16 13 N -0.70 1.54 5.21 -443.20 -2.31 -0.77 16 14 C 0.11 -0.44 4.33 45.52 0.20 -0.24 16 15 H 0.09 -0.03 7.46 -2.39 -0.02 -0.05 16 16 C -0.12 1.22 7.39 31.12 0.23 1.45 16 17 C -0.12 0.92 3.76 -10.26 -0.04 0.88 16 18 H 0.09 -0.35 8.01 -2.39 -0.02 -0.37 16 19 C 0.13 -1.24 6.39 86.38 0.55 -0.69 16 20 N -0.38 0.63 3.69 -352.05 -1.30 -0.67 16 21 C 0.25 -0.40 12.63 180.36 2.28 1.88 16 22 N -0.59 -3.20 11.19 -204.01 -2.28 -5.48 16 23 C 0.18 0.81 13.03 180.76 2.36 3.16 16 24 N -0.35 -1.50 12.46 -61.24 -0.76 -2.27 16 25 C -0.15 0.74 7.43 31.12 0.23 0.97 16 26 C -0.06 0.18 9.53 22.50 0.21 0.40 16 27 C -0.15 0.45 8.53 22.36 0.19 0.64 16 28 H 0.07 -0.41 7.84 -2.39 -0.02 -0.43 16 29 H 0.04 -0.30 7.08 -2.39 -0.02 -0.32 16 30 H 0.09 -0.66 8.12 -2.38 -0.02 -0.68 16 31 H 0.09 -0.52 8.12 -2.38 -0.02 -0.54 16 32 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.04 -0.24 7.33 -2.39 -0.02 -0.26 16 34 H 0.08 0.35 7.78 -2.39 -0.02 0.33 16 35 H 0.37 0.28 8.06 -74.06 -0.60 -0.31 16 36 H -0.28 -2.60 7.11 99.48 0.71 -1.89 16 37 H -0.28 -3.12 7.11 99.48 0.71 -2.41 16 38 H 0.14 0.80 4.70 -2.91 -0.01 0.78 16 39 H 0.41 -2.97 6.72 -92.71 -0.62 -3.59 16 40 H 0.12 -1.79 8.10 -2.39 -0.02 -1.81 16 41 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 42 H 0.14 -2.21 7.79 -2.39 -0.02 -2.23 16 43 H 0.10 -1.07 8.14 -2.39 -0.02 -1.09 16 44 H 0.26 -2.90 8.06 -2.91 -0.02 -2.92 16 45 H 0.23 -0.29 8.06 -2.91 -0.02 -0.31 16 46 H 0.05 0.04 8.14 -2.39 -0.02 0.02 16 47 H 0.11 -0.93 7.90 -2.38 -0.02 -0.95 16 48 H 0.16 -1.46 6.39 -2.91 -0.02 -1.48 16 49 H 0.15 -1.06 6.99 -2.91 -0.02 -1.08 16 Total: 0.00 -26.06 401.89 0.10 -25.95 By element: Atomic # 1 Polarization: -22.48 SS G_CDS: -0.19 Total: -22.67 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 9.56 Total: 12.94 kcal Atomic # 7 Polarization: -1.40 SS G_CDS: -9.39 Total: -10.79 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -1.95 Total: -11.92 kcal Atomic # 14 Polarization: 4.42 SS G_CDS: 2.07 Total: 6.49 kcal Total: -26.06 0.10 -25.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13422196.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.898 kcal (2) G-P(sol) polarization free energy of solvation -26.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds