Wall clock time and date at job start Sun Mar 7 2021 04:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.46987 * 2 1 4 4 C 1.50698 * 109.46990 * 240.00455 * 2 1 3 5 5 C 1.32689 * 124.68389 * 299.99425 * 4 2 1 6 6 C 1.44505 * 113.09933 * 180.02562 * 5 4 2 7 7 C 1.47048 * 123.49248 * 179.73063 * 6 5 4 8 8 O 1.21658 * 120.00153 * 180.02562 * 7 6 5 9 9 N 1.34779 * 119.99833 * 0.02562 * 7 6 5 10 10 C 1.46504 * 119.99652 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.84862 * 336.19335 * 10 9 7 12 12 C 1.53778 * 113.61427 * 107.50599 * 10 9 7 13 13 C 1.53774 * 87.08526 * 89.11371 * 12 10 9 14 14 H 1.09008 * 113.61518 * 270.88811 * 13 12 10 15 15 C 1.52997 * 113.69342 * 139.99104 * 13 12 10 16 16 N 1.46496 * 109.46857 * 87.46622 * 15 13 12 17 17 C 1.34430 * 126.82417 * 125.00420 * 16 15 13 18 18 N 1.30835 * 108.07689 * 179.97438 * 17 16 15 19 19 C 1.33235 * 109.82912 * 359.97438 * 18 17 16 20 20 N 1.30713 * 108.94838 * 359.74968 * 19 18 17 21 21 C 1.53781 * 113.60978 * 205.00133 * 10 9 7 22 22 C 1.36226 * 113.01858 * 0.02562 * 6 5 4 23 23 Cl 1.73592 * 124.60726 * 179.97438 * 22 6 5 24 24 S 1.70448 * 110.78291 * 359.97438 * 22 6 5 25 25 H 0.96704 * 114.00102 * 59.99894 * 1 2 3 26 26 H 1.08991 * 109.47091 * 119.99620 * 2 1 3 27 27 H 1.48507 * 109.99822 * 59.99809 * 3 2 1 28 28 H 1.48495 * 110.00479 * 181.31996 * 3 2 1 29 29 H 1.07998 * 123.45064 * 0.02763 * 5 4 2 30 30 H 0.96990 * 119.99892 * 359.97438 * 9 7 6 31 31 H 1.09001 * 113.61253 * 203.66466 * 12 10 9 32 32 H 1.08997 * 113.61232 * 334.55981 * 12 10 9 33 33 H 1.08999 * 109.46819 * 207.46662 * 15 13 12 34 34 H 1.08996 * 109.47207 * 327.46491 * 15 13 12 35 35 H 1.08000 * 125.95810 * 359.92128 * 17 16 15 36 36 H 1.07998 * 125.52481 * 179.97438 * 19 18 17 37 37 H 1.08998 * 113.61999 * 25.43267 * 21 10 9 38 38 H 1.08997 * 113.61318 * 156.33683 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2305 5 6 1.6687 -1.9755 -1.5321 6 6 2.2778 -2.4011 -2.7715 7 6 2.1403 -3.7589 -3.3189 8 8 2.6815 -4.0491 -4.3692 9 7 1.4146 -4.6820 -2.6572 10 6 1.2771 -6.0346 -3.2030 11 1 1.4272 -6.0729 -4.2820 12 6 2.0779 -7.0953 -2.4295 13 6 0.8361 -7.2706 -1.5397 14 1 0.8178 -6.6021 -0.6788 15 6 0.5468 -8.7262 -1.1677 16 7 1.2910 -9.0777 0.0442 17 6 0.7844 -9.5798 1.1836 18 7 1.7719 -9.7569 2.0235 19 6 2.9186 -9.3815 1.4585 20 7 2.6765 -8.9634 0.2440 21 6 0.0074 -6.7628 -2.7315 22 6 2.9980 -1.4159 -3.3769 23 17 3.8531 -1.5993 -4.8764 24 16 2.9452 0.0212 -2.4620 25 1 -0.3933 0.4417 -0.7651 26 1 1.7923 -0.5137 0.8899 27 1 1.5614 2.4679 1.2085 28 1 3.5345 1.7705 -0.0321 29 1 1.0619 -2.6211 -0.9145 30 1 0.9834 -4.4507 -1.8198 31 1 2.3189 -7.9781 -3.0216 32 1 2.9407 -6.6909 -1.9003 33 1 -0.5210 -8.8496 -0.9870 34 1 0.8546 -9.3782 -1.9851 35 1 -0.2562 -9.7981 1.3730 36 1 3.8910 -9.4201 1.9268 37 1 -0.8014 -6.0902 -2.4460 38 1 -0.3177 -7.5548 -3.4061 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_13431040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:41:26 Heat of formation + Delta-G solvation = 91.176293 kcal Electronic energy + Delta-G solvation = -25922.984296 eV Core-core repulsion = 21923.141865 eV Total energy + Delta-G solvation = -3999.842430 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 355.054 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.97228 -41.48876 -39.91856 -38.78710 -37.98984 -36.96859 -35.41859 -33.84707 -32.14984 -31.67684 -29.19001 -26.97243 -26.72193 -26.15979 -24.22544 -22.85110 -22.38557 -22.33850 -20.92762 -20.33493 -19.46886 -18.28971 -17.95402 -17.76387 -17.07282 -16.77255 -16.46019 -16.25137 -15.99220 -15.86936 -15.72914 -15.27878 -15.20456 -14.85357 -14.68805 -14.43437 -14.35423 -14.08915 -13.99392 -13.46991 -13.11711 -12.94902 -12.81671 -12.62510 -12.42588 -12.24478 -12.13195 -11.90154 -11.72198 -11.26510 -11.01584 -10.96338 -10.78377 -10.62503 -10.55090 -10.19708 -9.92496 -9.68461 -5.14945 -0.67376 -0.23368 0.43902 0.67310 0.72039 1.00527 1.16609 1.47266 1.55599 1.88442 2.01907 2.06744 2.12059 3.24251 3.31575 3.45761 3.54446 3.56668 3.65413 3.74574 3.80864 3.84950 3.97799 4.12868 4.22850 4.31895 4.41898 4.45442 4.59176 4.67586 4.73656 4.76528 4.84883 4.92208 4.98941 5.04029 5.14138 5.33602 5.46516 5.54973 5.96824 6.38704 6.68462 7.08659 7.14857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.020 4.020 3 Si 0.713 3.287 4 C -0.228 4.228 5 C -0.069 4.069 6 C -0.168 4.168 7 C 0.572 3.428 8 O -0.558 6.558 9 N -0.693 5.693 10 C 0.110 3.890 11 H 0.088 0.912 12 C -0.138 4.138 13 C -0.110 4.110 14 H 0.089 0.911 15 C 0.130 3.870 16 N -0.377 5.377 17 C 0.256 3.744 18 N -0.586 5.586 19 C 0.182 3.818 20 N -0.344 5.344 21 C -0.113 4.113 22 C -0.139 4.139 23 Cl 0.004 6.996 24 S 0.268 5.732 25 H 0.399 0.601 26 H 0.132 0.868 27 H -0.265 1.265 28 H -0.261 1.261 29 H 0.177 0.823 30 H 0.412 0.588 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.145 0.855 34 H 0.095 0.905 35 H 0.259 0.741 36 H 0.227 0.773 37 H 0.095 0.905 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 2.427 1.098 8.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.133 4.133 3 Si 0.616 3.384 4 C -0.345 4.345 5 C -0.098 4.098 6 C -0.188 4.188 7 C 0.358 3.642 8 O -0.438 6.438 9 N -0.345 5.345 10 C 0.005 3.995 11 H 0.106 0.894 12 C -0.177 4.177 13 C -0.129 4.129 14 H 0.107 0.893 15 C 0.010 3.990 16 N -0.168 5.168 17 C -0.040 4.040 18 N -0.314 5.314 19 C -0.120 4.120 20 N -0.173 5.173 21 C -0.151 4.151 22 C -0.286 4.286 23 Cl 0.033 6.967 24 S 0.533 5.467 25 H 0.250 0.750 26 H 0.149 0.851 27 H -0.190 1.190 28 H -0.187 1.187 29 H 0.194 0.806 30 H 0.249 0.751 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.162 0.838 34 H 0.114 0.886 35 H 0.275 0.725 36 H 0.244 0.756 37 H 0.114 0.886 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.874 4.076 0.736 7.187 hybrid contribution -0.159 -1.989 0.367 2.029 sum -6.033 2.087 1.102 6.478 Atomic orbital electron populations 1.86514 1.16007 1.81985 1.50511 1.24440 0.85623 1.08880 0.94389 0.94299 0.79814 0.75838 0.88454 1.24963 1.07204 0.99178 1.03187 1.21082 0.99432 0.95449 0.93802 1.20321 1.05147 0.94813 0.98508 1.17697 0.78505 0.84267 0.83729 1.90858 1.47946 1.81054 1.23927 1.45385 1.52096 1.10652 1.26319 1.21935 0.98491 0.80580 0.98525 0.89416 1.23390 0.97094 0.99067 0.98118 1.22769 0.96955 0.95433 0.97736 0.89266 1.22262 0.97107 0.96014 0.83617 1.50777 1.04679 1.47031 1.14323 1.26910 1.01894 0.93230 0.81960 1.70541 0.99309 1.27331 1.34187 1.26407 0.99472 0.96541 0.89622 1.78026 0.93239 1.26271 1.19720 1.23283 0.95423 1.00268 0.96167 1.25806 1.03565 1.02559 0.96629 1.98426 1.73765 1.97278 1.27251 1.83233 1.46101 1.07008 1.10326 0.75044 0.85111 1.18966 1.18682 0.80614 0.75066 0.89049 0.93596 0.83762 0.88640 0.72497 0.75635 0.88600 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 3.40 12.85 -148.98 -1.91 1.48 16 2 C -0.02 0.12 2.95 71.24 0.21 0.33 16 3 Si 0.71 -4.04 30.90 68.60 2.12 -1.92 16 4 C -0.23 0.96 5.68 24.51 0.14 1.10 16 5 C -0.07 0.22 9.71 22.70 0.22 0.44 16 6 C -0.17 -0.53 5.98 -19.84 -0.12 -0.65 16 7 C 0.57 3.67 7.79 86.55 0.67 4.35 16 8 O -0.56 -8.00 14.51 -4.22 -0.06 -8.07 16 9 N -0.69 0.49 5.24 -443.63 -2.33 -1.84 16 10 C 0.11 -0.18 4.32 45.52 0.20 0.01 16 11 H 0.09 0.25 7.46 -2.38 -0.02 0.24 16 12 C -0.14 0.11 7.43 31.12 0.23 0.34 16 13 C -0.11 0.78 3.73 -10.27 -0.04 0.74 16 14 H 0.09 -0.49 8.14 -2.38 -0.02 -0.51 16 15 C 0.13 -1.14 6.39 86.38 0.55 -0.59 16 16 N -0.38 0.40 3.69 -352.08 -1.30 -0.90 16 17 C 0.26 -0.46 12.63 180.36 2.28 1.82 16 18 N -0.59 -3.32 11.19 -204.01 -2.28 -5.60 16 19 C 0.18 1.01 13.03 180.77 2.36 3.36 16 20 N -0.34 -2.05 12.58 -61.25 -0.77 -2.82 16 21 C -0.11 1.11 7.39 31.12 0.23 1.34 16 22 C -0.14 -0.60 6.87 67.35 0.46 -0.13 16 23 Cl 0.00 0.03 27.20 -2.72 -0.07 -0.04 16 24 S 0.27 -0.58 20.17 -56.49 -1.14 -1.71 16 25 H 0.40 -5.47 8.70 -74.05 -0.64 -6.12 16 26 H 0.13 -0.84 7.96 -2.39 -0.02 -0.86 16 27 H -0.26 -0.17 7.11 99.48 0.71 0.53 16 28 H -0.26 0.26 7.11 99.48 0.71 0.97 16 29 H 0.18 -1.38 7.10 -2.91 -0.02 -1.40 16 30 H 0.41 -2.55 7.24 -92.72 -0.67 -3.23 16 31 H 0.09 -0.05 7.90 -2.39 -0.02 -0.07 16 32 H 0.05 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.14 -2.38 8.09 -2.39 -0.02 -2.40 16 34 H 0.10 -0.83 7.85 -2.39 -0.02 -0.85 16 35 H 0.26 -3.17 8.06 -2.91 -0.02 -3.19 16 36 H 0.23 0.09 8.06 -2.91 -0.02 0.07 16 37 H 0.10 -1.14 8.14 -2.39 -0.02 -1.16 16 38 H 0.12 -1.54 8.10 -2.39 -0.02 -1.56 16 Total: 0.00 -27.79 357.38 -0.49 -28.28 By element: Atomic # 1 Polarization: -19.17 SS G_CDS: -0.14 Total: -19.31 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 7.39 Total: 12.45 kcal Atomic # 7 Polarization: -4.49 SS G_CDS: -6.68 Total: -11.16 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -1.98 Total: -6.58 kcal Atomic # 14 Polarization: -4.04 SS G_CDS: 2.12 Total: -1.92 kcal Atomic # 16 Polarization: -0.58 SS G_CDS: -1.14 Total: -1.71 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.07 Total: -0.04 kcal Total: -27.79 -0.49 -28.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13431040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.460 kcal (2) G-P(sol) polarization free energy of solvation -27.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds