Wall clock time and date at job start Sun Mar 7 2021 04:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37878 * 126.45846 * 2 1 4 4 C 1.46679 * 126.22960 * 359.97438 * 3 2 1 5 5 O 1.21694 * 119.99955 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99598 * 179.97438 * 4 3 2 7 7 C 1.46507 * 119.99876 * 180.02562 * 6 4 3 8 8 H 1.09002 * 112.84461 * 23.81496 * 7 6 4 9 9 C 1.53786 * 113.61298 * 155.00254 * 7 6 4 10 10 C 1.53787 * 87.07742 * 89.20185 * 9 7 6 11 11 H 1.08990 * 113.61651 * 270.79932 * 10 9 7 12 12 C 1.53004 * 113.60948 * 139.98068 * 10 9 7 13 13 N 1.46504 * 109.46764 * 175.00417 * 12 10 9 14 14 C 1.34424 * 126.82251 * 124.97843 * 13 12 10 15 15 N 1.30835 * 108.07632 * 179.97438 * 14 13 12 16 16 C 1.33244 * 109.82681 * 359.97438 * 15 14 13 17 17 N 1.30712 * 108.94650 * 0.02562 * 16 15 14 18 18 C 1.53770 * 113.69329 * 252.53983 * 7 6 4 19 19 N 1.37649 * 107.53507 * 180.25706 * 3 2 1 20 20 C 1.35538 * 108.64457 * 359.62621 * 19 3 2 21 21 C 1.50693 * 125.56624 * 180.18673 * 20 19 3 22 22 O 1.42901 * 109.46867 * 300.24801 * 21 20 19 23 23 Si 1.86300 * 109.47191 * 180.24887 * 21 20 19 24 24 C 1.35456 * 108.86820 * 0.37405 * 20 19 3 25 25 H 1.09005 * 109.46871 * 90.00281 * 1 2 3 26 26 H 1.08997 * 109.47746 * 209.99869 * 1 2 3 27 27 H 1.09002 * 109.47637 * 330.01047 * 1 2 3 28 28 H 0.96999 * 120.00622 * 0.02562 * 6 4 3 29 29 H 1.08998 * 113.61666 * 334.65676 * 9 7 6 30 30 H 1.08999 * 113.69217 * 203.76122 * 9 7 6 31 31 H 1.08996 * 109.47634 * 55.00128 * 12 10 9 32 32 H 1.09002 * 109.46960 * 294.99564 * 12 10 9 33 33 H 1.08003 * 125.96766 * 0.02562 * 14 13 12 34 34 H 1.07994 * 125.52303 * 179.97438 * 16 15 14 35 35 H 1.09000 * 113.61649 * 156.32137 * 18 7 6 36 36 H 1.09005 * 113.61536 * 25.42350 * 18 7 6 37 37 H 0.96992 * 125.68108 * 179.73914 * 19 3 2 38 38 H 1.09001 * 109.47382 * 60.24434 * 21 20 19 39 39 H 0.96703 * 113.99884 * 299.99870 * 22 21 20 40 40 H 1.48497 * 110.00093 * 179.97438 * 23 21 20 41 41 H 1.48496 * 109.99882 * 301.31447 * 23 21 20 42 42 H 1.07998 * 126.06690 * 179.74772 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3262 1.1089 0.0000 4 6 1.8898 2.5093 -0.0005 5 8 0.7025 2.7766 -0.0006 6 7 2.8036 3.4999 0.0001 7 6 2.3677 4.8986 0.0001 8 1 1.3642 5.0291 0.4053 9 6 3.4034 5.8666 0.5962 10 6 3.9841 5.9941 -0.8221 11 1 4.7518 5.2542 -1.0478 12 6 4.4071 7.4190 -1.1852 13 7 5.0530 7.4164 -2.5002 14 6 4.7109 8.1589 -3.5673 15 7 5.5299 7.8665 -4.5447 16 6 6.4048 6.9461 -4.1412 17 7 6.1532 6.6384 -2.8960 18 6 2.5878 5.6144 -1.3429 19 7 3.6283 0.6625 -0.0059 20 6 3.6218 -0.6928 -0.0011 21 6 4.8433 -1.5752 -0.0010 22 8 5.6239 -1.3081 -1.1678 23 14 4.3182 -3.3627 -0.0010 24 6 2.3379 -1.1247 -0.0006 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8901 0.5137 28 1 3.7499 3.2868 0.0005 29 1 4.0837 5.3955 1.3057 30 1 2.9704 6.7921 0.9756 31 1 5.1069 7.7920 -0.4374 32 1 3.5281 8.0629 -1.2135 33 1 3.9017 8.8730 -3.6100 34 1 7.1934 6.5224 -4.7454 35 1 1.9305 6.4707 -1.4942 36 1 2.6096 4.9399 -2.1989 37 1 4.4190 1.2243 -0.0108 38 1 5.4387 -1.3715 0.8890 39 1 5.1564 -1.4681 -1.9990 40 1 5.5138 -4.2433 -0.0016 41 1 3.4791 -3.6455 1.1910 42 1 2.0136 -2.1548 -0.0011 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_13940406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:41:33 Heat of formation + Delta-G solvation = 96.548218 kcal Electronic energy + Delta-G solvation = -26117.060739 eV Core-core repulsion = 22295.361410 eV Total energy + Delta-G solvation = -3821.699330 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.00719 -42.65988 -41.10704 -39.38673 -37.73114 -35.55407 -34.20882 -33.39069 -32.17973 -31.64973 -29.19459 -28.20807 -26.96032 -26.77943 -24.64378 -23.07313 -22.86154 -22.38633 -21.62670 -20.62614 -20.16918 -19.61268 -18.36819 -18.05366 -17.25134 -16.85972 -16.75671 -16.41914 -16.03232 -15.99438 -15.66227 -15.42122 -15.21198 -15.06108 -14.94089 -14.66159 -14.38786 -13.98315 -13.82009 -13.64561 -13.57385 -13.51401 -13.31572 -13.00427 -12.81546 -12.21139 -12.18101 -12.02852 -11.79458 -11.48626 -11.19659 -10.98639 -10.80591 -10.70594 -10.54239 -10.26483 -9.86774 -9.24030 -4.93225 0.24414 0.68329 1.20075 1.43056 1.48412 1.70117 1.86855 1.94930 1.99558 2.17403 2.18452 3.33051 3.42326 3.43074 3.43551 3.52435 3.52766 3.69520 3.77547 3.90272 4.09668 4.13880 4.15491 4.18851 4.38260 4.46126 4.48998 4.62078 4.67664 4.70122 4.75178 4.78055 4.88508 4.90851 4.96137 5.06898 5.13543 5.29209 5.31171 5.44195 5.45604 5.59739 5.81387 5.92878 6.23103 6.39382 6.62349 6.99243 7.11692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.083 4.083 3 C -0.074 4.074 4 C 0.590 3.410 5 O -0.558 6.558 6 N -0.705 5.705 7 C 0.112 3.888 8 H 0.096 0.904 9 C -0.118 4.118 10 C -0.115 4.115 11 H 0.084 0.916 12 C 0.132 3.868 13 N -0.376 5.376 14 C 0.256 3.744 15 N -0.586 5.586 16 C 0.186 3.814 17 N -0.349 5.349 18 C -0.142 4.142 19 N -0.515 5.515 20 C 0.034 3.966 21 C -0.057 4.057 22 O -0.555 6.555 23 Si 0.804 3.196 24 C -0.208 4.208 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.404 0.596 29 H 0.082 0.918 30 H 0.127 0.873 31 H 0.100 0.900 32 H 0.140 0.860 33 H 0.257 0.743 34 H 0.231 0.769 35 H 0.113 0.887 36 H 0.046 0.954 37 H 0.425 0.575 38 H 0.116 0.884 39 H 0.398 0.602 40 H -0.294 1.294 41 H -0.283 1.283 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.009 1.151 1.358 1.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.187 4.187 4 C 0.379 3.621 5 O -0.437 6.437 6 N -0.356 5.356 7 C 0.007 3.993 8 H 0.114 0.886 9 C -0.157 4.157 10 C -0.134 4.134 11 H 0.102 0.898 12 C 0.011 3.989 13 N -0.167 5.167 14 C -0.040 4.040 15 N -0.314 5.314 16 C -0.117 4.117 17 N -0.177 5.177 18 C -0.181 4.181 19 N -0.112 5.112 20 C -0.085 4.085 21 C -0.166 4.166 22 O -0.363 6.363 23 Si 0.708 3.292 24 C -0.232 4.232 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.240 0.760 29 H 0.101 0.899 30 H 0.145 0.855 31 H 0.118 0.882 32 H 0.157 0.843 33 H 0.272 0.728 34 H 0.247 0.753 35 H 0.132 0.868 36 H 0.065 0.935 37 H 0.265 0.735 38 H 0.134 0.866 39 H 0.249 0.751 40 H -0.221 1.221 41 H -0.209 1.209 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.096 0.542 2.398 2.461 hybrid contribution 0.987 0.754 0.256 1.268 sum 1.083 1.296 2.654 3.146 Atomic orbital electron populations 1.20342 0.89001 1.02868 1.02506 1.20192 0.96395 0.91213 1.01428 1.20165 0.84471 0.93186 1.20876 1.17185 0.85618 0.83666 0.75630 1.90813 1.17375 1.83711 1.51810 1.45492 1.09358 1.05676 1.75033 1.21922 0.99949 0.79593 0.97874 0.88638 1.23319 0.96889 1.00336 0.95121 1.22809 0.96688 0.96357 0.97590 0.89814 1.22258 0.98787 0.98503 0.79312 1.50738 1.22958 1.29765 1.13223 1.26862 0.99159 0.95980 0.82046 1.70550 1.09199 1.19524 1.32088 1.26435 0.99418 0.94571 0.91262 1.77921 1.04945 1.19000 1.15862 1.23544 0.96908 1.01062 0.96585 1.41825 1.06790 1.06812 1.55810 1.21324 0.97131 0.83318 1.06705 1.25099 0.90732 1.09236 0.91540 1.86478 1.42046 1.91334 1.16427 0.92945 0.79107 0.70332 0.86852 1.20846 0.90745 0.99605 1.11990 0.91114 0.90213 0.92085 0.76007 0.89914 0.85533 0.88197 0.84251 0.72753 0.75304 0.86838 0.93539 0.73542 0.86645 0.75134 1.22142 1.20935 0.81446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.42 9.83 71.23 0.70 0.28 16 2 C -0.08 -0.42 6.21 -19.57 -0.12 -0.54 16 3 C -0.07 -0.32 7.06 40.35 0.28 -0.04 16 4 C 0.59 3.61 7.79 86.45 0.67 4.28 16 5 O -0.56 -7.28 14.40 -4.33 -0.06 -7.34 16 6 N -0.71 0.58 5.26 -444.00 -2.34 -1.76 16 7 C 0.11 -0.34 4.32 45.51 0.20 -0.14 16 8 H 0.10 0.05 7.46 -2.39 -0.02 0.03 16 9 C -0.12 1.10 7.39 31.12 0.23 1.33 16 10 C -0.12 0.80 3.76 -10.26 -0.04 0.76 16 11 H 0.08 -0.21 8.00 -2.39 -0.02 -0.23 16 12 C 0.13 -1.15 6.39 86.38 0.55 -0.60 16 13 N -0.38 0.40 3.69 -352.05 -1.30 -0.90 16 14 C 0.26 -0.32 12.63 180.36 2.28 1.96 16 15 N -0.59 -3.38 11.19 -204.00 -2.28 -5.66 16 16 C 0.19 0.91 13.03 180.76 2.36 3.27 16 17 N -0.35 -1.79 12.45 -61.25 -0.76 -2.56 16 18 C -0.14 0.63 7.43 31.12 0.23 0.87 16 19 N -0.52 0.45 5.99 -171.93 -1.03 -0.58 16 20 C 0.03 -0.04 6.47 41.34 0.27 0.23 16 21 C -0.06 0.20 3.08 71.23 0.22 0.42 16 22 O -0.56 1.74 12.88 -148.98 -1.92 -0.18 16 23 Si 0.80 -3.66 30.54 68.60 2.10 -1.56 16 24 C -0.21 -0.12 9.27 22.01 0.20 0.08 16 25 H 0.07 0.29 8.14 -2.38 -0.02 0.27 16 26 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.06 0.54 6.48 -2.39 -0.02 0.52 16 28 H 0.40 -2.07 7.83 -92.71 -0.73 -2.79 16 29 H 0.08 -0.76 8.14 -2.39 -0.02 -0.78 16 30 H 0.13 -1.70 8.10 -2.39 -0.02 -1.72 16 31 H 0.10 -0.97 8.14 -2.39 -0.02 -0.99 16 32 H 0.14 -2.17 7.79 -2.39 -0.02 -2.19 16 33 H 0.26 -2.88 8.06 -2.91 -0.02 -2.90 16 34 H 0.23 -0.16 8.06 -2.91 -0.02 -0.18 16 35 H 0.11 -0.92 7.90 -2.39 -0.02 -0.93 16 36 H 0.05 0.07 8.14 -2.38 -0.02 0.05 16 37 H 0.43 -2.25 8.19 -92.71 -0.76 -3.01 16 38 H 0.12 -0.40 7.96 -2.39 -0.02 -0.42 16 39 H 0.40 -4.01 8.70 -74.05 -0.64 -4.66 16 40 H -0.29 -0.71 7.11 99.48 0.71 -0.01 16 41 H -0.28 -0.20 7.11 99.48 0.71 0.51 16 42 H 0.17 -0.65 6.17 -2.91 -0.02 -0.66 16 Total: 0.00 -27.83 356.67 -0.57 -28.40 By element: Atomic # 1 Polarization: -19.02 SS G_CDS: -1.01 Total: -20.03 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 8.03 Total: 12.17 kcal Atomic # 7 Polarization: -3.75 SS G_CDS: -7.71 Total: -11.46 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -1.98 Total: -7.52 kcal Atomic # 14 Polarization: -3.66 SS G_CDS: 2.10 Total: -1.56 kcal Total: -27.83 -0.57 -28.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_13940406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.949 kcal (2) G-P(sol) polarization free energy of solvation -27.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds