Wall clock time and date at job start Sun Mar 7 2021 04:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50702 * 109.47242 * 120.00115 * 2 1 3 5 5 C 1.34850 * 125.88961 * 245.02400 * 4 2 1 6 6 C 1.40893 * 107.41607 * 179.97438 * 5 4 2 7 7 C 1.34851 * 107.41688 * 0.02562 * 6 5 4 8 8 C 1.50700 * 125.88856 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46901 * 84.98103 * 8 7 6 10 10 O 1.21284 * 119.99950 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99832 * 180.02562 * 9 8 7 12 12 C 1.46500 * 119.99797 * 179.97438 * 11 9 8 13 13 H 1.09006 * 112.84813 * 336.19703 * 12 11 9 14 14 C 1.53778 * 113.61681 * 107.49959 * 12 11 9 15 15 C 1.53777 * 87.07879 * 89.11610 * 14 12 11 16 16 H 1.09004 * 113.61589 * 270.88205 * 15 14 12 17 17 C 1.52999 * 113.69098 * 139.99720 * 15 14 12 18 18 N 1.46500 * 109.47779 * 87.45985 * 17 15 14 19 19 C 1.34424 * 126.82460 * 124.70415 * 18 17 15 20 20 N 1.30836 * 108.07752 * 179.90085 * 19 18 17 21 21 C 1.33236 * 109.82996 * 0.38534 * 20 19 18 22 22 N 1.30714 * 108.94653 * 359.76358 * 21 20 19 23 23 C 1.53778 * 113.61578 * 205.00032 * 12 11 9 24 24 N 1.36342 * 125.89041 * 64.71339 * 4 2 1 25 25 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 26 26 H 1.09000 * 109.47224 * 239.99764 * 2 1 3 27 27 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 28 28 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 29 29 H 1.07999 * 126.29153 * 0.02562 * 5 4 2 30 30 H 1.07999 * 126.29068 * 180.02562 * 6 5 4 31 31 H 1.09002 * 109.46981 * 204.97791 * 8 7 6 32 32 H 1.08999 * 109.47863 * 324.98005 * 8 7 6 33 33 H 0.96988 * 120.00221 * 359.97438 * 11 9 8 34 34 H 1.08999 * 113.61479 * 203.66535 * 14 12 11 35 35 H 1.09000 * 113.61471 * 334.56753 * 14 12 11 36 36 H 1.08998 * 109.47255 * 207.46383 * 17 15 14 37 37 H 1.09006 * 109.46771 * 327.46287 * 17 15 14 38 38 H 1.08003 * 125.96201 * 0.05415 * 19 18 17 39 39 H 1.07997 * 125.52613 * 179.79784 * 21 20 19 40 40 H 1.08996 * 113.61490 * 25.42728 * 23 12 11 41 41 H 1.08994 * 113.61568 * 156.33608 * 23 12 11 42 42 H 0.96997 * 125.63709 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6297 -0.1486 2.2379 6 6 2.8970 -1.1603 3.1813 7 6 2.3521 -2.3020 2.7142 8 6 2.3922 -3.6443 3.3979 9 6 1.2597 -3.7378 4.3878 10 8 0.4957 -2.8059 4.5249 11 7 1.0966 -4.8566 5.1214 12 6 -0.0039 -4.9473 6.0841 13 1 -0.3525 -3.9712 6.4217 14 6 -1.1363 -5.8875 5.6386 15 6 -0.3634 -7.0201 6.3347 16 1 0.3571 -7.5194 5.6869 17 6 -1.2603 -8.0010 7.0926 18 7 -1.7084 -9.0571 6.1816 19 6 -1.5604 -10.3825 6.3497 20 7 -2.0955 -10.9848 5.3188 21 6 -2.5854 -10.0809 4.4714 22 7 -2.3725 -8.8857 4.9559 23 6 0.2606 -5.9373 7.2308 24 7 1.7529 -2.0308 1.5199 25 1 -0.3934 0.4417 -0.7651 26 1 1.7923 -0.5139 -0.8900 27 1 1.5879 2.4585 -1.2243 28 1 1.5615 2.4679 1.2085 29 1 2.9285 0.8868 2.3090 30 1 3.4386 -1.0430 4.1083 31 1 2.2904 -4.4343 2.6537 32 1 3.3419 -3.7578 3.9206 33 1 1.7078 -5.6017 5.0120 34 1 -2.0969 -5.6647 6.1030 35 1 -1.2052 -6.0062 4.5573 36 1 -0.6996 -8.4446 7.9154 37 1 -2.1266 -7.4702 7.4877 38 1 -1.0851 -10.8660 7.1904 39 1 -3.0791 -10.3002 3.5362 40 1 1.3194 -6.0963 7.4348 41 1 -0.3182 -5.7282 8.1304 42 1 1.2803 -2.6719 0.9663 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_14644196.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:41:37 Heat of formation + Delta-G solvation = 99.651920 kcal Electronic energy + Delta-G solvation = -25541.479637 eV Core-core repulsion = 21719.914894 eV Total energy + Delta-G solvation = -3821.564743 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.98229 -42.35109 -41.19797 -39.46643 -37.87872 -35.40760 -34.04542 -32.97013 -32.15891 -31.96637 -29.77415 -28.77295 -26.73378 -25.40002 -24.38853 -22.86034 -22.46575 -22.21805 -21.36463 -21.03981 -20.33175 -18.66716 -18.49850 -18.15305 -18.03133 -16.98853 -16.78072 -16.37317 -16.14263 -15.98342 -15.55841 -15.31195 -15.13116 -14.99388 -14.76643 -14.64172 -14.36537 -14.05993 -14.00438 -13.67791 -13.48182 -13.36607 -13.13838 -12.95589 -12.80418 -12.47296 -12.19897 -11.97524 -11.73265 -11.27581 -11.05227 -10.97070 -10.79376 -10.63792 -10.56251 -10.09946 -9.82837 -8.98707 -4.90273 0.71029 1.01827 1.27656 1.45807 1.56145 1.60510 1.81134 1.97860 2.01118 2.25590 2.46714 3.30250 3.36969 3.46069 3.53763 3.63556 3.64768 3.75824 3.88972 3.96467 4.00663 4.11970 4.18223 4.22236 4.26488 4.43860 4.45673 4.57989 4.58530 4.68693 4.74464 4.78186 4.84601 4.98179 5.02416 5.15284 5.21350 5.27866 5.32933 5.45710 5.57758 5.95741 5.97806 6.10240 6.46932 6.51055 6.64633 7.13952 7.22448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.567 6.567 2 C -0.066 4.066 3 Si 0.795 3.205 4 C 0.018 3.982 5 C -0.204 4.204 6 C -0.198 4.198 7 C 0.032 3.968 8 C -0.065 4.065 9 C 0.510 3.490 10 O -0.579 6.579 11 N -0.700 5.700 12 C 0.108 3.892 13 H 0.078 0.922 14 C -0.139 4.139 15 C -0.107 4.107 16 H 0.093 0.907 17 C 0.130 3.870 18 N -0.378 5.378 19 C 0.257 3.743 20 N -0.585 5.585 21 C 0.183 3.817 22 N -0.345 5.345 23 C -0.113 4.113 24 N -0.539 5.539 25 H 0.396 0.604 26 H 0.096 0.904 27 H -0.277 1.277 28 H -0.307 1.307 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.150 0.850 33 H 0.417 0.583 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.145 0.855 37 H 0.092 0.908 38 H 0.260 0.740 39 H 0.228 0.772 40 H 0.098 0.902 41 H 0.115 0.885 42 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.197 -4.426 2.277 8.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.377 6.377 2 C -0.174 4.174 3 Si 0.699 3.301 4 C -0.096 4.096 5 C -0.229 4.229 6 C -0.222 4.222 7 C -0.082 4.082 8 C -0.105 4.105 9 C 0.298 3.702 10 O -0.458 6.458 11 N -0.353 5.353 12 C 0.003 3.997 13 H 0.096 0.904 14 C -0.178 4.178 15 C -0.126 4.126 16 H 0.112 0.888 17 C 0.009 3.991 18 N -0.168 5.168 19 C -0.039 4.039 20 N -0.313 5.313 21 C -0.120 4.120 22 N -0.174 5.174 23 C -0.152 4.152 24 N -0.134 5.134 25 H 0.247 0.753 26 H 0.114 0.886 27 H -0.204 1.204 28 H -0.235 1.235 29 H 0.166 0.834 30 H 0.163 0.837 31 H 0.145 0.855 32 H 0.167 0.833 33 H 0.254 0.746 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.163 0.837 37 H 0.111 0.889 38 H 0.275 0.725 39 H 0.244 0.756 40 H 0.117 0.883 41 H 0.133 0.867 42 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 6.246 -2.976 2.478 7.349 hybrid contribution -1.567 -0.596 -0.806 1.860 sum 4.679 -3.571 1.672 6.119 Atomic orbital electron populations 1.86581 1.19012 1.80889 1.51238 1.24765 0.83713 1.12490 0.96465 0.93539 0.90067 0.70298 0.76177 1.19910 1.05945 0.84392 0.99312 1.20885 1.06607 1.00129 0.95268 1.20848 1.07906 0.92139 1.01313 1.19928 1.02619 0.97102 0.88509 1.20255 0.99330 0.93507 0.97409 1.21119 0.85895 0.81749 0.81457 1.90772 1.47411 1.39434 1.68158 1.45538 1.31574 1.17856 1.40301 1.21864 0.88004 0.99105 0.90777 0.90412 1.23382 0.98032 0.96112 1.00302 1.22755 0.97615 0.94008 0.98228 0.88841 1.22264 0.99357 0.87274 0.90176 1.50775 1.42375 1.07748 1.15949 1.26918 0.96287 0.81621 0.99110 1.70545 1.19954 1.35591 1.05236 1.26416 0.98991 0.85560 1.01019 1.78028 1.18272 1.23886 0.97189 1.23263 1.03403 0.91970 0.96545 1.41881 1.43608 1.09356 1.18564 0.75298 0.88597 1.20405 1.23487 0.83441 0.83695 0.85518 0.83259 0.74563 0.89677 0.93515 0.83706 0.88935 0.72468 0.75587 0.88310 0.86666 0.74495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -3.43 12.86 -148.98 -1.92 -5.34 16 2 C -0.07 -0.18 3.07 71.24 0.22 0.04 16 3 Si 0.80 0.53 30.60 68.60 2.10 2.63 16 4 C 0.02 0.13 6.53 41.08 0.27 0.39 16 5 C -0.20 -1.63 9.37 22.14 0.21 -1.42 16 6 C -0.20 -1.44 10.76 22.14 0.24 -1.20 16 7 C 0.03 0.15 5.66 41.08 0.23 0.39 16 8 C -0.06 0.22 6.24 29.10 0.18 0.40 16 9 C 0.51 1.66 7.82 87.66 0.69 2.35 16 10 O -0.58 -8.84 15.63 -3.04 -0.05 -8.89 16 11 N -0.70 2.32 5.26 -440.03 -2.32 0.00 16 12 C 0.11 -0.20 4.32 45.52 0.20 0.00 16 13 H 0.08 0.33 7.46 -2.38 -0.02 0.31 16 14 C -0.14 0.10 7.43 31.12 0.23 0.34 16 15 C -0.11 0.81 3.72 -10.27 -0.04 0.77 16 16 H 0.09 -0.63 8.14 -2.38 -0.02 -0.65 16 17 C 0.13 -1.15 6.39 86.38 0.55 -0.60 16 18 N -0.38 0.52 3.69 -352.06 -1.30 -0.78 16 19 C 0.26 -0.57 12.63 180.36 2.28 1.71 16 20 N -0.59 -3.03 11.19 -204.01 -2.28 -5.31 16 21 C 0.18 0.92 13.03 180.77 2.36 3.27 16 22 N -0.35 -1.92 12.57 -61.25 -0.77 -2.69 16 23 C -0.11 1.13 7.39 31.12 0.23 1.36 16 24 N -0.54 -2.95 6.07 -171.12 -1.04 -3.99 16 25 H 0.40 -1.17 8.74 -74.06 -0.65 -1.81 16 26 H 0.10 -0.26 7.96 -2.39 -0.02 -0.28 16 27 H -0.28 -0.84 7.11 99.48 0.71 -0.14 16 28 H -0.31 -2.99 7.11 99.48 0.71 -2.28 16 29 H 0.15 0.74 6.24 -2.91 -0.02 0.72 16 30 H 0.15 0.62 8.06 -2.91 -0.02 0.60 16 31 H 0.13 -1.11 8.14 -2.39 -0.02 -1.13 16 32 H 0.15 -1.44 8.14 -2.39 -0.02 -1.46 16 33 H 0.42 -4.22 8.70 -92.72 -0.81 -5.03 16 34 H 0.08 0.03 7.90 -2.39 -0.02 0.01 16 35 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.15 -2.41 8.09 -2.39 -0.02 -2.43 16 37 H 0.09 -0.77 7.85 -2.38 -0.02 -0.79 16 38 H 0.26 -3.29 8.06 -2.91 -0.02 -3.31 16 39 H 0.23 -0.04 8.06 -2.91 -0.02 -0.06 16 40 H 0.10 -1.26 8.14 -2.39 -0.02 -1.27 16 41 H 0.12 -1.40 8.10 -2.39 -0.02 -1.42 16 42 H 0.42 0.73 8.96 -92.71 -0.83 -0.10 16 Total: 0.00 -35.97 361.36 -0.90 -36.87 By element: Atomic # 1 Polarization: -19.13 SS G_CDS: -1.17 Total: -20.30 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 7.84 Total: 7.80 kcal Atomic # 7 Polarization: -5.07 SS G_CDS: -7.71 Total: -12.78 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -1.96 Total: -14.23 kcal Atomic # 14 Polarization: 0.53 SS G_CDS: 2.10 Total: 2.63 kcal Total: -35.97 -0.90 -36.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_14644196.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.527 kcal (2) G-P(sol) polarization free energy of solvation -35.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds