Wall clock time and date at job start Sun Mar 7 2021 04:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86299 * 109.46787 * 2 1 4 4 C 1.50705 * 109.47048 * 119.99352 * 2 1 3 5 5 C 1.31117 * 118.54719 * 249.97695 * 4 2 1 6 6 N 1.38929 * 121.84550 * 179.61579 * 5 4 2 7 7 C 1.47022 * 118.88270 * 13.32609 * 6 5 4 8 8 C 1.53546 * 107.65921 * 316.32785 * 7 6 5 9 9 C 1.50200 * 118.54348 * 70.00786 * 4 2 1 10 10 C 1.50697 * 109.32985 * 320.28068 * 9 4 2 11 11 O 1.21276 * 120.00436 * 239.13699 * 10 9 4 12 12 N 1.34781 * 119.99496 * 59.14626 * 10 9 4 13 13 C 1.46506 * 119.99795 * 179.97438 * 12 10 9 14 14 H 1.08999 * 112.85156 * 23.80301 * 13 12 10 15 15 C 1.53776 * 113.61389 * 154.99378 * 13 12 10 16 16 C 1.53782 * 87.07943 * 89.11788 * 15 13 12 17 17 H 1.09003 * 113.61275 * 270.88394 * 16 15 13 18 18 C 1.52995 * 113.61840 * 140.06586 * 16 15 13 19 19 N 1.46497 * 109.47544 * 174.99928 * 18 16 15 20 20 C 1.34428 * 126.82323 * 125.00152 * 19 18 16 21 21 N 1.30830 * 108.07754 * 179.97438 * 20 19 18 22 22 C 1.33238 * 109.82951 * 359.97438 * 21 20 19 23 23 N 1.30715 * 108.94644 * 359.76073 * 22 21 20 24 24 C 1.53775 * 113.61551 * 252.49456 * 13 12 10 25 25 H 0.96700 * 114.00578 * 299.99964 * 1 2 3 26 26 H 1.09000 * 109.47381 * 239.99470 * 2 1 3 27 27 H 1.48506 * 109.99780 * 299.99533 * 3 2 1 28 28 H 1.48498 * 110.00483 * 61.31446 * 3 2 1 29 29 H 1.08000 * 119.07716 * 359.60433 * 5 4 2 30 30 H 0.97002 * 120.55198 * 193.34078 * 6 5 4 31 31 H 1.09008 * 109.82173 * 196.79138 * 7 6 5 32 32 H 1.09001 * 109.82549 * 75.87126 * 7 6 5 33 33 H 1.09005 * 109.62138 * 180.67366 * 8 7 6 34 34 H 1.08995 * 109.62222 * 301.23411 * 8 7 6 35 35 H 1.08996 * 109.19729 * 79.85521 * 9 4 2 36 36 H 0.96996 * 120.00141 * 359.97438 * 12 10 9 37 37 H 1.08995 * 113.61395 * 203.66506 * 15 13 12 38 38 H 1.08999 * 113.61686 * 334.57396 * 15 13 12 39 39 H 1.09007 * 109.47127 * 295.00199 * 18 16 15 40 40 H 1.09007 * 109.47425 * 54.99714 * 18 16 15 41 41 H 1.07999 * 125.96100 * 359.92595 * 20 19 18 42 42 H 1.08003 * 125.52572 * 179.97438 * 22 21 20 43 43 H 1.09002 * 113.61598 * 25.42976 * 24 13 12 44 44 H 1.08997 * 113.61549 * 156.33609 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.5120 -0.0027 2.1693 6 7 2.9931 -0.5856 3.3350 7 6 3.1185 -2.0492 3.3977 8 6 1.8464 -2.6523 2.7848 9 6 1.7452 -2.1976 1.3270 10 6 0.3896 -2.5670 0.7823 11 8 -0.4137 -3.1368 1.4901 12 7 0.0699 -2.2644 -0.4916 13 6 -1.2478 -2.6240 -1.0213 14 1 -2.0007 -2.7387 -0.2415 15 6 -1.7039 -1.7375 -2.1921 16 6 -0.9980 -2.7384 -3.1221 17 1 0.0508 -2.5020 -3.3023 18 6 -1.7711 -3.0290 -4.4099 19 7 -0.9676 -3.8939 -5.2773 20 6 -1.3357 -5.0765 -5.7999 21 7 -0.3400 -5.5315 -6.5161 22 6 0.6763 -4.6708 -6.4756 23 7 0.3378 -3.6492 -5.7337 24 6 -1.2119 -3.7912 -2.0218 25 1 -0.3934 0.4417 0.7650 26 1 1.7923 -0.5139 -0.8899 27 1 1.5613 2.4678 -1.2086 28 1 1.5877 2.4587 1.2241 29 1 2.6194 1.0632 2.0325 30 1 3.2418 -0.0363 4.0948 31 1 3.2155 -2.3677 4.4357 32 1 3.9910 -2.3701 2.8287 33 1 1.9006 -3.7403 2.8260 34 1 0.9736 -2.3054 3.3379 35 1 2.5175 -2.6942 0.7398 36 1 0.7122 -1.8085 -1.0576 37 1 -2.7857 -1.7087 -2.3224 38 1 -1.2500 -0.7465 -2.1922 39 1 -2.7085 -3.5291 -4.1659 40 1 -1.9827 -2.0925 -4.9260 41 1 -2.2872 -5.5661 -5.6532 42 1 1.6245 -4.7952 -6.9774 43 1 -0.3608 -4.4582 -1.8843 44 1 -2.1592 -4.3239 -2.1056 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_15608500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:41:44 Heat of formation + Delta-G solvation = 97.330463 kcal Electronic energy + Delta-G solvation = -27945.902991 eV Core-core repulsion = 24096.926103 eV Total energy + Delta-G solvation = -3848.976887 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.97858 -41.70474 -40.20143 -38.83439 -37.68004 -35.28510 -33.98968 -33.05770 -32.68421 -32.14976 -29.11588 -27.28624 -26.68659 -26.02655 -24.32046 -23.25966 -22.92172 -22.38284 -21.88498 -20.16575 -19.32530 -19.01482 -18.35784 -17.91992 -17.44312 -16.97599 -16.77896 -16.33116 -16.02711 -15.96269 -15.73312 -15.57369 -15.25364 -15.04937 -14.77361 -14.71150 -14.47433 -13.99674 -13.94233 -13.66439 -13.41301 -13.25410 -13.15470 -12.76730 -12.65687 -12.20730 -12.12019 -11.89433 -11.70019 -11.63214 -11.41951 -11.36064 -10.95705 -10.77475 -10.73301 -10.48135 -10.36509 -9.75891 -8.45281 -4.85974 0.71148 1.27123 1.40232 1.44982 1.60064 1.80277 2.01791 2.02144 2.33068 2.66019 3.41290 3.49347 3.50385 3.53125 3.55965 3.66015 3.80550 3.89455 3.96153 4.01652 4.16322 4.19237 4.21259 4.32706 4.37196 4.49308 4.53035 4.60759 4.65740 4.72585 4.74802 4.78778 4.82893 4.91507 5.02013 5.11595 5.20082 5.24903 5.26070 5.31927 5.44852 5.47857 5.72989 5.94735 6.30743 6.55370 6.68568 6.94751 7.14148 7.38114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.059 4.059 3 Si 0.752 3.248 4 C -0.291 4.291 5 C 0.157 3.843 6 N -0.745 5.745 7 C 0.123 3.877 8 C -0.117 4.117 9 C -0.038 4.038 10 C 0.530 3.470 11 O -0.597 6.597 12 N -0.676 5.676 13 C 0.123 3.877 14 H 0.078 0.922 15 C -0.117 4.117 16 C -0.112 4.112 17 H 0.084 0.916 18 C 0.133 3.867 19 N -0.376 5.376 20 C 0.255 3.745 21 N -0.585 5.585 22 C 0.186 3.814 23 N -0.347 5.347 24 C -0.145 4.145 25 H 0.373 0.627 26 H 0.115 0.885 27 H -0.310 1.310 28 H -0.289 1.289 29 H 0.147 0.853 30 H 0.413 0.587 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.105 0.895 36 H 0.407 0.593 37 H 0.113 0.887 38 H 0.080 0.920 39 H 0.136 0.864 40 H 0.098 0.902 41 H 0.255 0.745 42 H 0.233 0.767 43 H 0.046 0.954 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.377 3.287 1.803 4.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.170 4.170 3 Si 0.659 3.341 4 C -0.302 4.302 5 C 0.034 3.966 6 N -0.375 5.375 7 C -0.002 4.002 8 C -0.156 4.156 9 C -0.059 4.059 10 C 0.318 3.682 11 O -0.479 6.479 12 N -0.327 5.327 13 C 0.016 3.984 14 H 0.096 0.904 15 C -0.155 4.155 16 C -0.131 4.131 17 H 0.102 0.898 18 C 0.012 3.988 19 N -0.166 5.166 20 C -0.042 4.042 21 N -0.313 5.313 22 C -0.117 4.117 23 N -0.176 5.176 24 C -0.184 4.184 25 H 0.222 0.778 26 H 0.133 0.867 27 H -0.239 1.239 28 H -0.217 1.217 29 H 0.164 0.836 30 H 0.249 0.751 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.123 0.877 36 H 0.246 0.754 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.154 0.846 40 H 0.116 0.884 41 H 0.271 0.729 42 H 0.249 0.751 43 H 0.065 0.935 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.144 3.634 1.750 4.568 hybrid contribution -0.963 0.171 0.548 1.121 sum 1.181 3.806 2.298 4.600 Atomic orbital electron populations 1.86700 1.18490 1.79490 1.49566 1.24794 0.83721 1.10076 0.98394 0.94324 0.91067 0.73060 0.75610 1.20447 1.14433 0.93984 1.01342 1.20704 0.92016 0.97359 0.86517 1.44683 1.71236 1.06648 1.14980 1.21678 0.96233 0.79962 1.02314 1.21654 0.98819 1.00865 0.94299 1.19714 0.93699 0.94904 0.97631 1.20792 0.89373 0.76579 0.81492 1.90656 1.53068 1.44794 1.59333 1.45666 1.16148 1.58637 1.12275 1.21637 0.85911 0.95811 0.94998 0.90389 1.23221 1.02150 0.97929 0.92242 1.22764 1.00283 0.97721 0.92332 0.89788 1.22225 0.93008 0.95071 0.88448 1.50725 1.11103 1.17423 1.37355 1.26836 1.00799 0.85301 0.91221 1.70544 1.02032 1.32894 1.25832 1.26460 1.00259 0.87846 0.97091 1.77937 0.95562 1.25026 1.19075 1.23557 1.02605 0.96528 0.95681 0.77822 0.86706 1.23884 1.21705 0.83643 0.75142 0.88581 0.90777 0.90850 0.92953 0.87681 0.75390 0.86833 0.90093 0.84565 0.88429 0.72897 0.75122 0.93488 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.58 9.05 -148.98 -1.35 -0.77 16 2 C -0.06 0.24 1.73 71.24 0.12 0.36 16 3 Si 0.75 -3.16 29.95 68.60 2.05 -1.11 16 4 C -0.29 0.75 5.14 -16.76 -0.09 0.66 16 5 C 0.16 -0.68 9.62 83.41 0.80 0.13 16 6 N -0.75 3.97 5.83 -345.89 -2.02 1.96 16 7 C 0.12 -0.58 7.16 86.46 0.62 0.04 16 8 C -0.12 -0.16 4.91 30.79 0.15 -0.01 16 9 C -0.04 -0.03 2.75 -12.43 -0.03 -0.07 16 10 C 0.53 3.42 6.39 87.66 0.56 3.98 16 11 O -0.60 -9.17 15.40 -3.02 -0.05 -9.22 16 12 N -0.68 -1.23 2.91 -440.04 -1.28 -2.51 16 13 C 0.12 0.13 4.27 45.51 0.19 0.33 16 14 H 0.08 0.46 7.46 -2.39 -0.02 0.44 16 15 C -0.12 0.50 7.39 31.12 0.23 0.73 16 16 C -0.11 0.38 3.75 -10.27 -0.04 0.34 16 17 H 0.08 0.08 8.01 -2.39 -0.02 0.06 16 18 C 0.13 -0.77 6.39 86.38 0.55 -0.22 16 19 N -0.38 -0.33 3.69 -352.06 -1.30 -1.63 16 20 C 0.25 0.08 12.63 180.36 2.28 2.35 16 21 N -0.58 -3.99 11.19 -204.00 -2.28 -6.28 16 22 C 0.19 1.08 13.03 180.77 2.36 3.44 16 23 N -0.35 -2.27 12.46 -61.24 -0.76 -3.03 16 24 C -0.15 0.15 7.43 31.12 0.23 0.38 16 25 H 0.37 -0.99 8.70 -74.06 -0.64 -1.63 16 26 H 0.12 -0.70 6.39 -2.39 -0.02 -0.72 16 27 H -0.31 -1.38 7.11 99.48 0.71 -0.68 16 28 H -0.29 0.02 6.84 99.48 0.68 0.70 16 29 H 0.15 -1.05 4.30 -2.91 -0.01 -1.06 16 30 H 0.41 -3.68 8.96 -92.71 -0.83 -4.51 16 31 H 0.10 -0.69 8.14 -2.38 -0.02 -0.71 16 32 H 0.07 -0.46 8.14 -2.39 -0.02 -0.48 16 33 H 0.07 0.17 8.14 -2.38 -0.02 0.15 16 34 H 0.05 0.36 7.77 -2.39 -0.02 0.34 16 35 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 36 H 0.41 -0.39 5.54 -92.71 -0.51 -0.91 16 37 H 0.11 -0.90 8.10 -2.39 -0.02 -0.92 16 38 H 0.08 -0.20 7.77 -2.39 -0.02 -0.22 16 39 H 0.14 -1.68 7.80 -2.38 -0.02 -1.70 16 40 H 0.10 -0.64 8.14 -2.38 -0.02 -0.66 16 41 H 0.26 -2.43 8.06 -2.91 -0.02 -2.45 16 42 H 0.23 -0.05 8.06 -2.91 -0.02 -0.07 16 43 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 44 H 0.11 -0.45 7.90 -2.39 -0.02 -0.47 16 Total: 0.00 -25.70 350.68 0.03 -25.66 By element: Atomic # 1 Polarization: -14.59 SS G_CDS: -0.92 Total: -15.51 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 7.94 Total: 12.44 kcal Atomic # 7 Polarization: -3.85 SS G_CDS: -7.64 Total: -11.50 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: -1.39 Total: -9.98 kcal Atomic # 14 Polarization: -3.16 SS G_CDS: 2.05 Total: -1.11 kcal Total: -25.70 0.03 -25.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_15608500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.993 kcal (2) G-P(sol) polarization free energy of solvation -25.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds