Wall clock time and date at job start Sun Mar 7 2021 04:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86299 * 109.47168 * 2 1 4 4 C 1.50701 * 109.47145 * 119.99794 * 2 1 3 5 5 C 1.34492 * 125.49633 * 210.28760 * 4 2 1 6 6 C 1.46743 * 106.36957 * 180.12419 * 5 4 2 7 7 C 1.47266 * 126.97084 * 179.88378 * 6 5 4 8 8 O 1.21625 * 119.99617 * 179.68727 * 7 6 5 9 9 N 1.34766 * 120.00115 * 359.68729 * 7 6 5 10 10 C 1.46500 * 120.00277 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.84624 * 23.79715 * 10 9 7 12 12 C 1.53782 * 113.61918 * 155.00092 * 10 9 7 13 13 C 1.53781 * 87.08224 * 89.11528 * 12 10 9 14 14 H 1.09006 * 113.61315 * 270.80477 * 13 12 10 15 15 C 1.52997 * 113.61559 * 139.98357 * 13 12 10 16 16 N 1.46505 * 109.47212 * 174.99892 * 15 13 12 17 17 C 1.34430 * 126.82083 * 124.99774 * 16 15 13 18 18 N 1.30833 * 108.07734 * 179.97438 * 17 16 15 19 19 C 1.33243 * 109.82413 * 359.97438 * 18 17 16 20 20 N 1.30715 * 108.94993 * 359.75621 * 19 18 17 21 21 C 1.53782 * 113.61297 * 252.50012 * 10 9 7 22 22 C 1.36337 * 106.06007 * 359.62496 * 6 5 4 23 23 C 1.50998 * 126.79255 * 180.25664 * 22 6 5 24 24 C 1.53404 * 108.24583 * 164.27843 * 23 22 6 25 25 C 1.53160 * 109.04230 * 48.48029 * 24 23 22 26 26 C 1.53131 * 109.52144 * 290.41794 * 25 24 23 27 27 N 1.35213 * 108.66155 * 0.23773 * 22 6 5 28 28 H 0.96697 * 113.99741 * 300.00166 * 1 2 3 29 29 H 1.09002 * 109.46986 * 239.99822 * 2 1 3 30 30 H 1.48508 * 109.99961 * 299.99946 * 3 2 1 31 31 H 1.48497 * 109.99857 * 61.31650 * 3 2 1 32 32 H 1.08007 * 126.81746 * 0.02562 * 5 4 2 33 33 H 0.97002 * 120.00466 * 359.97438 * 9 7 6 34 34 H 1.09003 * 113.61213 * 334.56934 * 12 10 9 35 35 H 1.08992 * 113.69083 * 203.67515 * 12 10 9 36 36 H 1.09002 * 109.47153 * 54.99884 * 15 13 12 37 37 H 1.09001 * 109.46832 * 295.00075 * 15 13 12 38 38 H 1.08004 * 125.96151 * 359.93062 * 17 16 15 39 39 H 1.08001 * 125.52120 * 179.97438 * 19 18 17 40 40 H 1.08998 * 113.61542 * 156.33246 * 21 10 9 41 41 H 1.08998 * 113.61766 * 25.42955 * 21 10 9 42 42 H 1.09000 * 109.71040 * 283.98992 * 23 22 6 43 43 H 1.08999 * 109.70206 * 44.61518 * 23 22 6 44 44 H 1.08997 * 109.55361 * 288.60465 * 24 23 22 45 45 H 1.09005 * 109.60651 * 168.38690 * 24 23 22 46 46 H 1.08996 * 109.46005 * 170.40413 * 25 24 23 47 47 H 1.09000 * 109.46033 * 50.43318 * 25 24 23 48 48 H 1.08995 * 109.56682 * 291.17459 * 26 25 24 49 49 H 1.09001 * 109.65743 * 170.89085 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 3.0831 -0.4426 1.8713 6 6 3.1553 -1.3774 3.0002 7 6 4.2331 -1.4789 3.9985 8 8 4.1599 -2.3022 4.8908 9 7 5.3005 -0.6596 3.9234 10 6 6.3730 -0.7609 4.9162 11 1 6.4218 -1.7424 5.3879 12 6 7.7328 -0.2531 4.4083 13 6 7.3171 1.1359 4.9208 14 1 6.7784 1.7304 4.1828 15 6 8.4557 1.9085 5.5896 16 7 7.9953 3.2559 5.9343 17 6 8.0330 3.8345 7.1472 18 7 7.5304 5.0376 7.0388 19 6 7.1631 5.2620 5.7778 20 7 7.4329 4.2020 5.0621 21 6 6.3990 0.4071 5.9163 22 6 2.0193 -2.1289 2.9408 23 6 1.6152 -3.2335 3.8877 24 6 0.1221 -3.5196 3.6825 25 6 -0.1566 -3.6702 2.1841 26 6 -0.0053 -2.3104 1.4963 27 7 1.2885 -1.7251 1.8772 28 1 -0.3933 0.4417 0.7650 29 1 1.7924 -0.5139 -0.8900 30 1 1.5615 2.4679 -1.2086 31 1 1.5879 2.4585 1.2242 32 1 3.8113 0.3098 1.6065 33 1 5.3591 -0.0032 3.2116 34 1 7.8410 -0.3044 3.3248 35 1 8.5849 -0.6774 4.9393 36 1 9.3000 1.9775 4.9037 37 1 8.7653 1.3874 6.4956 38 1 8.4115 3.3845 8.0531 39 1 6.7182 6.1734 5.4066 40 1 6.8856 0.1627 6.8605 41 1 5.4305 0.8888 6.0504 42 1 2.1947 -4.1316 3.6737 43 1 1.7908 -2.9184 4.9162 44 1 -0.4659 -2.6931 4.0815 45 1 -0.1479 -4.4414 4.1980 46 1 -1.1717 -4.0396 2.0388 47 1 0.5521 -4.3766 1.7520 48 1 -0.8121 -1.6494 1.8127 49 1 -0.0428 -2.4403 0.4147 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_16915396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:41:48 Heat of formation + Delta-G solvation = 96.439138 kcal Electronic energy + Delta-G solvation = -32071.411448 eV Core-core repulsion = 27810.406010 eV Total energy + Delta-G solvation = -4261.005438 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.94333 -42.82143 -41.03191 -39.24207 -38.09387 -36.90800 -35.31239 -33.84658 -33.41336 -32.11528 -31.20136 -29.75173 -28.77558 -26.68656 -26.64064 -24.90515 -24.67349 -23.71484 -22.87825 -22.31740 -21.74320 -21.27858 -20.16618 -19.59713 -19.00240 -18.22703 -17.43399 -17.07932 -16.96992 -16.71762 -16.59639 -15.96238 -15.91694 -15.80471 -15.53589 -15.35416 -15.28714 -15.12952 -15.01065 -14.93851 -14.67470 -14.51805 -14.33122 -13.94137 -13.73099 -13.40347 -13.27040 -13.19097 -12.75979 -12.68974 -12.43802 -12.21532 -12.07443 -12.04320 -11.88647 -11.79546 -11.66682 -11.35420 -10.93604 -10.92833 -10.92519 -10.73878 -10.45044 -10.05338 -9.59384 -9.08102 -4.94715 0.68526 0.74591 1.01791 1.40987 1.50103 1.63251 1.74590 1.99266 2.05073 2.38034 2.50525 3.18242 3.43822 3.46214 3.52320 3.54258 3.55821 3.58362 3.65019 3.75080 3.78435 3.88479 4.00507 4.12960 4.20018 4.26519 4.27179 4.31197 4.36624 4.49239 4.56056 4.58595 4.59511 4.70293 4.74608 4.75382 4.78569 4.81202 4.88700 4.94301 4.97639 5.03337 5.10821 5.13344 5.17101 5.27714 5.35867 5.50422 5.66683 5.70870 5.98989 5.99289 6.18125 6.31680 6.64864 7.17552 7.34088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.052 4.052 3 Si 0.794 3.206 4 C -0.017 4.017 5 C -0.162 4.162 6 C -0.258 4.258 7 C 0.591 3.409 8 O -0.588 6.588 9 N -0.700 5.700 10 C 0.113 3.887 11 H 0.088 0.912 12 C -0.117 4.117 13 C -0.114 4.114 14 H 0.088 0.912 15 C 0.132 3.868 16 N -0.375 5.375 17 C 0.254 3.746 18 N -0.587 5.587 19 C 0.184 3.816 20 N -0.344 5.344 21 C -0.145 4.145 22 C 0.104 3.896 23 C -0.053 4.053 24 C -0.124 4.124 25 C -0.134 4.134 26 C 0.104 3.896 27 N -0.429 5.429 28 H 0.384 0.616 29 H 0.133 0.867 30 H -0.293 1.293 31 H -0.296 1.296 32 H 0.180 0.820 33 H 0.411 0.589 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.102 0.898 37 H 0.137 0.863 38 H 0.255 0.745 39 H 0.230 0.770 40 H 0.108 0.892 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.069 0.931 48 H 0.092 0.908 49 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.652 -2.290 -2.052 4.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.160 4.160 3 Si 0.697 3.303 4 C -0.125 4.125 5 C -0.186 4.186 6 C -0.268 4.268 7 C 0.382 3.618 8 O -0.470 6.470 9 N -0.350 5.350 10 C 0.007 3.993 11 H 0.106 0.894 12 C -0.155 4.155 13 C -0.133 4.133 14 H 0.107 0.893 15 C 0.011 3.989 16 N -0.165 5.165 17 C -0.042 4.042 18 N -0.315 5.315 19 C -0.119 4.119 20 N -0.173 5.173 21 C -0.184 4.184 22 C -0.015 4.015 23 C -0.091 4.091 24 C -0.161 4.161 25 C -0.172 4.172 26 C -0.016 4.016 27 N -0.105 5.105 28 H 0.233 0.767 29 H 0.150 0.850 30 H -0.220 1.220 31 H -0.222 1.222 32 H 0.197 0.803 33 H 0.248 0.752 34 H 0.106 0.894 35 H 0.141 0.859 36 H 0.120 0.880 37 H 0.155 0.845 38 H 0.271 0.729 39 H 0.247 0.753 40 H 0.126 0.874 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.108 0.892 46 H 0.126 0.874 47 H 0.088 0.912 48 H 0.110 0.890 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.009 -2.383 -2.661 4.098 hybrid contribution -1.225 0.155 0.418 1.304 sum 0.784 -2.228 -2.243 3.258 Atomic orbital electron populations 1.86565 1.18176 1.80043 1.50303 1.24976 0.83398 1.11354 0.96306 0.93546 0.90100 0.70335 0.76278 1.20971 0.96279 0.95554 0.99739 1.21973 0.98553 1.02432 0.95611 1.19993 0.98233 1.06053 1.02500 1.17539 0.81465 0.79666 0.83159 1.90732 1.79734 1.38853 1.37650 1.45350 1.20055 1.38235 1.31410 1.21848 0.87775 0.99292 0.90353 0.89367 1.23296 0.96180 0.93051 1.03017 1.22809 0.96328 0.95600 0.98541 0.89323 1.22269 0.97030 0.75603 1.03971 1.50752 1.45297 1.13950 1.06549 1.26824 0.95833 0.89457 0.92130 1.70539 1.21732 1.17728 1.21517 1.26427 0.98899 0.98891 0.87656 1.77923 1.20264 1.00731 1.18351 1.23551 0.99622 0.96594 0.98638 1.20577 0.91719 0.98229 0.90965 1.20436 0.96926 0.94623 0.97105 1.21699 0.94443 1.03451 0.96555 1.21927 1.04652 0.95410 0.95174 1.22270 0.82059 0.95499 1.01740 1.44043 1.18000 1.27235 1.21193 0.76654 0.84957 1.22033 1.22249 0.80338 0.75224 0.89435 0.85931 0.87991 0.84548 0.72925 0.75342 0.87350 0.93807 0.90023 0.90182 0.91479 0.89163 0.87387 0.91182 0.88995 0.88251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.66 10.68 -148.98 -1.59 -0.93 16 2 C -0.05 0.14 2.99 71.24 0.21 0.35 16 3 Si 0.79 -2.60 31.10 68.60 2.13 -0.46 16 4 C -0.02 -0.01 6.15 40.99 0.25 0.24 16 5 C -0.16 -0.09 9.08 23.64 0.21 0.12 16 6 C -0.26 -1.63 6.28 -19.12 -0.12 -1.75 16 7 C 0.59 4.92 7.81 86.62 0.68 5.60 16 8 O -0.59 -8.91 14.93 -4.11 -0.06 -8.97 16 9 N -0.70 -0.82 5.26 -443.46 -2.33 -3.15 16 10 C 0.11 -0.16 4.32 45.52 0.20 0.04 16 11 H 0.09 0.23 7.46 -2.39 -0.02 0.21 16 12 C -0.12 0.99 7.39 31.12 0.23 1.22 16 13 C -0.11 0.71 3.76 -10.27 -0.04 0.67 16 14 H 0.09 -0.20 8.01 -2.38 -0.02 -0.21 16 15 C 0.13 -1.08 6.39 86.38 0.55 -0.53 16 16 N -0.38 0.23 3.69 -352.05 -1.30 -1.07 16 17 C 0.25 -0.16 12.63 180.36 2.28 2.12 16 18 N -0.59 -3.70 11.19 -203.99 -2.28 -5.98 16 19 C 0.18 0.96 13.03 180.76 2.36 3.32 16 20 N -0.34 -1.82 12.46 -61.24 -0.76 -2.58 16 21 C -0.15 0.42 7.43 31.12 0.23 0.65 16 22 C 0.10 0.61 6.57 41.69 0.27 0.89 16 23 C -0.05 -0.24 5.32 30.08 0.16 -0.08 16 24 C -0.12 0.16 5.98 30.78 0.18 0.34 16 25 C -0.13 0.49 5.92 30.69 0.18 0.67 16 26 C 0.10 -0.24 5.32 86.32 0.46 0.22 16 27 N -0.43 -0.92 3.11 -493.61 -1.54 -2.46 16 28 H 0.38 -1.98 8.63 -74.06 -0.64 -2.62 16 29 H 0.13 -0.62 7.96 -2.39 -0.02 -0.64 16 30 H -0.29 -1.00 7.11 99.48 0.71 -0.29 16 31 H -0.30 -0.98 7.11 99.48 0.71 -0.27 16 32 H 0.18 -1.16 6.51 -2.91 -0.02 -1.18 16 33 H 0.41 -1.42 7.83 -92.71 -0.73 -2.15 16 34 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 35 H 0.12 -1.53 8.10 -2.39 -0.02 -1.55 16 36 H 0.10 -0.97 8.14 -2.39 -0.02 -0.99 16 37 H 0.14 -2.00 7.79 -2.39 -0.02 -2.02 16 38 H 0.26 -2.65 8.06 -2.91 -0.02 -2.67 16 39 H 0.23 -0.10 8.06 -2.91 -0.02 -0.12 16 40 H 0.11 -0.69 7.90 -2.39 -0.02 -0.70 16 41 H 0.04 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.08 0.65 7.40 -2.39 -0.02 0.63 16 44 H 0.07 -0.06 8.12 -2.39 -0.02 -0.08 16 45 H 0.09 -0.30 8.14 -2.38 -0.02 -0.32 16 46 H 0.11 -0.79 8.14 -2.39 -0.02 -0.81 16 47 H 0.07 -0.15 8.11 -2.39 -0.02 -0.17 16 48 H 0.09 -0.39 7.94 -2.39 -0.02 -0.41 16 49 H 0.10 -0.26 7.69 -2.39 -0.02 -0.28 16 Total: 0.00 -28.68 397.43 0.23 -28.45 By element: Atomic # 1 Polarization: -16.59 SS G_CDS: -0.34 Total: -16.93 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 8.30 Total: 14.09 kcal Atomic # 7 Polarization: -7.03 SS G_CDS: -8.21 Total: -15.25 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -1.65 Total: -9.90 kcal Atomic # 14 Polarization: -2.60 SS G_CDS: 2.13 Total: -0.46 kcal Total: -28.68 0.23 -28.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_16915396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.889 kcal (2) G-P(sol) polarization free energy of solvation -28.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds