Wall clock time and date at job start Sun Mar 7 2021 04:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86298 * 109.47008 * 2 1 4 4 C 1.50705 * 109.46783 * 240.00640 * 2 1 3 5 5 C 1.38715 * 120.02514 * 284.99384 * 4 2 1 6 6 O 1.35898 * 120.05279 * 359.74826 * 5 4 2 7 7 C 1.42902 * 116.99730 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47390 * 180.02562 * 7 6 5 9 9 O 1.21281 * 119.99695 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00039 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99637 * 180.02562 * 10 8 7 12 12 H 1.08998 * 112.85042 * 334.66303 * 11 10 8 13 13 C 1.53790 * 113.61391 * 105.86178 * 11 10 8 14 14 C 1.54055 * 86.98276 * 89.15879 * 13 11 10 15 15 H 1.08996 * 113.61272 * 270.87859 * 14 13 11 16 16 C 1.53000 * 113.61651 * 139.97999 * 14 13 11 17 17 N 1.46503 * 109.47290 * 87.49915 * 16 14 13 18 18 C 1.34434 * 126.81995 * 124.70674 * 17 16 14 19 19 N 1.30833 * 108.07560 * 179.89668 * 18 17 16 20 20 C 1.33243 * 109.82792 * 0.38526 * 19 18 17 21 21 N 1.30710 * 108.94862 * 359.76077 * 20 19 18 22 22 C 1.53773 * 87.07981 * 25.43255 * 14 13 11 23 23 C 1.38755 * 119.88882 * 179.72734 * 5 4 2 24 24 C 1.38117 * 119.94118 * 0.02562 * 23 5 4 25 25 C 1.38289 * 120.05983 * 0.02562 * 24 23 5 26 26 C 1.38166 * 120.02903 * 104.72469 * 4 2 1 27 27 H 0.96697 * 114.00041 * 300.00095 * 1 2 3 28 28 H 1.08994 * 109.47320 * 120.00223 * 2 1 3 29 29 H 1.48497 * 110.00255 * 178.68394 * 3 2 1 30 30 H 1.48502 * 110.00523 * 300.00262 * 3 2 1 31 31 H 1.09000 * 109.47521 * 300.00502 * 7 6 5 32 32 H 1.09007 * 109.47162 * 60.00566 * 7 6 5 33 33 H 0.96998 * 120.00284 * 359.97438 * 10 8 7 34 34 H 1.08992 * 113.61136 * 203.66464 * 13 11 10 35 35 H 1.09001 * 113.61350 * 334.56604 * 13 11 10 36 36 H 1.08997 * 109.47103 * 207.50362 * 16 14 13 37 37 H 1.09009 * 109.47262 * 327.50444 * 16 14 13 38 38 H 1.07998 * 125.96055 * 0.04439 * 18 17 16 39 39 H 1.07996 * 125.52294 * 179.80384 * 20 19 18 40 40 H 1.08998 * 113.61514 * 220.02482 * 22 14 13 41 41 H 1.08995 * 113.69570 * 89.12697 * 22 14 13 42 42 H 1.07995 * 120.02466 * 179.97438 * 23 5 4 43 43 H 1.08000 * 119.97105 * 179.97438 * 24 23 5 44 44 H 1.08000 * 119.94758 * 180.02562 * 25 24 23 45 45 H 1.08001 * 119.97380 * 0.26819 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 1.8697 -2.0940 -1.3071 6 8 1.3612 -2.8109 -0.2707 7 6 1.3282 -4.2318 -0.4192 8 6 0.7361 -4.8529 0.8197 9 8 0.3771 -4.1480 1.7391 10 7 0.6054 -6.1914 0.9059 11 6 0.0292 -6.7950 2.1101 12 1 0.1504 -6.1713 2.9957 13 6 -1.4052 -7.3136 1.9133 14 6 -0.7753 -8.6509 1.4797 15 1 -0.5666 -8.7092 0.4115 16 6 -1.5188 -9.8789 2.0091 17 7 -2.5884 -10.2419 1.0761 18 6 -2.7743 -11.4369 0.4890 19 7 -3.8373 -11.3557 -0.2694 20 6 -4.3498 -10.1278 -0.1992 21 7 -3.6198 -9.4089 0.6124 22 6 0.4475 -8.2591 2.3258 23 6 2.3277 -2.7447 -2.4438 24 6 2.8441 -2.0136 -3.4957 25 6 2.9055 -0.6344 -3.4166 26 6 2.4484 0.0164 -2.2858 27 1 -0.3933 0.4417 0.7650 28 1 1.7924 -0.5138 0.8899 29 1 3.5346 1.7704 0.0320 30 1 1.5615 2.4680 -1.2084 31 1 0.7175 -4.4928 -1.2835 32 1 2.3419 -4.6056 -0.5644 33 1 0.8921 -6.7551 0.1705 34 1 -1.9763 -7.3798 2.8393 35 1 -1.9475 -6.8058 1.1157 36 1 -0.8224 -10.7118 2.1053 37 1 -1.9493 -9.6506 2.9842 38 1 -2.1555 -12.3120 0.6222 39 1 -5.2268 -9.7828 -0.7267 40 1 1.3999 -8.5140 1.8611 41 1 0.3833 -8.5830 3.3646 42 1 2.2811 -3.8219 -2.5056 43 1 3.2012 -2.5197 -4.3805 44 1 3.3093 -0.0645 -4.2403 45 1 2.4966 1.0938 -2.2267 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_2989392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:41:53 Heat of formation + Delta-G solvation = 56.699419 kcal Electronic energy + Delta-G solvation = -29099.140736 eV Core-core repulsion = 24894.231011 eV Total energy + Delta-G solvation = -4204.909725 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.97277 -41.78389 -41.12985 -39.65859 -38.45087 -37.52348 -35.46831 -34.02298 -32.98400 -32.15165 -31.43379 -29.90542 -28.60297 -26.73784 -26.71609 -24.73586 -23.71821 -22.85195 -22.60882 -22.39877 -21.94143 -20.40485 -19.42901 -18.55240 -18.45354 -18.11527 -17.53948 -17.40764 -16.96552 -16.81288 -16.75993 -16.13155 -15.85865 -15.73717 -15.57790 -15.23414 -15.20870 -15.07403 -14.81611 -14.61298 -14.13090 -14.05795 -13.83805 -13.69625 -13.46495 -13.13325 -13.07932 -12.83697 -12.76813 -12.25922 -12.21203 -12.03772 -11.85122 -11.76095 -11.27516 -11.09750 -10.96391 -10.78616 -10.55684 -10.28990 -10.20615 -10.13905 -9.36581 -4.98632 0.05587 0.24991 0.71881 1.25694 1.33681 1.37957 1.47592 1.59450 1.88111 2.01901 2.47497 2.52726 3.29485 3.39678 3.44064 3.47004 3.54554 3.64170 3.65389 3.74489 3.81565 3.89369 3.95272 3.99346 4.03361 4.12840 4.13085 4.19309 4.22550 4.37360 4.43865 4.50932 4.58786 4.65562 4.75340 4.81522 4.82500 4.97108 5.02444 5.11285 5.12635 5.20442 5.32990 5.34146 5.46300 5.49939 5.58672 5.96815 6.14895 6.36466 6.83912 7.03828 7.14860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.080 4.080 3 Si 0.782 3.218 4 C -0.136 4.136 5 C 0.132 3.868 6 O -0.307 6.307 7 C 0.035 3.965 8 C 0.516 3.484 9 O -0.566 6.566 10 N -0.693 5.693 11 C 0.109 3.891 12 H 0.084 0.916 13 C -0.140 4.140 14 C -0.109 4.109 15 H 0.092 0.908 16 C 0.130 3.870 17 N -0.378 5.378 18 C 0.256 3.744 19 N -0.586 5.586 20 C 0.183 3.817 21 N -0.344 5.344 22 C -0.111 4.111 23 C -0.208 4.208 24 C -0.073 4.073 25 C -0.157 4.157 26 C -0.104 4.104 27 H 0.397 0.603 28 H 0.065 0.935 29 H -0.285 1.285 30 H -0.281 1.281 31 H 0.116 0.884 32 H 0.127 0.873 33 H 0.419 0.581 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.145 0.855 37 H 0.095 0.905 38 H 0.260 0.740 39 H 0.227 0.773 40 H 0.099 0.901 41 H 0.120 0.880 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.149 0.851 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.965 -5.972 0.604 8.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.189 4.189 3 Si 0.686 3.314 4 C -0.137 4.137 5 C 0.086 3.914 6 O -0.220 6.220 7 C -0.043 4.043 8 C 0.302 3.698 9 O -0.443 6.443 10 N -0.347 5.347 11 C 0.004 3.996 12 H 0.102 0.898 13 C -0.179 4.179 14 C -0.128 4.128 15 H 0.111 0.889 16 C 0.009 3.991 17 N -0.169 5.169 18 C -0.040 4.040 19 N -0.314 5.314 20 C -0.120 4.120 21 N -0.173 5.173 22 C -0.149 4.149 23 C -0.226 4.226 24 C -0.090 4.090 25 C -0.175 4.175 26 C -0.122 4.122 27 H 0.247 0.753 28 H 0.083 0.917 29 H -0.211 1.211 30 H -0.209 1.209 31 H 0.134 0.866 32 H 0.145 0.855 33 H 0.256 0.744 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.163 0.837 37 H 0.113 0.887 38 H 0.275 0.725 39 H 0.244 0.756 40 H 0.117 0.883 41 H 0.138 0.862 42 H 0.180 0.820 43 H 0.179 0.821 44 H 0.167 0.833 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.981 -4.630 0.548 7.584 hybrid contribution -0.110 -0.731 -0.593 0.947 sum 5.871 -5.361 -0.045 7.951 Atomic orbital electron populations 1.86444 1.17718 1.82583 1.50569 1.24877 0.85650 1.11693 0.96633 0.94133 0.77465 0.75016 0.84778 1.19060 1.05680 0.91411 0.97558 1.18995 0.93922 0.90803 0.87634 1.86162 1.78071 1.18751 1.38989 1.22732 1.04651 0.79777 0.97145 1.20431 0.78160 0.83035 0.88166 1.90759 1.50063 1.62401 1.41094 1.45341 1.63399 1.05402 1.20536 1.21942 0.94331 0.95480 0.87855 0.89801 1.23455 0.96025 0.96662 1.01736 1.22830 0.96494 0.92971 1.00544 0.88937 1.22272 0.85925 1.00292 0.90575 1.50785 1.21995 1.08763 1.35319 1.26913 0.95082 0.91876 0.90100 1.70545 1.12382 1.22132 1.26311 1.26411 1.00720 0.87963 0.96926 1.78027 1.01914 1.19206 1.18131 1.23265 0.97876 0.91305 1.02493 1.21670 1.05135 1.02113 0.93728 1.21422 0.95410 0.93630 0.98566 1.21380 1.02275 0.95645 0.98225 1.21026 0.98381 0.99355 0.93413 0.75332 0.91709 1.21138 1.20876 0.86614 0.85534 0.74371 0.89175 0.93507 0.83706 0.88729 0.72478 0.75645 0.88266 0.86217 0.81978 0.82076 0.83329 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -5.25 12.86 -148.98 -1.92 -7.17 16 2 C -0.08 -0.64 2.37 71.24 0.17 -0.47 16 3 Si 0.78 2.01 30.21 68.60 2.07 4.08 16 4 C -0.14 -1.40 5.30 -19.77 -0.10 -1.51 16 5 C 0.13 1.11 6.66 22.51 0.15 1.26 16 6 O -0.31 -2.98 9.00 -73.36 -0.66 -3.64 16 7 C 0.03 -0.01 5.22 71.24 0.37 0.36 16 8 C 0.52 2.27 7.91 87.66 0.69 2.97 16 9 O -0.57 -8.89 16.12 16.00 0.26 -8.63 16 10 N -0.69 2.45 5.26 -440.01 -2.32 0.13 16 11 C 0.11 -0.33 4.30 45.52 0.20 -0.13 16 12 H 0.08 0.19 7.50 -2.39 -0.02 0.17 16 13 C -0.14 0.24 7.45 31.22 0.23 0.47 16 14 C -0.11 0.92 3.74 -10.18 -0.04 0.88 16 15 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 16 C 0.13 -1.25 6.39 86.38 0.55 -0.70 16 17 N -0.38 0.68 3.69 -352.04 -1.30 -0.62 16 18 C 0.26 -0.64 12.63 180.36 2.28 1.64 16 19 N -0.59 -2.98 11.19 -204.00 -2.28 -5.26 16 20 C 0.18 0.91 13.03 180.77 2.36 3.27 16 21 N -0.34 -1.84 12.57 -61.25 -0.77 -2.61 16 22 C -0.11 1.26 7.38 31.12 0.23 1.49 16 23 C -0.21 -0.33 9.04 22.36 0.20 -0.13 16 24 C -0.07 -0.03 10.04 22.25 0.22 0.20 16 25 C -0.16 -0.51 10.04 22.28 0.22 -0.29 16 26 C -0.10 -0.82 8.66 22.25 0.19 -0.62 16 27 H 0.40 -0.27 8.74 -74.06 -0.65 -0.92 16 28 H 0.06 0.56 7.82 -2.39 -0.02 0.54 16 29 H -0.28 -2.02 7.11 99.48 0.71 -1.31 16 30 H -0.28 -2.08 6.74 99.48 0.67 -1.41 16 31 H 0.12 -0.59 7.66 -2.39 -0.02 -0.61 16 32 H 0.13 -0.94 7.66 -2.38 -0.02 -0.96 16 33 H 0.42 -4.46 8.70 -92.71 -0.81 -5.27 16 34 H 0.09 -0.10 7.90 -2.39 -0.02 -0.12 16 35 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.15 -2.53 8.09 -2.39 -0.02 -2.55 16 37 H 0.09 -0.89 7.85 -2.38 -0.02 -0.91 16 38 H 0.26 -3.36 8.06 -2.91 -0.02 -3.39 16 39 H 0.23 -0.01 8.06 -2.91 -0.02 -0.03 16 40 H 0.10 -1.40 8.14 -2.39 -0.02 -1.42 16 41 H 0.12 -1.67 8.10 -2.39 -0.02 -1.69 16 42 H 0.16 -0.96 6.30 -2.91 -0.02 -0.98 16 43 H 0.16 -1.00 8.06 -2.91 -0.02 -1.03 16 44 H 0.15 -0.23 8.06 -2.91 -0.02 -0.25 16 45 H 0.13 0.87 4.90 -2.91 -0.01 0.85 16 Total: 0.00 -37.43 382.79 0.60 -36.83 By element: Atomic # 1 Polarization: -21.36 SS G_CDS: -0.41 Total: -21.77 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 7.93 Total: 8.67 kcal Atomic # 7 Polarization: -1.70 SS G_CDS: -6.67 Total: -8.36 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -2.32 Total: -19.44 kcal Atomic # 14 Polarization: 2.01 SS G_CDS: 2.07 Total: 4.08 kcal Total: -37.43 0.60 -36.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_2989392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.529 kcal (2) G-P(sol) polarization free energy of solvation -37.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds