Wall clock time and date at job start Sun Mar 7 2021 04:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86307 * 109.46921 * 2 1 4 4 C 1.50701 * 109.46578 * 240.00397 * 2 1 3 5 5 C 1.38259 * 119.94345 * 299.99523 * 4 2 1 6 6 C 1.38149 * 120.05341 * 180.02562 * 5 4 2 7 7 C 1.38727 * 119.94793 * 359.97438 * 6 5 4 8 8 O 1.35899 * 120.05726 * 180.02562 * 7 6 5 9 9 C 1.42904 * 116.99846 * 180.02562 * 8 7 6 10 10 C 1.50692 * 109.46839 * 180.02562 * 9 8 7 11 11 O 1.21284 * 120.00657 * 359.97438 * 10 9 8 12 12 N 1.34788 * 120.00020 * 180.02562 * 10 9 8 13 13 C 1.46495 * 119.99843 * 180.02562 * 12 10 9 14 14 H 1.08996 * 112.91140 * 23.74219 * 13 12 10 15 15 C 1.53781 * 113.61307 * 154.99869 * 13 12 10 16 16 C 1.53783 * 87.08306 * 89.11069 * 15 13 12 17 17 H 1.08998 * 113.61300 * 270.79937 * 16 15 13 18 18 C 1.52999 * 113.61446 * 139.98057 * 16 15 13 19 19 N 1.46500 * 109.47084 * 174.99740 * 18 16 15 20 20 C 1.34429 * 126.81895 * 124.99739 * 19 18 16 21 21 N 1.30837 * 108.07952 * 180.02562 * 20 19 18 22 22 C 1.33246 * 109.82318 * 359.97438 * 21 20 19 23 23 N 1.30712 * 108.94935 * 0.27015 * 22 21 20 24 24 C 1.53783 * 113.61117 * 252.49203 * 13 12 10 25 25 C 1.38734 * 119.88304 * 0.27467 * 7 6 5 26 26 C 1.38140 * 119.94689 * 359.47636 * 25 7 6 27 27 H 0.96702 * 114.00102 * 59.99638 * 1 2 3 28 28 H 1.08993 * 109.47430 * 119.99976 * 2 1 3 29 29 H 1.48492 * 109.99850 * 60.00409 * 3 2 1 30 30 H 1.48499 * 109.99778 * 181.32072 * 3 2 1 31 31 H 1.07995 * 119.97457 * 359.97438 * 5 4 2 32 32 H 1.08004 * 120.02206 * 179.97438 * 6 5 4 33 33 H 1.08995 * 109.47100 * 59.99292 * 9 8 7 34 34 H 1.09004 * 109.47048 * 299.99589 * 9 8 7 35 35 H 0.96998 * 119.99685 * 359.97438 * 12 10 9 36 36 H 1.09001 * 113.61192 * 334.56408 * 15 13 12 37 37 H 1.09000 * 113.61565 * 203.65678 * 15 13 12 38 38 H 1.09002 * 109.47279 * 55.00027 * 18 16 15 39 39 H 1.08995 * 109.47424 * 295.00206 * 18 16 15 40 40 H 1.08000 * 125.96300 * 0.02949 * 20 19 18 41 41 H 1.08002 * 125.52127 * 179.97438 * 22 21 20 42 42 H 1.08995 * 113.61677 * 156.34169 * 24 13 12 43 43 H 1.08999 * 113.61392 * 25.43345 * 24 13 12 44 44 H 1.07999 * 120.02191 * 179.72157 * 25 7 6 45 45 H 1.07999 * 119.97433 * 180.27947 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7104 -1.2306 5 6 1.5965 -2.0340 -1.4482 6 6 2.0561 -2.6876 -2.5752 7 6 2.8536 -2.0145 -3.4893 8 8 3.3065 -2.6551 -4.5990 9 6 4.1233 -1.8999 -5.4960 10 6 4.5274 -2.7685 -6.6592 11 8 4.1533 -3.9209 -6.7145 12 7 5.3056 -2.2650 -7.6379 13 6 5.6980 -3.1093 -8.7689 14 1 5.0113 -3.9386 -8.9378 15 6 6.0309 -2.3158 -10.0435 16 6 7.4774 -2.2438 -9.5265 17 1 7.6721 -1.3782 -8.8933 18 6 8.5296 -2.4272 -10.6220 19 7 9.8652 -2.2244 -10.0552 20 6 10.9002 -3.0807 -10.1054 21 7 11.9122 -2.5313 -9.4841 22 6 11.5631 -1.3296 -9.0265 23 7 10.3169 -1.0990 -9.3467 24 6 7.1768 -3.5303 -8.7394 25 6 3.1923 -0.6878 -3.2659 26 6 2.7260 -0.0372 -2.1400 27 1 -0.3933 0.4418 -0.7650 28 1 1.7924 -0.5138 0.8899 29 1 1.5615 2.4679 1.2085 30 1 3.5346 1.7704 -0.0322 31 1 0.9760 -2.5578 -0.7362 32 1 1.7946 -3.7217 -2.7445 33 1 5.0149 -1.5549 -4.9725 34 1 3.5618 -1.0405 -5.8626 35 1 5.6052 -1.3435 -7.5935 36 1 5.5369 -1.3455 -10.0952 37 1 5.9231 -2.8962 -10.9598 38 1 8.3578 -1.7006 -11.4162 39 1 8.4573 -3.4353 -11.0301 40 1 10.8971 -4.0525 -10.5764 41 1 12.2043 -0.6573 -8.4758 42 1 7.3824 -4.4426 -9.2992 43 1 7.6080 -3.5404 -7.7384 44 1 3.8167 -0.1630 -3.9737 45 1 2.9856 0.9969 -1.9680 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688106_2989410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:41:58 Heat of formation + Delta-G solvation = 54.404060 kcal Electronic energy + Delta-G solvation = -28391.928552 eV Core-core repulsion = 24186.919293 eV Total energy + Delta-G solvation = -4205.009259 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.03876 -41.74588 -41.14657 -39.80521 -38.84050 -37.13826 -35.55822 -34.07804 -32.43153 -32.17018 -31.77419 -30.13051 -28.83109 -27.03602 -26.27307 -24.84191 -24.01468 -23.01614 -22.64662 -22.41799 -21.91822 -20.46223 -19.56738 -18.67828 -18.33968 -18.12464 -17.57617 -17.32040 -16.90466 -16.87629 -16.45817 -16.09941 -16.03870 -15.84197 -15.65055 -15.54840 -15.23396 -15.03216 -14.88830 -14.70971 -14.28073 -14.12231 -13.83526 -13.76325 -13.61637 -13.52141 -13.37846 -12.96103 -12.38866 -12.25587 -12.16049 -12.07477 -11.94531 -11.75806 -11.68552 -11.02088 -10.95790 -10.76981 -10.62742 -10.44454 -10.29687 -10.08104 -9.24999 -5.07832 0.25488 0.26560 0.63746 1.25749 1.27455 1.31489 1.36147 1.59027 1.94603 2.01835 2.43531 2.62952 3.09381 3.17848 3.21719 3.34693 3.36878 3.45653 3.50618 3.63268 3.68677 3.71237 3.82064 3.82599 3.84493 3.88752 3.96963 4.18138 4.23173 4.31279 4.39619 4.39993 4.40765 4.48402 4.56564 4.61526 4.72182 4.75429 4.88480 4.91685 5.11313 5.21248 5.24016 5.30890 5.44376 5.47349 5.64364 5.77720 6.13075 6.28294 6.56736 6.96898 7.10505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.063 4.063 3 Si 0.687 3.313 4 C -0.157 4.157 5 C -0.051 4.051 6 C -0.145 4.145 7 C 0.133 3.867 8 O -0.288 6.288 9 C 0.040 3.960 10 C 0.519 3.481 11 O -0.509 6.509 12 N -0.711 5.711 13 C 0.124 3.876 14 H 0.110 0.890 15 C -0.135 4.135 16 C -0.125 4.125 17 H 0.105 0.895 18 C 0.138 3.862 19 N -0.377 5.377 20 C 0.254 3.746 21 N -0.547 5.547 22 C 0.199 3.801 23 N -0.320 5.320 24 C -0.148 4.148 25 C -0.206 4.206 26 C -0.076 4.076 27 H 0.379 0.621 28 H 0.113 0.887 29 H -0.255 1.255 30 H -0.259 1.259 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.403 0.597 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.218 0.782 41 H 0.217 0.783 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.131 0.869 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.620 3.594 -5.316 6.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.174 4.174 3 Si 0.589 3.411 4 C -0.157 4.157 5 C -0.069 4.069 6 C -0.164 4.164 7 C 0.088 3.912 8 O -0.200 6.200 9 C -0.039 4.039 10 C 0.304 3.696 11 O -0.382 6.382 12 N -0.365 5.365 13 C 0.019 3.981 14 H 0.128 0.872 15 C -0.174 4.174 16 C -0.144 4.144 17 H 0.124 0.876 18 C 0.016 3.984 19 N -0.168 5.168 20 C -0.043 4.043 21 N -0.274 5.274 22 C -0.104 4.104 23 N -0.148 5.148 24 C -0.187 4.187 25 C -0.225 4.225 26 C -0.094 4.094 27 H 0.226 0.774 28 H 0.130 0.870 29 H -0.180 1.180 30 H -0.184 1.184 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.238 0.762 36 H 0.100 0.900 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.123 0.877 40 H 0.234 0.766 41 H 0.233 0.767 42 H 0.114 0.886 43 H 0.091 0.909 44 H 0.149 0.851 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.512 3.317 -4.235 5.403 hybrid contribution 0.451 -0.092 -0.035 0.461 sum -0.061 3.225 -4.270 5.351 Atomic orbital electron populations 1.86504 1.17169 1.81684 1.49268 1.24979 0.85190 1.09876 0.97403 0.94819 0.80831 0.78176 0.87266 1.20260 1.01806 0.95607 0.98057 1.20859 0.96784 0.93414 0.95834 1.20539 1.00395 1.01262 0.94154 1.19070 0.94343 0.91096 0.86703 1.86171 1.64251 1.38612 1.31009 1.22452 0.96493 0.94513 0.90394 1.20046 0.78411 0.88090 0.83038 1.90793 1.53125 1.17537 1.76750 1.45469 1.52539 1.15778 1.22716 1.21778 0.96416 0.94499 0.85449 0.87239 1.23352 0.94482 1.01812 0.97760 1.22993 0.93772 1.00176 0.97430 0.87644 1.21921 0.77045 1.03596 0.95857 1.50562 1.12016 1.12913 1.41341 1.26119 0.83278 0.97712 0.97194 1.70577 1.29539 1.09491 1.17768 1.26052 0.91561 0.93861 0.98931 1.78001 1.14051 1.07042 1.15669 1.23554 0.96170 0.97397 1.01531 1.21169 1.06140 0.94249 1.00918 1.20789 0.96235 0.99065 0.93263 0.77381 0.86956 1.17978 1.18387 0.84716 0.84623 0.88699 0.88526 0.76177 0.89980 0.87881 0.88927 0.87717 0.76579 0.76706 0.88620 0.90857 0.85076 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.11 12.77 -35.23 -0.45 -0.56 16 2 C -0.06 0.02 2.82 36.01 0.10 0.12 16 3 Si 0.69 -0.85 29.78 -169.99 -5.06 -5.92 16 4 C -0.16 -0.02 5.39 -104.60 -0.56 -0.59 16 5 C -0.05 -0.04 9.60 -39.61 -0.38 -0.42 16 6 C -0.14 -0.23 9.99 -39.43 -0.39 -0.62 16 7 C 0.13 0.20 6.69 -39.22 -0.26 -0.07 16 8 O -0.29 -0.70 9.67 -39.33 -0.38 -1.08 16 9 C 0.04 -0.06 5.22 36.00 0.19 0.13 16 10 C 0.52 0.35 7.91 -10.98 -0.09 0.26 16 11 O -0.51 -2.88 16.10 -14.36 -0.23 -3.11 16 12 N -0.71 1.81 5.26 -53.02 -0.28 1.53 16 13 C 0.12 -0.32 4.32 -67.12 -0.29 -0.61 16 14 H 0.11 -0.08 7.47 -51.93 -0.39 -0.47 16 15 C -0.14 0.67 7.39 -25.92 -0.19 0.48 16 16 C -0.12 0.50 3.75 -89.81 -0.34 0.16 16 17 H 0.11 -0.26 7.99 -51.93 -0.42 -0.68 16 18 C 0.14 -0.57 6.39 -4.04 -0.03 -0.59 16 19 N -0.38 0.26 3.69 -62.63 -0.23 0.03 16 20 C 0.25 -0.14 12.63 -90.65 -1.14 -1.28 16 21 N -0.55 -1.32 11.19 -15.83 -0.18 -1.50 16 22 C 0.20 0.32 13.03 -91.81 -1.20 -0.88 16 23 N -0.32 -0.56 12.44 29.29 0.36 -0.20 16 24 C -0.15 0.43 7.43 -25.92 -0.19 0.23 16 25 C -0.21 0.12 9.04 -39.43 -0.36 -0.24 16 26 C -0.08 0.05 8.66 -39.61 -0.34 -0.29 16 27 H 0.38 -1.38 8.70 45.56 0.40 -0.98 16 28 H 0.11 0.02 7.96 -51.93 -0.41 -0.39 16 29 H -0.25 -0.55 7.11 56.52 0.40 -0.14 16 30 H -0.26 -0.26 7.11 56.52 0.40 0.15 16 31 H 0.13 0.01 8.06 -52.49 -0.42 -0.41 16 32 H 0.14 0.15 8.06 -52.48 -0.42 -0.27 16 33 H 0.10 -0.35 7.65 -51.93 -0.40 -0.74 16 34 H 0.10 -0.40 7.67 -51.93 -0.40 -0.80 16 35 H 0.40 -2.12 8.70 -40.82 -0.36 -2.48 16 36 H 0.08 -0.42 8.14 -51.93 -0.42 -0.85 16 37 H 0.10 -0.63 8.10 -51.93 -0.42 -1.05 16 38 H 0.09 -0.42 8.14 -51.93 -0.42 -0.84 16 39 H 0.10 -0.70 7.79 -51.93 -0.40 -1.10 16 40 H 0.22 -1.04 8.06 -52.49 -0.42 -1.46 16 41 H 0.22 -0.30 8.06 -52.49 -0.42 -0.72 16 42 H 0.10 -0.37 7.90 -51.93 -0.41 -0.78 16 43 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 44 H 0.13 -0.43 6.30 -52.49 -0.33 -0.76 16 45 H 0.13 -0.35 4.87 -52.49 -0.26 -0.60 16 LS Contribution 383.13 15.07 5.77 5.77 Total: 0.00 -13.01 383.13 -12.10 -25.11 By element: Atomic # 1 Polarization: -9.92 SS G_CDS: -5.95 Total: -15.87 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -5.48 Total: -4.20 kcal Atomic # 7 Polarization: 0.18 SS G_CDS: -0.32 Total: -0.14 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -1.06 Total: -4.75 kcal Atomic # 14 Polarization: -0.85 SS G_CDS: -5.06 Total: -5.92 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -13.01 -12.10 -25.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_2989410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.511 kcal (2) G-P(sol) polarization free energy of solvation -13.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds