Wall clock time and date at job start Sun Mar 7 2021 04:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86307 * 109.46921 * 2 1 4 4 C 1.50701 * 109.46578 * 240.00397 * 2 1 3 5 5 C 1.38259 * 119.94345 * 299.99523 * 4 2 1 6 6 C 1.38149 * 120.05341 * 180.02562 * 5 4 2 7 7 C 1.38727 * 119.94793 * 359.97438 * 6 5 4 8 8 O 1.35899 * 120.05726 * 180.02562 * 7 6 5 9 9 C 1.42904 * 116.99846 * 180.02562 * 8 7 6 10 10 C 1.50692 * 109.46839 * 180.02562 * 9 8 7 11 11 O 1.21284 * 120.00657 * 359.97438 * 10 9 8 12 12 N 1.34788 * 120.00020 * 180.02562 * 10 9 8 13 13 C 1.46495 * 119.99843 * 180.02562 * 12 10 9 14 14 H 1.08996 * 112.91140 * 23.74219 * 13 12 10 15 15 C 1.53781 * 113.61307 * 154.99869 * 13 12 10 16 16 C 1.53783 * 87.08306 * 89.11069 * 15 13 12 17 17 H 1.08998 * 113.61300 * 270.79937 * 16 15 13 18 18 C 1.52999 * 113.61446 * 139.98057 * 16 15 13 19 19 N 1.46500 * 109.47084 * 174.99740 * 18 16 15 20 20 C 1.34429 * 126.81895 * 124.99739 * 19 18 16 21 21 N 1.30837 * 108.07952 * 180.02562 * 20 19 18 22 22 C 1.33246 * 109.82318 * 359.97438 * 21 20 19 23 23 N 1.30712 * 108.94935 * 0.27015 * 22 21 20 24 24 C 1.53783 * 113.61117 * 252.49203 * 13 12 10 25 25 C 1.38734 * 119.88304 * 0.27467 * 7 6 5 26 26 C 1.38140 * 119.94689 * 359.47636 * 25 7 6 27 27 H 0.96702 * 114.00102 * 59.99638 * 1 2 3 28 28 H 1.08993 * 109.47430 * 119.99976 * 2 1 3 29 29 H 1.48492 * 109.99850 * 60.00409 * 3 2 1 30 30 H 1.48499 * 109.99778 * 181.32072 * 3 2 1 31 31 H 1.07995 * 119.97457 * 359.97438 * 5 4 2 32 32 H 1.08004 * 120.02206 * 179.97438 * 6 5 4 33 33 H 1.08995 * 109.47100 * 59.99292 * 9 8 7 34 34 H 1.09004 * 109.47048 * 299.99589 * 9 8 7 35 35 H 0.96998 * 119.99685 * 359.97438 * 12 10 9 36 36 H 1.09001 * 113.61192 * 334.56408 * 15 13 12 37 37 H 1.09000 * 113.61565 * 203.65678 * 15 13 12 38 38 H 1.09002 * 109.47279 * 55.00027 * 18 16 15 39 39 H 1.08995 * 109.47424 * 295.00206 * 18 16 15 40 40 H 1.08000 * 125.96300 * 0.02949 * 20 19 18 41 41 H 1.08002 * 125.52127 * 179.97438 * 22 21 20 42 42 H 1.08995 * 113.61677 * 156.34169 * 24 13 12 43 43 H 1.08999 * 113.61392 * 25.43345 * 24 13 12 44 44 H 1.07999 * 120.02191 * 179.72157 * 25 7 6 45 45 H 1.07999 * 119.97433 * 180.27947 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9312 -0.7104 -1.2306 5 6 1.5965 -2.0340 -1.4482 6 6 2.0561 -2.6876 -2.5752 7 6 2.8536 -2.0145 -3.4893 8 8 3.3065 -2.6551 -4.5990 9 6 4.1233 -1.8999 -5.4960 10 6 4.5274 -2.7685 -6.6592 11 8 4.1533 -3.9209 -6.7145 12 7 5.3056 -2.2650 -7.6379 13 6 5.6980 -3.1093 -8.7689 14 1 5.0113 -3.9386 -8.9378 15 6 6.0309 -2.3158 -10.0435 16 6 7.4774 -2.2438 -9.5265 17 1 7.6721 -1.3782 -8.8933 18 6 8.5296 -2.4272 -10.6220 19 7 9.8652 -2.2244 -10.0552 20 6 10.9002 -3.0807 -10.1054 21 7 11.9122 -2.5313 -9.4841 22 6 11.5631 -1.3296 -9.0265 23 7 10.3169 -1.0990 -9.3467 24 6 7.1768 -3.5303 -8.7394 25 6 3.1923 -0.6878 -3.2659 26 6 2.7260 -0.0372 -2.1400 27 1 -0.3933 0.4418 -0.7650 28 1 1.7924 -0.5138 0.8899 29 1 1.5615 2.4679 1.2085 30 1 3.5346 1.7704 -0.0322 31 1 0.9760 -2.5578 -0.7362 32 1 1.7946 -3.7217 -2.7445 33 1 5.0149 -1.5549 -4.9725 34 1 3.5618 -1.0405 -5.8626 35 1 5.6052 -1.3435 -7.5935 36 1 5.5369 -1.3455 -10.0952 37 1 5.9231 -2.8962 -10.9598 38 1 8.3578 -1.7006 -11.4162 39 1 8.4573 -3.4353 -11.0301 40 1 10.8971 -4.0525 -10.5764 41 1 12.2043 -0.6573 -8.4758 42 1 7.3824 -4.4426 -9.2992 43 1 7.6080 -3.5404 -7.7384 44 1 3.8167 -0.1630 -3.9737 45 1 2.9856 0.9969 -1.9680 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_2989410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:41:57 Heat of formation + Delta-G solvation = 52.946804 kcal Electronic energy + Delta-G solvation = -28391.991744 eV Core-core repulsion = 24186.919293 eV Total energy + Delta-G solvation = -4205.072450 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.97757 -41.70423 -41.06194 -39.73652 -38.85010 -37.12751 -35.46371 -34.01394 -32.41015 -32.15045 -31.74903 -30.02963 -28.66305 -26.74573 -26.25183 -24.70303 -23.97244 -22.93979 -22.59347 -22.33779 -21.87039 -20.26168 -19.52566 -18.59579 -18.27035 -18.05115 -17.50983 -17.23236 -16.83717 -16.78977 -16.40257 -16.03183 -15.94857 -15.74165 -15.63020 -15.47775 -15.14598 -14.93835 -14.81950 -14.65885 -14.33939 -13.88667 -13.78318 -13.59345 -13.53175 -13.41631 -13.28171 -12.77855 -12.27671 -12.15146 -12.10916 -12.07286 -11.76656 -11.74422 -11.43279 -11.09118 -10.95911 -10.77799 -10.50707 -10.41940 -10.19220 -10.07046 -9.25477 -4.99938 0.24783 0.28094 0.70564 1.33268 1.35412 1.41619 1.46737 1.63652 1.97934 2.01834 2.53686 2.63290 3.38193 3.43138 3.47364 3.49800 3.54830 3.55346 3.71124 3.77307 3.80015 3.92741 3.94179 3.98826 4.04680 4.16636 4.20882 4.28250 4.39893 4.49299 4.50124 4.53174 4.63655 4.66930 4.74819 4.80914 4.94639 4.95143 5.02131 5.12881 5.13798 5.22664 5.32155 5.46820 5.47448 5.50345 5.67123 5.95089 6.21457 6.39236 6.78984 7.04745 7.14177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.073 4.073 3 Si 0.782 3.218 4 C -0.160 4.160 5 C -0.060 4.060 6 C -0.166 4.166 7 C 0.120 3.880 8 O -0.319 6.319 9 C 0.036 3.964 10 C 0.515 3.485 11 O -0.570 6.570 12 N -0.695 5.695 13 C 0.111 3.889 14 H 0.088 0.912 15 C -0.116 4.116 16 C -0.114 4.114 17 H 0.091 0.909 18 C 0.130 3.870 19 N -0.376 5.376 20 C 0.254 3.746 21 N -0.587 5.587 22 C 0.185 3.815 23 N -0.345 5.345 24 C -0.146 4.146 25 C -0.200 4.200 26 C -0.076 4.076 27 H 0.395 0.605 28 H 0.103 0.897 29 H -0.303 1.303 30 H -0.282 1.282 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.419 0.581 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.255 0.745 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.047 0.953 44 H 0.164 0.836 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.305 5.058 -6.944 8.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.183 4.183 3 Si 0.689 3.311 4 C -0.161 4.161 5 C -0.078 4.078 6 C -0.184 4.184 7 C 0.075 3.925 8 O -0.233 6.233 9 C -0.041 4.041 10 C 0.302 3.698 11 O -0.448 6.448 12 N -0.349 5.349 13 C 0.005 3.995 14 H 0.106 0.894 15 C -0.154 4.154 16 C -0.133 4.133 17 H 0.109 0.891 18 C 0.010 3.990 19 N -0.166 5.166 20 C -0.042 4.042 21 N -0.315 5.315 22 C -0.118 4.118 23 N -0.174 5.174 24 C -0.185 4.185 25 C -0.219 4.219 26 C -0.093 4.093 27 H 0.245 0.755 28 H 0.120 0.880 29 H -0.232 1.232 30 H -0.209 1.209 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.256 0.744 36 H 0.109 0.891 37 H 0.140 0.860 38 H 0.120 0.880 39 H 0.154 0.846 40 H 0.271 0.729 41 H 0.247 0.753 42 H 0.126 0.874 43 H 0.066 0.934 44 H 0.181 0.819 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.204 4.808 -5.912 7.623 hybrid contribution 0.334 -0.576 0.479 0.820 sum 0.130 4.232 -5.433 6.888 Atomic orbital electron populations 1.86464 1.17447 1.82212 1.50509 1.25182 0.85179 1.11011 0.96919 0.93752 0.77701 0.74933 0.84762 1.20366 1.01996 0.95319 0.98422 1.20904 0.97167 0.94037 0.95729 1.20623 1.01494 1.01271 0.95046 1.19213 0.94724 0.92022 0.86577 1.86127 1.65068 1.40321 1.31749 1.22732 0.97612 0.94397 0.89405 1.20538 0.77950 0.87545 0.83800 1.90764 1.55749 1.20120 1.78202 1.45395 1.51142 1.16440 1.21896 1.21899 0.96065 0.94787 0.86727 0.89360 1.23300 0.93129 1.01999 0.96978 1.22830 0.94593 0.98730 0.97165 0.89092 1.22273 0.75293 1.05774 0.95664 1.50753 1.13017 1.12136 1.40703 1.26830 0.82608 0.98602 0.96172 1.70550 1.31352 1.10246 1.19329 1.26442 0.91921 0.94193 0.99227 1.77912 1.14246 1.08593 1.16635 1.23564 0.95626 0.98723 1.00589 1.21495 1.05696 0.93329 1.01340 1.21067 0.95439 1.00061 0.92778 0.75502 0.87971 1.23160 1.20902 0.84864 0.85539 0.86148 0.85231 0.74354 0.89103 0.85965 0.88018 0.84598 0.72950 0.75286 0.87387 0.93387 0.81899 0.82968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.31 12.77 -148.98 -1.90 -2.22 16 2 C -0.07 0.03 2.82 71.24 0.20 0.23 16 3 Si 0.78 -2.48 29.78 68.60 2.04 -0.44 16 4 C -0.16 -0.04 5.39 -19.85 -0.11 -0.15 16 5 C -0.06 -0.18 9.60 22.25 0.21 0.03 16 6 C -0.17 -0.82 9.99 22.37 0.22 -0.59 16 7 C 0.12 0.41 6.69 22.51 0.15 0.56 16 8 O -0.32 -1.86 9.67 -73.38 -0.71 -2.56 16 9 C 0.04 -0.12 5.22 71.23 0.37 0.25 16 10 C 0.52 1.09 7.91 87.65 0.69 1.78 16 11 O -0.57 -7.79 16.10 15.99 0.26 -7.53 16 12 N -0.70 3.56 5.26 -440.04 -2.32 1.24 16 13 C 0.11 -0.56 4.32 45.52 0.20 -0.36 16 14 H 0.09 -0.02 7.47 -2.39 -0.02 -0.04 16 15 C -0.12 1.34 7.39 31.12 0.23 1.57 16 16 C -0.11 1.03 3.75 -10.27 -0.04 0.99 16 17 H 0.09 -0.50 7.99 -2.39 -0.02 -0.52 16 18 C 0.13 -1.31 6.39 86.38 0.55 -0.76 16 19 N -0.38 0.83 3.69 -352.06 -1.30 -0.47 16 20 C 0.25 -0.49 12.63 180.36 2.28 1.79 16 21 N -0.59 -2.97 11.19 -203.99 -2.28 -5.26 16 22 C 0.18 0.71 13.03 180.76 2.36 3.07 16 23 N -0.35 -1.27 12.44 -61.24 -0.76 -2.03 16 24 C -0.15 0.85 7.43 31.12 0.23 1.08 16 25 C -0.20 0.51 9.04 22.37 0.20 0.71 16 26 C -0.08 0.21 8.66 22.25 0.19 0.40 16 27 H 0.40 -3.02 8.70 -74.06 -0.64 -3.67 16 28 H 0.10 0.13 7.96 -2.39 -0.02 0.11 16 29 H -0.30 -1.50 7.11 99.48 0.71 -0.79 16 30 H -0.28 -0.22 7.11 99.48 0.71 0.48 16 31 H 0.13 0.29 8.06 -2.91 -0.02 0.26 16 32 H 0.13 0.69 8.06 -2.91 -0.02 0.66 16 33 H 0.12 -1.07 7.65 -2.39 -0.02 -1.09 16 34 H 0.13 -1.35 7.67 -2.39 -0.02 -1.37 16 35 H 0.42 -4.82 8.70 -92.71 -0.81 -5.62 16 36 H 0.09 -1.14 8.14 -2.39 -0.02 -1.16 16 37 H 0.12 -1.82 8.10 -2.39 -0.02 -1.83 16 38 H 0.10 -1.14 8.14 -2.39 -0.02 -1.16 16 39 H 0.14 -2.21 7.79 -2.39 -0.02 -2.23 16 40 H 0.25 -2.94 8.06 -2.91 -0.02 -2.96 16 41 H 0.23 -0.42 8.06 -2.91 -0.02 -0.44 16 42 H 0.11 -0.91 7.90 -2.39 -0.02 -0.93 16 43 H 0.05 -0.02 8.14 -2.39 -0.02 -0.03 16 44 H 0.16 -1.58 6.30 -2.91 -0.02 -1.60 16 45 H 0.15 -1.20 4.87 -2.91 -0.01 -1.22 16 Total: 0.00 -34.41 383.13 0.60 -33.81 By element: Atomic # 1 Polarization: -24.77 SS G_CDS: -0.37 Total: -25.15 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 7.95 Total: 10.60 kcal Atomic # 7 Polarization: 0.15 SS G_CDS: -6.66 Total: -6.51 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -2.35 Total: -12.31 kcal Atomic # 14 Polarization: -2.48 SS G_CDS: 2.04 Total: -0.44 kcal Total: -34.41 0.60 -33.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_2989410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.753 kcal (2) G-P(sol) polarization free energy of solvation -34.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds