Wall clock time and date at job start Sun Mar 7 2021 04:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86298 * 109.47259 * 2 1 4 4 C 1.50696 * 109.47392 * 120.00078 * 2 1 3 5 5 C 1.38268 * 119.94436 * 64.99705 * 4 2 1 6 6 C 1.38144 * 120.05568 * 179.97438 * 5 4 2 7 7 C 1.38728 * 119.94476 * 0.02562 * 6 5 4 8 8 O 1.35904 * 120.05320 * 179.97438 * 7 6 5 9 9 C 1.42904 * 116.99640 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.46839 * 180.02562 * 9 8 7 11 11 C 1.50710 * 109.46982 * 179.97438 * 10 9 8 12 12 O 1.21278 * 119.99514 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99822 * 179.97438 * 11 10 9 14 14 C 1.46493 * 119.99529 * 179.97438 * 13 11 10 15 15 H 1.08995 * 112.85653 * 336.20008 * 14 13 11 16 16 C 1.53790 * 113.69075 * 107.47271 * 14 13 11 17 17 C 1.53782 * 87.08061 * 89.12166 * 16 14 13 18 18 H 1.08990 * 113.69320 * 270.87297 * 17 16 14 19 19 C 1.53000 * 113.60844 * 139.98478 * 17 16 14 20 20 N 1.46494 * 109.47329 * 87.50201 * 19 17 16 21 21 C 1.34438 * 126.82245 * 124.99870 * 20 19 17 22 22 N 1.30831 * 108.07816 * 180.20890 * 21 20 19 23 23 C 1.33251 * 109.82578 * 359.59820 * 22 21 20 24 24 N 1.30712 * 108.94547 * 0.40841 * 23 22 21 25 25 C 1.53782 * 87.08269 * 25.43756 * 17 16 14 26 26 C 1.38736 * 119.88976 * 0.27496 * 7 6 5 27 27 C 1.38145 * 119.93774 * 359.46706 * 26 7 6 28 28 H 0.96704 * 114.00128 * 299.99660 * 1 2 3 29 29 H 1.09008 * 109.46756 * 240.00047 * 2 1 3 30 30 H 1.48510 * 109.99857 * 300.00211 * 3 2 1 31 31 H 1.48495 * 110.00230 * 61.32100 * 3 2 1 32 32 H 1.08004 * 119.97290 * 359.97438 * 5 4 2 33 33 H 1.08001 * 120.02613 * 180.02562 * 6 5 4 34 34 H 1.08993 * 109.47204 * 60.00058 * 9 8 7 35 35 H 1.09004 * 109.46988 * 300.00377 * 9 8 7 36 36 H 1.08995 * 109.47148 * 60.00176 * 10 9 8 37 37 H 1.09004 * 109.47285 * 299.99762 * 10 9 8 38 38 H 0.96994 * 119.99970 * 0.02562 * 13 11 10 39 39 H 1.09005 * 113.60955 * 334.57556 * 16 14 13 40 40 H 1.09000 * 113.61681 * 203.67685 * 16 14 13 41 41 H 1.09005 * 109.47410 * 327.50166 * 19 17 16 42 42 H 1.09000 * 109.46984 * 207.50476 * 19 17 16 43 43 H 1.08002 * 125.95849 * 359.93825 * 21 20 19 44 44 H 1.07997 * 125.52176 * 180.19871 * 23 22 21 45 45 H 1.09004 * 113.61865 * 89.11222 * 25 17 16 46 46 H 1.08996 * 113.61216 * 219.93596 * 25 17 16 47 47 H 1.07996 * 120.02545 * 179.71959 * 26 7 6 48 48 H 1.08000 * 119.96675 * 180.23158 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 1.6840 -2.0605 1.3972 6 6 2.1439 -2.7141 2.5240 7 6 2.8540 -2.0147 3.4889 8 8 3.3071 -2.6554 4.5985 9 6 4.0302 -1.8720 5.5500 10 6 4.4566 -2.7587 6.7217 11 6 5.2199 -1.9327 7.7250 12 8 5.4041 -0.7512 7.5229 13 7 5.6967 -2.5070 8.8472 14 6 6.4391 -1.7041 9.8221 15 1 6.8932 -0.8166 9.3816 16 6 5.6537 -1.4180 11.1130 17 6 6.2392 -2.7280 11.6662 18 1 5.6321 -3.6061 11.4469 19 6 6.6502 -2.6423 13.1375 20 7 5.4995 -2.9633 13.9855 21 6 5.4413 -3.9070 14.9412 22 7 4.2422 -3.8819 15.4641 23 6 3.5129 -2.9339 14.8768 24 7 4.2383 -2.3459 13.9621 25 6 7.4082 -2.5270 10.6875 26 6 3.0955 -0.6587 3.3222 27 6 2.6380 -0.0109 2.1910 28 1 -0.3933 0.4417 0.7651 29 1 1.7922 -0.5139 -0.8901 30 1 1.5614 2.4679 -1.2086 31 1 1.5879 2.4585 1.2242 32 1 1.1307 -2.6046 0.6459 33 1 1.9508 -3.7688 2.6536 34 1 3.3938 -1.0666 5.9163 35 1 4.9149 -1.4484 5.0746 36 1 5.0933 -3.5639 6.3551 37 1 3.5721 -3.1826 7.1973 38 1 5.5490 -3.4518 9.0089 39 1 4.5720 -1.4447 10.9810 40 1 5.9946 -0.5289 11.6435 41 1 6.9951 -1.6326 13.3603 42 1 7.4542 -3.3521 13.3321 43 1 6.2429 -4.5730 15.2246 44 1 2.4876 -2.6929 15.1154 45 1 8.2288 -1.9411 11.1017 46 1 7.7438 -3.4491 10.2130 47 1 3.6442 -0.1111 4.0741 48 1 2.8290 1.0439 2.0590 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_4549602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:42:01 Heat of formation + Delta-G solvation = 45.157271 kcal Electronic energy + Delta-G solvation = -29994.961027 eV Core-core repulsion = 25634.013178 eV Total energy + Delta-G solvation = -4360.947849 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.96939 -41.54413 -41.16390 -39.72139 -39.11802 -37.31626 -35.43195 -34.07353 -33.18121 -32.14884 -32.04182 -31.44435 -29.08347 -26.73750 -26.67276 -25.76016 -24.46346 -23.51937 -22.85032 -22.39554 -22.27134 -21.61852 -20.33644 -19.57915 -18.50242 -18.28675 -17.80156 -17.51940 -17.21290 -16.92763 -16.76097 -16.44591 -16.26653 -16.05095 -15.99615 -15.69617 -15.39858 -15.27184 -14.86896 -14.77191 -14.61377 -14.46352 -14.30910 -14.15368 -13.92978 -13.52406 -13.46367 -13.13628 -12.92470 -12.86329 -12.78981 -12.29606 -12.19362 -12.08700 -11.82095 -11.72562 -11.60372 -11.26380 -11.11802 -10.95941 -10.78385 -10.60684 -10.54910 -10.13709 -10.05880 -9.25089 -4.94550 0.25772 0.28657 0.72005 1.30362 1.45088 1.48022 1.56978 1.66141 1.92580 2.02138 2.44218 2.62823 3.31469 3.42761 3.46475 3.51424 3.54875 3.65521 3.69200 3.75550 3.80754 3.85424 3.87791 3.97672 3.98580 4.13225 4.23204 4.23652 4.31347 4.41033 4.45116 4.54608 4.59100 4.63846 4.64431 4.69558 4.75624 4.76380 4.85237 4.95771 4.99234 5.03977 5.14936 5.16052 5.26669 5.33882 5.46721 5.47291 5.55388 5.69954 5.96767 6.29040 6.40562 6.47323 7.10732 7.15070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.074 4.074 3 Si 0.760 3.240 4 C -0.158 4.158 5 C -0.058 4.058 6 C -0.158 4.158 7 C 0.123 3.877 8 O -0.321 6.321 9 C 0.073 3.927 10 C -0.133 4.133 11 C 0.521 3.479 12 O -0.582 6.582 13 N -0.699 5.699 14 C 0.108 3.892 15 H 0.086 0.914 16 C -0.139 4.139 17 C -0.110 4.110 18 H 0.091 0.909 19 C 0.130 3.870 20 N -0.377 5.377 21 C 0.256 3.744 22 N -0.586 5.586 23 C 0.182 3.818 24 N -0.344 5.344 25 C -0.114 4.114 26 C -0.210 4.210 27 C -0.081 4.081 28 H 0.385 0.615 29 H 0.127 0.873 30 H -0.301 1.301 31 H -0.287 1.287 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.417 0.583 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.144 0.856 43 H 0.259 0.741 44 H 0.228 0.772 45 H 0.118 0.882 46 H 0.096 0.904 47 H 0.138 0.862 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.798 -4.820 2.128 9.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.184 4.184 3 Si 0.666 3.334 4 C -0.159 4.159 5 C -0.076 4.076 6 C -0.177 4.177 7 C 0.078 3.922 8 O -0.235 6.235 9 C -0.002 4.002 10 C -0.172 4.172 11 C 0.309 3.691 12 O -0.462 6.462 13 N -0.351 5.351 14 C 0.003 3.997 15 H 0.104 0.896 16 C -0.178 4.178 17 C -0.130 4.130 18 H 0.109 0.891 19 C 0.009 3.991 20 N -0.168 5.168 21 C -0.040 4.040 22 N -0.314 5.314 23 C -0.120 4.120 24 N -0.172 5.172 25 C -0.153 4.153 26 C -0.229 4.229 27 C -0.099 4.099 28 H 0.234 0.766 29 H 0.145 0.855 30 H -0.229 1.229 31 H -0.214 1.214 32 H 0.159 0.841 33 H 0.160 0.840 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.254 0.746 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.161 0.839 43 H 0.275 0.725 44 H 0.244 0.756 45 H 0.136 0.864 46 H 0.114 0.886 47 H 0.156 0.844 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.514 -3.283 1.260 8.296 hybrid contribution -1.347 -0.123 0.779 1.561 sum 6.167 -3.405 2.039 7.334 Atomic orbital electron populations 1.86565 1.18640 1.80319 1.50135 1.25100 0.83277 1.11349 0.98639 0.94114 0.90519 0.72561 0.76184 1.20246 1.02589 0.95170 0.97855 1.21001 0.96514 0.93687 0.96403 1.20679 1.01723 1.01399 0.93860 1.19196 0.94603 0.91338 0.87104 1.85958 1.69298 1.38804 1.29442 1.22444 0.95891 0.93519 0.88382 1.21436 1.02895 0.99258 0.93626 1.20645 0.78485 0.87531 0.82433 1.90738 1.59581 1.18023 1.77810 1.45535 1.55817 1.13833 1.19909 1.21913 0.93823 0.95712 0.88271 0.89563 1.23394 0.99651 0.98311 0.96407 1.22778 0.98782 0.98448 0.92957 0.89115 1.22269 0.83904 1.04899 0.88010 1.50777 1.10715 1.26527 1.28795 1.26910 0.97198 0.92540 0.87379 1.70548 1.04643 1.24437 1.31763 1.26419 1.01927 0.91828 0.91846 1.78014 0.92331 1.22608 1.24277 1.23276 0.96033 1.01486 0.94464 1.21405 1.06576 0.93890 1.01001 1.21022 0.96055 1.00086 0.92722 0.76590 0.85525 1.22946 1.21367 0.84056 0.83988 0.91995 0.91216 0.85166 0.85992 0.74605 0.93387 0.89247 0.88723 0.83858 0.72528 0.75598 0.86404 0.88566 0.84378 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.00 12.83 -148.98 -1.91 -3.91 16 2 C -0.07 -0.04 2.80 71.23 0.20 0.16 16 3 Si 0.76 -0.28 29.88 68.60 2.05 1.77 16 4 C -0.16 -0.27 5.35 -19.85 -0.11 -0.38 16 5 C -0.06 -0.12 9.68 22.25 0.22 0.09 16 6 C -0.16 -0.48 9.99 22.36 0.22 -0.25 16 7 C 0.12 0.53 6.69 22.51 0.15 0.68 16 8 O -0.32 -1.08 10.14 -92.47 -0.94 -2.02 16 9 C 0.07 0.06 4.03 71.98 0.29 0.35 16 10 C -0.13 0.58 6.07 29.85 0.18 0.76 16 11 C 0.52 0.19 7.83 87.66 0.69 0.87 16 12 O -0.58 -5.53 15.58 -3.02 -0.05 -5.58 16 13 N -0.70 3.44 5.27 -440.02 -2.32 1.13 16 14 C 0.11 -0.46 4.32 45.53 0.20 -0.26 16 15 H 0.09 0.04 7.46 -2.39 -0.02 0.02 16 16 C -0.14 0.38 7.43 31.12 0.23 0.61 16 17 C -0.11 0.96 3.73 -10.27 -0.04 0.92 16 18 H 0.09 -0.65 8.14 -2.39 -0.02 -0.67 16 19 C 0.13 -1.27 6.39 86.38 0.55 -0.72 16 20 N -0.38 0.76 3.69 -352.06 -1.30 -0.54 16 21 C 0.26 -0.66 12.63 180.36 2.28 1.62 16 22 N -0.59 -2.88 11.19 -203.99 -2.28 -5.17 16 23 C 0.18 0.85 13.03 180.76 2.36 3.20 16 24 N -0.34 -1.68 12.57 -61.24 -0.77 -2.45 16 25 C -0.11 1.31 7.39 31.12 0.23 1.54 16 26 C -0.21 -0.67 9.04 22.37 0.20 -0.47 16 27 C -0.08 -0.13 8.66 22.25 0.19 0.06 16 28 H 0.39 -0.58 8.70 -74.05 -0.64 -1.22 16 29 H 0.13 -0.19 7.96 -2.38 -0.02 -0.21 16 30 H -0.30 -2.13 7.11 99.48 0.71 -1.42 16 31 H -0.29 -1.09 7.00 99.48 0.70 -0.39 16 32 H 0.14 -0.01 8.06 -2.91 -0.02 -0.04 16 33 H 0.14 0.06 8.06 -2.91 -0.02 0.04 16 34 H 0.06 0.17 7.61 -2.39 -0.02 0.15 16 35 H 0.07 0.11 7.63 -2.38 -0.02 0.09 16 36 H 0.13 -1.13 8.14 -2.39 -0.02 -1.15 16 37 H 0.12 -0.87 8.14 -2.38 -0.02 -0.89 16 38 H 0.42 -4.43 8.70 -92.71 -0.81 -5.24 16 39 H 0.05 0.15 8.14 -2.38 -0.02 0.13 16 40 H 0.09 -0.19 7.90 -2.39 -0.02 -0.21 16 41 H 0.09 -0.92 7.84 -2.38 -0.02 -0.93 16 42 H 0.14 -2.49 8.09 -2.39 -0.02 -2.51 16 43 H 0.26 -3.35 8.06 -2.91 -0.02 -3.37 16 44 H 0.23 -0.11 8.06 -2.91 -0.02 -0.13 16 45 H 0.12 -1.66 8.10 -2.39 -0.02 -1.67 16 46 H 0.10 -1.32 8.14 -2.39 -0.02 -1.34 16 47 H 0.14 0.23 6.30 -2.91 -0.02 0.21 16 48 H 0.14 -0.23 4.83 -2.91 -0.01 -0.24 16 Total: 0.00 -29.07 404.38 0.10 -28.97 By element: Atomic # 1 Polarization: -20.57 SS G_CDS: -0.42 Total: -20.99 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 8.04 Total: 8.79 kcal Atomic # 7 Polarization: -0.36 SS G_CDS: -6.67 Total: -7.03 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -2.90 Total: -11.51 kcal Atomic # 14 Polarization: -0.28 SS G_CDS: 2.05 Total: 1.77 kcal Total: -29.07 0.10 -28.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_4549602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.127 kcal (2) G-P(sol) polarization free energy of solvation -29.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds