Wall clock time and date at job start Sun Mar 7 2021 04:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86306 * 109.47304 * 2 1 4 4 C 1.50701 * 109.47330 * 120.00429 * 2 1 3 5 5 C 1.38244 * 119.96874 * 245.29178 * 4 2 1 6 6 C 1.38288 * 120.10735 * 180.25379 * 5 4 2 7 7 C 1.38126 * 120.05387 * 359.44975 * 6 5 4 8 8 C 1.38746 * 119.94556 * 0.28104 * 7 6 5 9 9 O 1.35900 * 120.05764 * 180.02562 * 8 7 6 10 10 C 1.42902 * 116.99943 * 359.97438 * 9 8 7 11 11 C 1.53004 * 109.47331 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.46881 * 180.02562 * 11 10 9 13 13 O 1.21276 * 120.00130 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99544 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00192 * 179.97438 * 14 12 11 16 16 H 1.09001 * 112.84749 * 25.33237 * 15 14 12 17 17 C 1.53777 * 113.61820 * 156.52306 * 15 14 12 18 18 C 1.53785 * 87.07950 * 89.11936 * 17 15 14 19 19 H 1.08996 * 113.61482 * 270.88381 * 18 17 15 20 20 C 1.53000 * 113.61409 * 140.06630 * 18 17 15 21 21 N 1.46501 * 109.47124 * 175.00201 * 20 18 17 22 22 C 1.34431 * 126.82864 * 124.70883 * 21 20 18 23 23 N 1.30831 * 108.07928 * 179.89377 * 22 21 20 24 24 C 1.33233 * 109.82976 * 0.38235 * 23 22 21 25 25 N 1.30720 * 108.94740 * 359.76174 * 24 23 22 26 26 C 1.53774 * 113.61534 * 254.13522 * 15 14 12 27 27 C 1.38166 * 119.97212 * 64.99802 * 4 2 1 28 28 H 0.96698 * 114.00367 * 299.99560 * 1 2 3 29 29 H 1.09007 * 109.46933 * 240.00527 * 2 1 3 30 30 H 1.48497 * 110.00196 * 178.68353 * 3 2 1 31 31 H 1.48500 * 109.99890 * 300.00694 * 3 2 1 32 32 H 1.07993 * 119.94966 * 0.02562 * 5 4 2 33 33 H 1.08002 * 119.97455 * 179.73146 * 6 5 4 34 34 H 1.07999 * 120.02655 * 180.25493 * 7 6 5 35 35 H 1.09002 * 109.46947 * 300.00698 * 10 9 8 36 36 H 1.08998 * 109.47276 * 60.00138 * 10 9 8 37 37 H 1.08997 * 109.46741 * 300.00019 * 11 10 9 38 38 H 1.08992 * 109.46839 * 60.00090 * 11 10 9 39 39 H 0.97009 * 120.00706 * 359.97438 * 14 12 11 40 40 H 1.09003 * 113.61651 * 203.66587 * 17 15 14 41 41 H 1.09002 * 113.61843 * 334.48759 * 17 15 14 42 42 H 1.08998 * 109.47348 * 294.99887 * 20 18 17 43 43 H 1.08994 * 109.47290 * 55.00375 * 20 18 17 44 44 H 1.07998 * 125.95334 * 0.03893 * 22 21 20 45 45 H 1.08002 * 125.52843 * 179.72577 * 24 23 22 46 46 H 1.08999 * 113.61902 * 25.43279 * 26 15 14 47 47 H 1.09006 * 113.61450 * 156.33278 * 26 15 14 48 48 H 1.08007 * 120.02833 * 0.04906 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.6335 -0.0105 2.1937 6 6 3.1003 -0.6607 3.3214 7 6 2.8562 -2.0093 3.4932 8 6 2.1469 -2.7129 2.5304 9 8 1.9049 -4.0397 2.6974 10 6 2.4107 -4.6466 3.8882 11 6 2.0433 -6.1318 3.8994 12 6 2.5763 -6.7716 5.1555 13 8 3.1899 -6.1054 5.9620 14 7 2.3719 -8.0843 5.3819 15 6 2.8903 -8.7065 6.6027 16 1 3.0173 -7.9955 7.4191 17 6 2.1381 -9.9843 7.0103 18 6 3.1342 -10.7573 6.1296 19 1 2.8151 -10.8550 5.0920 20 6 3.5889 -12.0850 6.7390 21 7 4.4363 -12.7977 5.7798 22 6 5.6852 -13.2496 5.9881 23 7 6.0951 -13.8309 4.8901 24 6 5.1432 -13.7631 3.9603 25 7 4.1077 -13.1393 4.4577 26 6 4.1207 -9.5978 6.3651 27 6 1.6845 -2.0596 1.3976 28 1 -0.3934 0.4416 0.7650 29 1 1.7922 -0.5138 -0.8901 30 1 3.5346 1.7703 0.0321 31 1 1.5614 2.4680 -1.2084 32 1 2.8209 1.0451 2.0637 33 1 3.6524 -0.1126 4.0706 34 1 3.2174 -2.5157 4.3760 35 1 3.4951 -4.5406 3.9176 36 1 1.9742 -4.1574 4.7590 37 1 0.9590 -6.2380 3.8698 38 1 2.4802 -6.6206 3.0287 39 1 1.8814 -8.6173 4.7367 40 1 2.2198 -10.2195 8.0715 41 1 1.1113 -10.0215 6.6463 42 1 4.1549 -11.8916 7.6502 43 1 2.7164 -12.6939 6.9755 44 1 6.2504 -13.1519 6.9032 45 1 5.2155 -14.1588 2.9580 46 1 4.6941 -9.3237 5.4795 47 1 4.7435 -9.7274 7.2503 48 1 1.1324 -2.6052 0.6465 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688106_4549614.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:42:07 Heat of formation + Delta-G solvation = 43.976248 kcal Electronic energy + Delta-G solvation = -30018.251336 eV Core-core repulsion = 25657.252275 eV Total energy + Delta-G solvation = -4360.999062 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.02782 -41.60523 -41.17918 -39.80583 -39.01938 -37.24115 -35.54774 -34.12845 -33.15866 -32.43615 -32.15813 -30.82797 -29.24798 -27.05221 -27.01516 -25.77457 -24.41964 -23.65086 -22.99802 -22.51983 -22.21508 -21.58051 -20.42084 -19.37690 -18.53151 -18.14913 -17.73115 -17.53261 -17.24537 -17.14381 -16.96928 -16.75219 -16.23265 -16.06723 -15.97782 -15.87502 -15.40260 -15.22531 -15.10504 -14.91949 -14.67974 -14.39573 -14.25265 -14.11324 -13.92739 -13.73502 -13.40547 -13.25779 -13.01873 -12.88989 -12.82419 -12.39108 -12.35090 -11.96371 -11.94604 -11.82392 -11.66582 -11.60905 -11.10597 -10.94940 -10.75820 -10.61663 -10.46523 -10.26168 -9.90257 -9.22322 -5.01572 0.24040 0.43216 0.64861 1.27102 1.28558 1.41144 1.59614 1.66155 1.98460 2.02921 2.37973 2.70302 3.10030 3.19742 3.23831 3.37696 3.43137 3.47449 3.52075 3.65539 3.71594 3.77872 3.80264 3.88888 3.90313 3.98106 4.06145 4.19040 4.21646 4.25713 4.32376 4.32663 4.40139 4.41599 4.50728 4.54001 4.57942 4.60829 4.70261 4.73835 4.76424 4.91621 4.99598 5.25216 5.28779 5.34197 5.40116 5.45573 5.46588 5.70602 5.78796 6.22683 6.38392 6.57750 6.98832 7.11594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.069 4.069 3 Si 0.691 3.309 4 C -0.082 4.082 5 C -0.154 4.154 6 C -0.073 4.073 7 C -0.202 4.202 8 C 0.132 3.868 9 O -0.316 6.316 10 C 0.075 3.925 11 C -0.142 4.142 12 C 0.525 3.475 13 O -0.535 6.535 14 N -0.712 5.712 15 C 0.122 3.878 16 H 0.108 0.892 17 C -0.136 4.136 18 C -0.125 4.125 19 H 0.105 0.895 20 C 0.138 3.862 21 N -0.377 5.377 22 C 0.253 3.747 23 N -0.547 5.547 24 C 0.199 3.801 25 N -0.319 5.319 26 C -0.147 4.147 27 C -0.125 4.125 28 H 0.379 0.621 29 H 0.115 0.885 30 H -0.258 1.258 31 H -0.254 1.254 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.404 0.596 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.218 0.782 45 H 0.217 0.783 46 H 0.072 0.928 47 H 0.094 0.906 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.098 -0.300 5.047 5.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.180 4.180 3 Si 0.592 3.408 4 C -0.083 4.083 5 C -0.171 4.171 6 C -0.091 4.091 7 C -0.221 4.221 8 C 0.087 3.913 9 O -0.230 6.230 10 C -0.001 4.001 11 C -0.182 4.182 12 C 0.311 3.689 13 O -0.412 6.412 14 N -0.364 5.364 15 C 0.016 3.984 16 H 0.126 0.874 17 C -0.175 4.175 18 C -0.144 4.144 19 H 0.124 0.876 20 C 0.016 3.984 21 N -0.168 5.168 22 C -0.043 4.043 23 N -0.274 5.274 24 C -0.104 4.104 25 N -0.147 5.147 26 C -0.186 4.186 27 C -0.144 4.144 28 H 0.227 0.773 29 H 0.132 0.868 30 H -0.182 1.182 31 H -0.180 1.180 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.239 0.761 40 H 0.120 0.880 41 H 0.100 0.900 42 H 0.123 0.877 43 H 0.111 0.889 44 H 0.234 0.766 45 H 0.233 0.767 46 H 0.091 0.909 47 H 0.113 0.887 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.580 0.350 4.148 4.453 hybrid contribution 0.103 -1.017 -0.020 1.022 sum -1.477 -0.667 4.128 4.435 Atomic orbital electron populations 1.86512 1.16937 1.81734 1.49212 1.25109 0.85347 1.10233 0.97309 0.94660 0.81117 0.77883 0.87106 1.20130 0.98003 0.93695 0.96466 1.20908 1.01624 0.99445 0.95152 1.20935 0.97493 0.93685 0.97005 1.21390 1.04166 0.95987 1.00555 1.18957 0.95177 0.82628 0.94541 1.85977 1.74449 1.20326 1.42253 1.22406 0.99681 0.91738 0.86247 1.21470 1.04371 0.95145 0.97202 1.20303 0.79261 0.81867 0.87463 1.90753 1.40604 1.62447 1.47360 1.45631 1.57871 1.09563 1.23320 1.21776 0.94353 0.94246 0.87994 0.87445 1.23337 0.98979 0.94139 1.00999 1.23035 0.97800 0.92250 1.01280 0.87648 1.21915 0.94910 0.92412 0.89164 1.50563 1.12956 1.42885 1.10418 1.26112 0.84949 0.93710 0.99571 1.70565 1.31730 1.24599 1.00486 1.26053 0.86799 0.97027 1.00520 1.78014 1.24311 1.21349 0.91046 1.23584 0.96751 0.95246 1.03018 1.20247 1.03210 0.93733 0.97202 0.77322 0.86798 1.18236 1.17952 0.85402 0.85116 0.84983 0.90955 0.90834 0.87308 0.87415 0.76071 0.87973 0.90017 0.87742 0.88928 0.76594 0.76693 0.90903 0.88734 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.41 12.83 -35.23 -0.45 -0.86 16 2 C -0.07 -0.03 2.80 36.01 0.10 0.08 16 3 Si 0.69 -0.48 29.80 -169.99 -5.07 -5.55 16 4 C -0.08 -0.09 5.35 -104.65 -0.56 -0.65 16 5 C -0.15 -0.02 8.67 -39.56 -0.34 -0.37 16 6 C -0.07 -0.02 10.04 -39.60 -0.40 -0.42 16 7 C -0.20 -0.26 9.04 -39.43 -0.36 -0.62 16 8 C 0.13 0.31 6.69 -39.22 -0.26 0.04 16 9 O -0.32 -0.62 10.14 -19.42 -0.20 -0.82 16 10 C 0.07 0.02 4.03 37.16 0.15 0.17 16 11 C -0.14 0.26 6.07 -27.88 -0.17 0.09 16 12 C 0.52 -0.06 7.83 -10.99 -0.09 -0.15 16 13 O -0.54 -2.00 15.60 5.56 0.09 -1.92 16 14 N -0.71 1.70 5.26 -53.02 -0.28 1.42 16 15 C 0.12 -0.31 4.29 -67.12 -0.29 -0.59 16 16 H 0.11 -0.10 7.50 -51.93 -0.39 -0.49 16 17 C -0.14 0.64 7.38 -25.92 -0.19 0.44 16 18 C -0.12 0.45 3.76 -89.67 -0.34 0.12 16 19 H 0.11 -0.20 8.00 -51.93 -0.42 -0.62 16 20 C 0.14 -0.53 6.39 -4.04 -0.03 -0.56 16 21 N -0.38 0.17 3.69 -62.63 -0.23 -0.06 16 22 C 0.25 -0.09 12.63 -90.65 -1.14 -1.24 16 23 N -0.55 -1.42 11.19 -15.83 -0.18 -1.60 16 24 C 0.20 0.37 13.03 -91.81 -1.20 -0.83 16 25 N -0.32 -0.67 12.45 29.29 0.36 -0.30 16 26 C -0.15 0.40 7.45 -25.78 -0.19 0.21 16 27 C -0.13 -0.27 9.62 -39.43 -0.38 -0.65 16 28 H 0.38 -1.19 8.70 45.56 0.40 -0.79 16 29 H 0.11 0.09 7.96 -51.93 -0.41 -0.33 16 30 H -0.26 -0.44 7.11 56.52 0.40 -0.04 16 31 H -0.25 -0.63 7.11 56.52 0.40 -0.22 16 32 H 0.13 -0.25 4.91 -52.49 -0.26 -0.51 16 33 H 0.13 -0.24 8.06 -52.49 -0.42 -0.66 16 34 H 0.13 0.04 6.30 -52.49 -0.33 -0.29 16 35 H 0.07 0.05 7.62 -51.93 -0.40 -0.35 16 36 H 0.07 0.03 7.62 -51.93 -0.40 -0.37 16 37 H 0.11 -0.36 8.14 -51.93 -0.42 -0.78 16 38 H 0.11 -0.32 8.14 -51.93 -0.42 -0.74 16 39 H 0.40 -1.82 8.70 -40.82 -0.36 -2.18 16 40 H 0.10 -0.60 8.10 -51.93 -0.42 -1.02 16 41 H 0.08 -0.39 8.14 -51.93 -0.42 -0.81 16 42 H 0.10 -0.67 7.80 -51.93 -0.40 -1.08 16 43 H 0.09 -0.39 8.14 -51.93 -0.42 -0.81 16 44 H 0.22 -1.01 8.06 -52.49 -0.42 -1.43 16 45 H 0.22 -0.25 8.06 -52.49 -0.42 -0.67 16 46 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 47 H 0.09 -0.36 7.91 -51.93 -0.41 -0.77 16 48 H 0.13 0.28 8.06 -52.48 -0.42 -0.14 16 LS Contribution 404.31 15.07 6.09 6.09 Total: 0.00 -11.74 404.31 -12.33 -24.07 By element: Atomic # 1 Polarization: -8.76 SS G_CDS: -6.80 Total: -15.56 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -5.68 Total: -4.91 kcal Atomic # 7 Polarization: -0.22 SS G_CDS: -0.32 Total: -0.55 kcal Atomic # 8 Polarization: -3.04 SS G_CDS: -0.56 Total: -3.60 kcal Atomic # 14 Polarization: -0.48 SS G_CDS: -5.07 Total: -5.55 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -11.74 -12.33 -24.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_4549614.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.050 kcal (2) G-P(sol) polarization free energy of solvation -11.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds