Wall clock time and date at job start Sun Mar 7 2021 04:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86301 * 109.47185 * 2 1 4 4 C 1.50702 * 109.47299 * 239.99703 * 2 1 3 5 5 C 1.38244 * 119.97307 * 119.99712 * 4 2 1 6 6 C 1.38284 * 120.11190 * 180.02562 * 5 4 2 7 7 C 1.38118 * 120.05623 * 0.02562 * 6 5 4 8 8 C 1.38753 * 119.94889 * 359.97226 * 7 6 5 9 9 O 1.35901 * 120.06027 * 180.02562 * 8 7 6 10 10 C 1.42892 * 116.99862 * 0.02562 * 9 8 7 11 11 C 1.52999 * 109.47318 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47695 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47385 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99943 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00107 * 180.02562 * 13 12 11 16 16 C 1.46498 * 120.00186 * 180.02562 * 15 13 12 17 17 H 1.08999 * 112.90525 * 336.24628 * 16 15 13 18 18 C 1.53778 * 113.61736 * 107.49948 * 16 15 13 19 19 C 1.53784 * 87.08081 * 89.11728 * 18 16 15 20 20 H 1.09004 * 113.61451 * 270.88641 * 19 18 16 21 21 C 1.52992 * 113.61673 * 139.98135 * 19 18 16 22 22 N 1.46503 * 109.47166 * 87.50094 * 21 19 18 23 23 C 1.34431 * 126.82362 * 125.00416 * 22 21 19 24 24 N 1.30831 * 108.07782 * 179.97438 * 23 22 21 25 25 C 1.33237 * 109.83037 * 359.97438 * 24 23 22 26 26 N 1.30715 * 108.94479 * 359.75928 * 25 24 23 27 27 C 1.53778 * 113.61412 * 205.00214 * 16 15 13 28 28 C 1.38168 * 119.96972 * 300.26032 * 4 2 1 29 29 H 0.96698 * 113.99864 * 300.00234 * 1 2 3 30 30 H 1.09004 * 109.46945 * 120.00042 * 2 1 3 31 31 H 1.48502 * 109.99635 * 178.68083 * 3 2 1 32 32 H 1.48501 * 109.99761 * 299.99643 * 3 2 1 33 33 H 1.08003 * 119.94277 * 0.02562 * 5 4 2 34 34 H 1.08003 * 119.96975 * 179.97438 * 6 5 4 35 35 H 1.08003 * 120.02769 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47289 * 59.99836 * 10 9 8 37 37 H 1.08998 * 109.47356 * 299.99969 * 10 9 8 38 38 H 1.09002 * 109.47097 * 59.99690 * 11 10 9 39 39 H 1.08999 * 109.46855 * 300.00797 * 11 10 9 40 40 H 1.09002 * 109.47262 * 59.99594 * 12 11 10 41 41 H 1.09001 * 109.46739 * 300.00409 * 12 11 10 42 42 H 0.97004 * 119.99709 * 359.97438 * 15 13 12 43 43 H 1.08993 * 113.61229 * 334.57051 * 18 16 15 44 44 H 1.09000 * 113.61263 * 203.66701 * 18 16 15 45 45 H 1.08996 * 109.47544 * 207.50317 * 21 19 18 46 46 H 1.09007 * 109.47088 * 327.50753 * 21 19 18 47 47 H 1.08001 * 125.95799 * 359.92465 * 23 22 21 48 48 H 1.07999 * 125.53244 * 179.97438 * 25 24 23 49 49 H 1.08998 * 113.61879 * 156.33410 * 27 16 15 50 50 H 1.08997 * 113.69304 * 25.43496 * 27 16 15 51 51 H 1.07999 * 120.03458 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7261 -0.0381 -2.1401 6 6 3.1882 -0.6871 -3.2704 7 6 2.8562 -2.0091 -3.4934 8 6 2.0588 -2.6863 -2.5819 9 8 1.7311 -3.9872 -2.7989 10 6 2.2430 -4.5958 -3.9860 11 6 1.7717 -6.0496 -4.0579 12 6 2.3202 -6.7015 -5.3287 13 6 1.8554 -8.1332 -5.3998 14 8 1.1547 -8.5877 -4.5203 15 7 2.2192 -8.9090 -6.4401 16 6 1.7668 -10.3007 -6.5095 17 1 1.5153 -10.7142 -5.5329 18 6 0.6887 -10.5455 -7.5784 19 6 1.8383 -10.8142 -8.5638 20 1 2.1944 -9.9191 -9.0738 21 6 1.5663 -11.9764 -9.5208 22 7 0.8570 -11.4801 -10.7027 23 6 1.2273 -11.6295 -11.9863 24 7 0.3302 -11.0452 -12.7383 25 6 -0.6237 -10.5146 -11.9743 26 7 -0.3482 -10.7594 -10.7202 27 6 2.6878 -11.2069 -7.3434 28 6 1.5928 -2.0317 -1.4511 29 1 -0.3933 0.4417 0.7650 30 1 1.7923 -0.5139 0.8900 31 1 3.5346 1.7702 0.0321 32 1 1.5615 2.4678 -1.2086 33 1 2.9865 0.9958 -1.9677 34 1 3.8086 -0.1595 -3.9797 35 1 3.2177 -2.5156 -4.3761 36 1 3.3325 -4.5672 -3.9683 37 1 1.8795 -4.0529 -4.8585 38 1 0.6822 -6.0779 -4.0759 39 1 2.1347 -6.5928 -3.1855 40 1 3.4097 -6.6733 -5.3104 41 1 1.9575 -6.1583 -6.2013 42 1 2.7799 -8.5456 -7.1433 43 1 0.1045 -9.6578 -7.8206 44 1 0.0691 -11.4204 -7.3812 45 1 2.5117 -12.4248 -9.8260 46 1 0.9544 -12.7255 -9.0180 47 1 2.1116 -12.1417 -12.3358 48 1 -1.4866 -9.9732 -12.3331 49 1 2.6148 -12.2626 -7.0822 50 1 3.7178 -10.8543 -7.3968 51 1 0.9688 -2.5555 -0.7422 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_4549616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:42:10 Heat of formation + Delta-G solvation = 38.744423 kcal Electronic energy + Delta-G solvation = -31593.417115 eV Core-core repulsion = 27076.653566 eV Total energy + Delta-G solvation = -4516.763550 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.183 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.98100 -41.47074 -41.27976 -39.69330 -39.15145 -37.37593 -35.43114 -34.98195 -33.83283 -32.68892 -32.15843 -31.40415 -29.37008 -28.18312 -26.85435 -26.73444 -24.72261 -23.83844 -23.53878 -22.85856 -22.38924 -21.90322 -21.54103 -20.33518 -19.01798 -18.47901 -18.41505 -18.08776 -17.54975 -17.53826 -17.12035 -16.99830 -16.75985 -16.43182 -16.12297 -15.90988 -15.56542 -15.38670 -15.34748 -14.97107 -14.79926 -14.64926 -14.58610 -14.38123 -14.17439 -13.99489 -13.61344 -13.47367 -13.30701 -13.26268 -13.11064 -12.82051 -12.65215 -12.49327 -12.33863 -12.20370 -12.11884 -11.79315 -11.73977 -11.68555 -11.27922 -11.04113 -10.97030 -10.79335 -10.56119 -10.44533 -10.11756 -9.97620 -9.39641 -4.94287 0.06953 0.23045 0.71123 1.26894 1.45771 1.53267 1.64226 1.84088 1.96333 2.01242 2.28636 2.51006 3.29879 3.36357 3.45168 3.53931 3.54678 3.64122 3.68211 3.75671 3.78048 3.82042 3.82468 3.95008 3.96507 4.08106 4.12089 4.14675 4.21506 4.26982 4.30090 4.34190 4.39689 4.43642 4.55555 4.57573 4.58034 4.69077 4.74231 4.84221 4.85172 4.94369 4.97796 5.02005 5.06015 5.13231 5.16633 5.20281 5.29051 5.33079 5.45874 5.56341 5.57219 5.95745 6.30688 6.45927 6.87112 7.14115 7.18439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.089 4.089 3 Si 0.787 3.213 4 C -0.052 4.052 5 C -0.184 4.184 6 C -0.073 4.073 7 C -0.206 4.206 8 C 0.122 3.878 9 O -0.333 6.333 10 C 0.056 3.944 11 C -0.101 4.101 12 C -0.127 4.127 13 C 0.510 3.490 14 O -0.588 6.588 15 N -0.702 5.702 16 C 0.106 3.894 17 H 0.081 0.919 18 C -0.139 4.139 19 C -0.109 4.109 20 H 0.092 0.908 21 C 0.130 3.870 22 N -0.378 5.378 23 C 0.256 3.744 24 N -0.586 5.586 25 C 0.183 3.817 26 N -0.345 5.345 27 C -0.114 4.114 28 C -0.146 4.146 29 H 0.404 0.596 30 H 0.093 0.907 31 H -0.284 1.284 32 H -0.296 1.296 33 H 0.121 0.879 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.131 0.869 41 H 0.123 0.877 42 H 0.416 0.584 43 H 0.047 0.953 44 H 0.087 0.913 45 H 0.145 0.855 46 H 0.093 0.907 47 H 0.260 0.740 48 H 0.228 0.772 49 H 0.116 0.884 50 H 0.097 0.903 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.237 -0.483 -1.266 8.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.197 4.197 3 Si 0.692 3.308 4 C -0.052 4.052 5 C -0.202 4.202 6 C -0.091 4.091 7 C -0.224 4.224 8 C 0.077 3.923 9 O -0.247 6.247 10 C -0.018 4.018 11 C -0.139 4.139 12 C -0.167 4.167 13 C 0.298 3.702 14 O -0.468 6.468 15 N -0.354 5.354 16 C 0.001 3.999 17 H 0.099 0.901 18 C -0.178 4.178 19 C -0.128 4.128 20 H 0.110 0.890 21 C 0.009 3.991 22 N -0.168 5.168 23 C -0.040 4.040 24 N -0.314 5.314 25 C -0.120 4.120 26 N -0.173 5.173 27 C -0.152 4.152 28 C -0.165 4.165 29 H 0.255 0.745 30 H 0.110 0.890 31 H -0.211 1.211 32 H -0.224 1.224 33 H 0.139 0.861 34 H 0.173 0.827 35 H 0.177 0.823 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.254 0.746 43 H 0.066 0.934 44 H 0.105 0.895 45 H 0.162 0.838 46 H 0.112 0.888 47 H 0.275 0.725 48 H 0.244 0.756 49 H 0.134 0.866 50 H 0.115 0.885 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.790 -0.478 -1.162 7.890 hybrid contribution -0.066 -0.486 -0.583 0.762 sum 7.723 -0.964 -1.745 7.976 Atomic orbital electron populations 1.86449 1.17214 1.82525 1.51357 1.25016 0.85976 1.11804 0.96937 0.94304 0.77215 0.74578 0.84679 1.19518 0.96516 0.93256 0.95956 1.20995 1.02781 0.99679 0.96698 1.21219 0.97537 0.94028 0.96333 1.21581 1.02936 0.96371 1.01523 1.19195 0.94670 0.83721 0.94709 1.86059 1.71536 1.22424 1.44730 1.23028 0.99838 0.93235 0.85724 1.21144 1.01528 0.92821 0.98413 1.21530 1.04790 0.90565 0.99805 1.21177 0.79003 0.89191 0.80780 1.90737 1.39600 1.75980 1.40477 1.45591 1.53124 1.11609 1.25038 1.21892 0.96691 0.82309 0.99053 0.90098 1.23390 0.96653 1.01802 0.95986 1.22766 0.97269 0.98352 0.94381 0.88963 1.22261 0.97765 0.96168 0.82858 1.50773 1.16969 1.40713 1.08373 1.26916 1.00019 0.96511 0.80534 1.70543 1.05928 1.18768 1.36137 1.26420 0.99733 0.99108 0.86699 1.78025 1.00465 1.16811 1.22035 1.23263 0.98803 1.01075 0.92069 1.20366 1.03540 0.94566 0.98034 0.74473 0.88953 1.21125 1.22355 0.86123 0.82676 0.82320 0.89516 0.90083 0.92335 0.91769 0.85095 0.85880 0.74623 0.93416 0.89460 0.83772 0.88834 0.72481 0.75571 0.86571 0.88496 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.60 12.74 -148.98 -1.90 -3.50 16 2 C -0.09 -0.20 2.81 71.24 0.20 0.00 16 3 Si 0.79 -0.71 29.79 68.60 2.04 1.33 16 4 C -0.05 -0.42 5.42 -19.88 -0.11 -0.53 16 5 C -0.18 -1.24 8.67 22.28 0.19 -1.04 16 6 C -0.07 -0.25 10.04 22.25 0.22 -0.03 16 7 C -0.21 -0.66 9.04 22.36 0.20 -0.46 16 8 C 0.12 0.98 6.69 22.51 0.15 1.13 16 9 O -0.33 -2.61 10.14 -92.43 -0.94 -3.55 16 10 C 0.06 -0.04 4.74 71.98 0.34 0.30 16 11 C -0.10 -0.12 4.87 30.59 0.15 0.03 16 12 C -0.13 0.70 5.70 29.85 0.17 0.87 16 13 C 0.51 1.05 7.83 87.66 0.69 1.73 16 14 O -0.59 -7.73 15.58 -3.03 -0.05 -7.78 16 15 N -0.70 2.63 5.26 -440.05 -2.32 0.32 16 16 C 0.11 -0.27 4.32 45.52 0.20 -0.07 16 17 H 0.08 0.24 7.47 -2.39 -0.02 0.23 16 18 C -0.14 0.18 7.43 31.12 0.23 0.42 16 19 C -0.11 0.85 3.73 -10.27 -0.04 0.81 16 20 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 21 C 0.13 -1.18 6.39 86.38 0.55 -0.63 16 22 N -0.38 0.58 3.69 -352.06 -1.30 -0.72 16 23 C 0.26 -0.59 12.63 180.36 2.28 1.69 16 24 N -0.59 -3.03 11.19 -204.00 -2.28 -5.31 16 25 C 0.18 0.91 13.03 180.77 2.36 3.27 16 26 N -0.34 -1.88 12.58 -61.25 -0.77 -2.65 16 27 C -0.11 1.18 7.39 31.12 0.23 1.41 16 28 C -0.15 -1.43 9.55 22.37 0.21 -1.22 16 29 H 0.40 -3.36 8.74 -74.06 -0.65 -4.00 16 30 H 0.09 -0.13 7.96 -2.39 -0.02 -0.15 16 31 H -0.28 -1.05 7.11 99.48 0.71 -0.35 16 32 H -0.30 -1.91 7.11 99.48 0.71 -1.20 16 33 H 0.12 0.64 4.87 -2.91 -0.01 0.63 16 34 H 0.16 -0.39 8.06 -2.91 -0.02 -0.42 16 35 H 0.16 -0.53 6.30 -2.91 -0.02 -0.55 16 36 H 0.09 -0.45 7.66 -2.39 -0.02 -0.47 16 37 H 0.08 -0.33 7.66 -2.39 -0.02 -0.35 16 38 H 0.06 0.36 8.10 -2.39 -0.02 0.35 16 39 H 0.06 0.33 8.10 -2.39 -0.02 0.31 16 40 H 0.13 -1.52 8.14 -2.39 -0.02 -1.54 16 41 H 0.12 -1.24 8.14 -2.39 -0.02 -1.26 16 42 H 0.42 -4.27 8.70 -92.71 -0.81 -5.07 16 43 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.09 -0.04 7.90 -2.39 -0.02 -0.06 16 45 H 0.14 -2.43 8.09 -2.39 -0.02 -2.45 16 46 H 0.09 -0.82 7.84 -2.38 -0.02 -0.84 16 47 H 0.26 -3.30 8.06 -2.91 -0.02 -3.33 16 48 H 0.23 -0.04 8.06 -2.91 -0.02 -0.07 16 49 H 0.12 -1.48 8.10 -2.39 -0.02 -1.50 16 50 H 0.10 -1.25 8.14 -2.39 -0.02 -1.27 16 51 H 0.13 1.29 8.06 -2.91 -0.02 1.27 16 Total: 0.00 -36.99 425.89 0.27 -36.72 By element: Atomic # 1 Polarization: -22.09 SS G_CDS: -0.45 Total: -22.54 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 8.23 Total: 7.68 kcal Atomic # 7 Polarization: -1.70 SS G_CDS: -6.67 Total: -8.36 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -2.88 Total: -14.82 kcal Atomic # 14 Polarization: -0.71 SS G_CDS: 2.04 Total: 1.33 kcal Total: -36.99 0.27 -36.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_4549616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.467 kcal (2) G-P(sol) polarization free energy of solvation -36.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds