Wall clock time and date at job start Sun Mar 7 2021 04:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86295 * 109.47078 * 2 1 4 4 C 1.50696 * 109.47323 * 120.00353 * 2 1 3 5 5 C 1.38270 * 119.94382 * 65.00106 * 4 2 1 6 6 C 1.38143 * 120.05378 * 180.02562 * 5 4 2 7 7 C 1.38735 * 119.94455 * 359.97438 * 6 5 4 8 8 O 1.35903 * 120.05503 * 179.72940 * 7 6 5 9 9 C 1.42895 * 117.00049 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47241 * 179.97438 * 9 8 7 11 11 C 1.36412 * 125.80711 * 89.99992 * 10 9 8 12 12 C 1.47385 * 127.18737 * 359.97438 * 11 10 9 13 13 O 1.21618 * 119.99853 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99910 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99803 * 180.02562 * 14 12 11 16 16 H 1.08995 * 112.85282 * 25.33652 * 15 14 12 17 17 C 1.53781 * 113.61234 * 156.52948 * 15 14 12 18 18 C 1.53781 * 87.08296 * 89.11455 * 17 15 14 19 19 H 1.09000 * 113.61382 * 270.79686 * 18 17 15 20 20 C 1.53003 * 113.61293 * 139.97800 * 18 17 15 21 21 N 1.46498 * 109.46667 * 174.99822 * 20 18 17 22 22 C 1.34432 * 126.81920 * 125.00633 * 21 20 18 23 23 N 1.30838 * 108.07785 * 179.97438 * 22 21 20 24 24 C 1.33238 * 109.82723 * 359.97438 * 23 22 21 25 25 N 1.30718 * 108.94966 * 359.75071 * 24 23 22 26 26 C 1.53782 * 113.61487 * 254.13305 * 15 14 12 27 27 C 1.47012 * 105.62097 * 179.97438 * 11 10 9 28 28 C 1.34176 * 105.95492 * 359.97438 * 27 11 10 29 29 O 1.33655 * 125.80217 * 269.69316 * 10 9 8 30 30 C 1.38726 * 119.88971 * 359.97438 * 7 6 5 31 31 C 1.38146 * 119.94297 * 0.02817 * 30 7 6 32 32 H 0.96700 * 113.99076 * 299.99303 * 1 2 3 33 33 H 1.09006 * 109.46709 * 240.00368 * 2 1 3 34 34 H 1.48501 * 110.00365 * 300.00097 * 3 2 1 35 35 H 1.48497 * 109.99891 * 61.32518 * 3 2 1 36 36 H 1.07993 * 119.97145 * 359.97438 * 5 4 2 37 37 H 1.08000 * 120.02832 * 179.97438 * 6 5 4 38 38 H 1.09000 * 109.47202 * 299.99846 * 9 8 7 39 39 H 1.08999 * 109.47281 * 59.99918 * 9 8 7 40 40 H 0.97001 * 120.00235 * 359.97438 * 14 12 11 41 41 H 1.09000 * 113.61562 * 203.66631 * 17 15 14 42 42 H 1.09004 * 113.61551 * 334.56355 * 17 15 14 43 43 H 1.08994 * 109.47496 * 295.00170 * 20 18 17 44 44 H 1.09006 * 109.46665 * 55.00700 * 20 18 17 45 45 H 1.08004 * 125.96477 * 359.97438 * 22 21 20 46 46 H 1.08003 * 125.52707 * 180.02562 * 24 23 22 47 47 H 1.09006 * 113.60997 * 25.43117 * 26 15 14 48 48 H 1.08997 * 113.61490 * 156.33590 * 26 15 14 49 49 H 1.07999 * 127.02470 * 180.02562 * 27 11 10 50 50 H 1.07997 * 125.44257 * 179.97438 * 28 27 11 51 51 H 1.07998 * 120.02970 * 179.97438 * 30 7 6 52 52 H 1.08005 * 119.96789 * 179.97438 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 1.2304 5 6 1.6841 -2.0606 1.3970 6 6 2.1431 -2.7140 2.5243 7 6 2.8532 -2.0145 3.4893 8 8 3.3011 -2.6539 4.6018 9 6 4.0254 -1.8710 5.5527 10 6 4.4381 -2.7425 6.7108 11 6 5.6022 -3.4473 6.8041 12 6 6.6887 -3.5085 5.8101 13 8 6.5976 -2.8841 4.7705 14 7 7.7827 -4.2571 6.0529 15 6 8.8630 -4.3174 5.0650 16 1 8.9002 -3.4366 4.4241 17 6 10.2260 -4.7003 5.6654 18 6 9.8384 -6.1664 5.4098 19 1 9.3027 -6.6274 6.2396 20 6 10.9963 -7.0263 4.8991 21 7 10.5616 -8.4219 4.8008 22 6 10.6209 -9.2094 3.7129 23 7 10.1372 -10.3820 4.0337 24 6 9.7614 -10.3815 5.3120 25 7 10.0066 -9.2050 5.8261 26 6 8.9166 -5.6452 4.2911 27 6 5.5467 -4.1332 8.1033 28 6 4.3762 -3.7809 8.6566 29 8 3.7281 -2.9516 7.8237 30 6 3.1009 -0.6602 3.3192 31 6 2.6397 -0.0114 2.1902 32 1 -0.3932 0.4416 0.7652 33 1 1.7923 -0.5138 -0.8901 34 1 1.5615 2.4679 -1.2085 35 1 1.5880 2.4584 1.2243 36 1 1.1310 -2.6046 0.6458 37 1 1.9494 -3.7685 2.6543 38 1 4.9130 -1.4526 5.0780 39 1 3.3916 -1.0617 5.9152 40 1 7.8553 -4.7554 6.8819 41 1 11.0752 -4.3632 5.0710 42 1 10.3228 -4.4522 6.7224 43 1 11.3060 -6.6721 3.9160 44 1 11.8349 -6.9550 5.5919 45 1 11.0013 -8.9240 2.7432 46 1 9.3287 -11.2189 5.8393 47 1 7.9568 -6.1594 4.2393 48 1 9.4083 -5.5659 3.3216 49 1 6.2955 -4.7864 8.5263 50 1 4.0145 -4.1098 9.6196 51 1 3.6531 -0.1134 4.0692 52 1 2.8320 1.0431 2.0575 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_4549634.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:42:26 Heat of formation + Delta-G solvation = 73.589582 kcal Electronic energy + Delta-G solvation = -37753.541771 eV Core-core repulsion = 32690.466227 eV Total energy + Delta-G solvation = -5063.075545 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.167 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -43.76734 -42.97384 -41.34439 -41.22801 -39.50498 -39.23440 -37.32770 -35.46425 -34.43043 -33.54809 -32.83958 -32.14929 -32.01798 -31.43449 -29.20884 -27.91062 -26.74431 -26.23608 -25.32224 -24.13668 -23.82216 -22.93017 -22.61291 -22.39126 -22.17020 -21.07795 -20.13584 -19.54552 -19.27581 -18.42276 -18.26058 -17.54120 -17.26600 -17.19474 -17.01823 -16.79276 -16.74539 -16.41462 -16.15167 -15.98581 -15.91952 -15.83270 -15.61490 -15.34245 -15.07307 -14.94568 -14.74375 -14.61252 -14.41108 -14.24359 -13.96965 -13.77610 -13.65601 -13.48184 -13.47222 -13.29391 -13.12411 -12.76670 -12.34749 -12.18015 -12.13649 -12.09540 -11.76177 -11.63531 -11.42820 -11.21316 -11.01676 -10.96252 -10.77665 -10.59859 -10.50427 -10.17057 -10.08149 -9.87079 -9.28541 -4.91962 -0.08510 0.23614 0.26678 0.70903 0.97982 1.31590 1.46308 1.47233 1.58748 1.94513 2.00710 2.01915 2.06032 2.43077 2.60713 3.29977 3.37749 3.43430 3.46541 3.48474 3.54793 3.55582 3.64911 3.67571 3.75938 3.80409 3.87677 3.90302 3.94617 4.07904 4.16622 4.20271 4.26369 4.38879 4.41110 4.48788 4.52649 4.53066 4.53922 4.66764 4.69344 4.75207 4.75818 4.83270 4.92730 4.95683 5.02108 5.11369 5.14896 5.21466 5.22420 5.32158 5.44500 5.46752 5.52900 5.65836 5.83837 5.95685 6.22612 6.37682 6.49072 7.05076 7.14190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.078 4.078 3 Si 0.765 3.235 4 C -0.157 4.157 5 C -0.057 4.057 6 C -0.164 4.164 7 C 0.124 3.876 8 O -0.324 6.324 9 C 0.135 3.865 10 C 0.041 3.959 11 C -0.225 4.225 12 C 0.586 3.414 13 O -0.567 6.567 14 N -0.694 5.694 15 C 0.112 3.888 16 H 0.095 0.905 17 C -0.115 4.115 18 C -0.115 4.115 19 H 0.085 0.915 20 C 0.131 3.869 21 N -0.376 5.376 22 C 0.255 3.745 23 N -0.586 5.586 24 C 0.185 3.815 25 N -0.347 5.347 26 C -0.145 4.145 27 C -0.199 4.199 28 C -0.011 4.011 29 O -0.177 6.177 30 C -0.205 4.205 31 C -0.077 4.077 32 H 0.385 0.615 33 H 0.124 0.876 34 H -0.302 1.302 35 H -0.280 1.280 36 H 0.140 0.860 37 H 0.131 0.869 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.412 0.588 41 H 0.126 0.874 42 H 0.087 0.913 43 H 0.139 0.861 44 H 0.102 0.898 45 H 0.256 0.744 46 H 0.231 0.769 47 H 0.042 0.958 48 H 0.112 0.888 49 H 0.188 0.812 50 H 0.252 0.748 51 H 0.148 0.852 52 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.956 2.493 3.942 8.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.187 4.187 3 Si 0.670 3.330 4 C -0.157 4.157 5 C -0.075 4.075 6 C -0.182 4.182 7 C 0.079 3.921 8 O -0.238 6.238 9 C 0.061 3.939 10 C -0.012 4.012 11 C -0.229 4.229 12 C 0.375 3.625 13 O -0.447 6.447 14 N -0.344 5.344 15 C 0.007 3.993 16 H 0.113 0.887 17 C -0.154 4.154 18 C -0.134 4.134 19 H 0.103 0.897 20 C 0.011 3.989 21 N -0.166 5.166 22 C -0.042 4.042 23 N -0.314 5.314 24 C -0.118 4.118 25 N -0.175 5.175 26 C -0.184 4.184 27 C -0.218 4.218 28 C -0.077 4.077 29 O -0.073 6.073 30 C -0.223 4.223 31 C -0.094 4.094 32 H 0.235 0.765 33 H 0.142 0.858 34 H -0.230 1.230 35 H -0.206 1.206 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.129 0.871 39 H 0.118 0.882 40 H 0.249 0.751 41 H 0.145 0.855 42 H 0.105 0.895 43 H 0.156 0.844 44 H 0.120 0.880 45 H 0.272 0.728 46 H 0.247 0.753 47 H 0.061 0.939 48 H 0.130 0.870 49 H 0.205 0.795 50 H 0.268 0.732 51 H 0.166 0.834 52 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.361 3.376 3.330 7.934 hybrid contribution -1.130 -0.648 0.963 1.620 sum 5.230 2.728 4.293 7.296 Atomic orbital electron populations 1.86569 1.18634 1.80407 1.50121 1.25176 0.83323 1.11816 0.98393 0.94050 0.90415 0.72055 0.76474 1.20274 1.02548 0.94891 0.98008 1.20956 0.96568 0.93959 0.96023 1.20624 1.02316 1.01039 0.94249 1.19184 0.94489 0.91785 0.86595 1.86050 1.69127 1.39146 1.29516 1.21159 0.98309 0.90673 0.83757 1.22081 0.90726 1.00291 0.88069 1.21391 0.97360 1.05527 0.98669 1.17391 0.81661 0.78604 0.84868 1.90772 1.80107 1.46248 1.27606 1.45383 1.17958 1.48547 1.22553 1.21929 0.87326 0.98816 0.91247 0.88732 1.23298 0.96096 0.92608 1.03362 1.22865 0.96272 0.95410 0.98872 0.89654 1.22271 0.97167 0.73390 1.06074 1.50748 1.45659 1.12777 1.07428 1.26849 0.95814 0.85934 0.95562 1.70542 1.21779 1.23492 1.15617 1.26434 0.98774 0.96346 0.90248 1.77920 1.20702 1.05280 1.13647 1.23604 0.99583 0.96117 0.99087 1.23226 1.00703 1.04600 0.93251 1.24895 0.92763 0.92807 0.97211 1.83795 1.44862 1.53630 1.25000 1.21407 1.06211 0.93237 1.01449 1.21056 0.95633 1.00292 0.92427 0.76540 0.85836 1.23008 1.20618 0.84241 0.85092 0.87140 0.88194 0.75132 0.85538 0.89471 0.84360 0.88014 0.72827 0.75322 0.93919 0.87018 0.79468 0.73238 0.83408 0.83341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.18 12.83 -148.98 -1.91 -4.10 16 2 C -0.08 -0.08 2.80 71.23 0.20 0.12 16 3 Si 0.76 -0.73 29.88 68.60 2.05 1.32 16 4 C -0.16 -0.41 5.35 -19.85 -0.11 -0.51 16 5 C -0.06 -0.25 9.68 22.25 0.22 -0.04 16 6 C -0.16 -1.13 9.99 22.37 0.22 -0.91 16 7 C 0.12 0.95 6.69 22.51 0.15 1.10 16 8 O -0.32 -3.11 10.12 -92.45 -0.94 -4.05 16 9 C 0.14 0.67 4.74 71.24 0.34 1.00 16 10 C 0.04 0.23 7.00 25.26 0.18 0.40 16 11 C -0.22 -0.92 6.31 -18.99 -0.12 -1.04 16 12 C 0.59 3.44 7.81 86.65 0.68 4.11 16 13 O -0.57 -6.91 14.47 -4.09 -0.06 -6.97 16 14 N -0.69 0.67 5.26 -443.33 -2.33 -1.67 16 15 C 0.11 -0.38 4.29 45.52 0.20 -0.18 16 16 H 0.09 -0.01 7.50 -2.39 -0.02 -0.03 16 17 C -0.12 1.16 7.38 31.12 0.23 1.39 16 18 C -0.11 0.83 3.77 -10.17 -0.04 0.79 16 19 H 0.09 -0.23 8.01 -2.39 -0.02 -0.25 16 20 C 0.13 -1.18 6.39 86.38 0.55 -0.63 16 21 N -0.38 0.40 3.69 -352.05 -1.30 -0.90 16 22 C 0.25 -0.27 12.63 180.36 2.28 2.01 16 23 N -0.59 -3.51 11.19 -203.99 -2.28 -5.79 16 24 C 0.18 0.93 13.03 180.76 2.36 3.28 16 25 N -0.35 -1.76 12.46 -61.24 -0.76 -2.52 16 26 C -0.15 0.59 7.45 31.21 0.23 0.82 16 27 C -0.20 0.53 10.60 23.64 0.25 0.78 16 28 C -0.01 0.04 12.03 66.89 0.80 0.84 16 29 O -0.18 -0.56 10.52 4.47 0.05 -0.51 16 30 C -0.20 -0.72 9.04 22.36 0.20 -0.52 16 31 C -0.08 -0.12 8.66 22.25 0.19 0.08 16 32 H 0.39 -0.60 8.70 -74.06 -0.64 -1.25 16 33 H 0.12 -0.07 7.96 -2.38 -0.02 -0.09 16 34 H -0.30 -1.99 7.11 99.48 0.71 -1.28 16 35 H -0.28 -0.60 7.01 99.48 0.70 0.09 16 36 H 0.14 0.33 8.06 -2.91 -0.02 0.31 16 37 H 0.13 0.79 8.06 -2.91 -0.02 0.77 16 38 H 0.11 0.60 6.02 -2.39 -0.01 0.58 16 39 H 0.10 0.02 7.65 -2.39 -0.02 0.00 16 40 H 0.41 -2.22 7.88 -92.71 -0.73 -2.95 16 41 H 0.13 -1.81 8.10 -2.39 -0.02 -1.83 16 42 H 0.09 -0.91 8.14 -2.38 -0.02 -0.93 16 43 H 0.14 -2.17 7.79 -2.39 -0.02 -2.19 16 44 H 0.10 -1.04 8.14 -2.38 -0.02 -1.06 16 45 H 0.26 -2.80 8.06 -2.91 -0.02 -2.82 16 46 H 0.23 -0.15 8.06 -2.91 -0.02 -0.17 16 47 H 0.04 0.11 8.14 -2.38 -0.02 0.09 16 48 H 0.11 -0.85 7.90 -2.39 -0.02 -0.87 16 49 H 0.19 -1.72 7.74 -2.91 -0.02 -1.74 16 50 H 0.25 -3.13 8.06 -2.91 -0.02 -3.16 16 51 H 0.15 -0.10 6.30 -2.91 -0.02 -0.12 16 52 H 0.15 -0.45 4.84 -2.91 -0.01 -0.46 16 Total: 0.00 -32.80 441.27 1.18 -31.63 By element: Atomic # 1 Polarization: -19.00 SS G_CDS: -0.35 Total: -19.35 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 9.01 Total: 12.90 kcal Atomic # 7 Polarization: -4.19 SS G_CDS: -6.68 Total: -10.87 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -2.86 Total: -15.63 kcal Atomic # 14 Polarization: -0.73 SS G_CDS: 2.05 Total: 1.32 kcal Total: -32.80 1.18 -31.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_4549634.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.219 kcal (2) G-P(sol) polarization free energy of solvation -32.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds