Wall clock time and date at job start Sun Mar 7 2021 04:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.36001 * 117.00645 * 2 1 4 4 C 1.39150 * 120.07311 * 180.02562 * 3 2 1 5 5 O 1.35987 * 120.07552 * 0.04094 * 4 3 2 6 6 C 1.42902 * 116.99915 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47132 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00064 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00019 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99860 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.85092 * 25.33139 * 10 9 7 12 12 C 1.53778 * 113.61296 * 156.52975 * 10 9 7 13 13 C 1.53779 * 87.08262 * 89.11436 * 12 10 9 14 14 H 1.08993 * 113.61759 * 270.88661 * 13 12 10 15 15 C 1.53004 * 113.61337 * 140.06253 * 13 12 10 16 16 N 1.46505 * 109.46885 * 175.00233 * 15 13 12 17 17 C 1.34426 * 126.82142 * 124.99893 * 16 15 13 18 18 N 1.30835 * 108.07870 * 179.97438 * 17 16 15 19 19 C 1.33246 * 109.82579 * 0.02562 * 18 17 16 20 20 N 1.30719 * 108.94664 * 359.75099 * 19 18 17 21 21 C 1.53781 * 113.61578 * 254.13814 * 10 9 7 22 22 C 1.38570 * 119.84988 * 180.02562 * 4 3 2 23 23 C 1.38238 * 119.99772 * 0.28222 * 22 4 3 24 24 N 1.48012 * 119.92547 * 179.72266 * 23 22 4 25 25 O 1.21795 * 119.99772 * 359.97438 * 24 23 22 26 26 O 1.21800 * 119.99808 * 179.97438 * 24 23 22 27 27 C 1.38255 * 120.15035 * 359.43655 * 23 22 4 28 28 C 1.50696 * 119.93031 * 180.28539 * 27 23 22 29 29 O 1.42901 * 109.47227 * 75.27588 * 28 27 23 30 30 Si 1.86302 * 109.47260 * 195.27767 * 28 27 23 31 31 C 1.38247 * 120.14202 * 0.55875 * 27 23 22 32 32 H 1.09004 * 109.47528 * 59.99488 * 1 2 3 33 33 H 1.08995 * 109.48026 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47338 * 300.00459 * 1 2 3 35 35 H 1.08998 * 109.47635 * 300.00056 * 6 5 4 36 36 H 1.09004 * 109.46842 * 60.00418 * 6 5 4 37 37 H 0.96991 * 119.99943 * 0.02562 * 9 7 6 38 38 H 1.09002 * 113.61254 * 203.66234 * 12 10 9 39 39 H 1.09000 * 113.61803 * 334.47918 * 12 10 9 40 40 H 1.08999 * 109.46967 * 294.99848 * 15 13 12 41 41 H 1.08990 * 109.47198 * 55.00289 * 15 13 12 42 42 H 1.08004 * 125.96325 * 0.02562 * 17 16 15 43 43 H 1.07998 * 125.52801 * 179.97438 * 19 18 17 44 44 H 1.09000 * 113.61260 * 25.43114 * 21 10 9 45 45 H 1.08992 * 113.61930 * 156.33699 * 21 10 9 46 46 H 1.08002 * 119.99648 * 179.97438 * 22 4 3 47 47 H 1.09000 * 109.46772 * 315.27733 * 28 27 23 48 48 H 0.96704 * 113.99897 * 60.00515 * 29 28 27 49 49 H 1.48505 * 109.99884 * 58.68036 * 30 28 27 50 50 H 1.48494 * 110.00187 * 179.97438 * 30 28 27 51 51 H 1.08000 * 119.99732 * 179.69503 * 31 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2861 -0.0005 5 8 4.1794 0.1475 -0.0019 6 6 5.6003 0.3004 -0.0030 7 6 6.2517 -1.0585 -0.0038 8 8 5.5668 -2.0593 -0.0039 9 7 7.5956 -1.1615 -0.0043 10 6 8.2289 -2.4826 -0.0056 11 1 7.5931 -3.2564 -0.4359 12 6 9.6605 -2.4788 -0.5673 13 6 10.1380 -2.1925 0.8662 14 1 10.1887 -1.1304 1.1055 15 6 11.4107 -2.9497 1.2509 16 7 11.8495 -2.5224 2.5818 17 6 12.0811 -3.3111 3.6455 18 7 12.4567 -2.5499 4.6412 19 6 12.4761 -1.2753 4.2533 20 7 12.1167 -1.2080 2.9983 21 6 8.8429 -2.8728 1.3492 22 6 4.0604 2.5232 0.0000 23 6 3.3031 3.6797 0.0070 24 7 3.9717 5.0001 0.0137 25 8 5.1879 5.0669 0.0136 26 8 3.3058 6.0199 0.0194 27 6 1.9225 3.6057 0.0017 28 6 1.1018 4.8696 0.0028 29 8 1.1344 5.4599 -1.2982 30 14 -0.6591 4.4662 0.4578 31 6 1.2933 2.3747 0.0010 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3635 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 5.9059 0.8508 -0.8928 36 1 5.9072 0.8496 0.8872 37 1 8.1434 -0.3611 -0.0038 38 1 9.9821 -3.4477 -0.9493 39 1 9.8539 -1.6636 -1.2645 40 1 11.2070 -4.0204 1.2619 41 1 12.1942 -2.7362 0.5241 42 1 11.9764 -4.3857 3.6731 43 1 12.7484 -0.4345 4.8740 44 1 8.3772 -2.3744 2.1994 45 1 8.9415 -3.9491 1.4902 46 1 5.1387 2.5837 0.0000 47 1 1.5138 5.5695 0.7298 48 1 0.7821 4.8916 -1.9969 49 1 -0.7034 3.8227 1.7955 50 1 -1.4788 5.7044 0.4631 51 1 0.2147 2.3197 0.0018 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_4549636.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:42:31 Heat of formation + Delta-G solvation = 29.954355 kcal Electronic energy + Delta-G solvation = -40058.047415 eV Core-core repulsion = 34546.741690 eV Total energy + Delta-G solvation = -5511.305724 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 420.161 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -43.43421 -42.98578 -42.15999 -41.41754 -40.17931 -39.34536 -39.08361 -37.76708 -37.15378 -35.48099 -34.03735 -32.70553 -32.55298 -32.16054 -30.20941 -28.96263 -28.57391 -27.93471 -26.75612 -25.87972 -24.67707 -23.88029 -23.25076 -22.93528 -22.43004 -22.08533 -20.82764 -20.25098 -19.88618 -19.53657 -18.84923 -18.71116 -18.44779 -18.21171 -17.81029 -17.72470 -17.39477 -17.04460 -16.88067 -16.73965 -16.42412 -16.11246 -15.97047 -15.93256 -15.71155 -15.43528 -15.15623 -14.97063 -14.95541 -14.74759 -14.40730 -14.03097 -13.92889 -13.80818 -13.51799 -13.48374 -13.30091 -13.05096 -12.79661 -12.69491 -12.53032 -12.46448 -12.35635 -12.30595 -12.22684 -12.16216 -11.80666 -11.77805 -11.43747 -11.16486 -10.97180 -10.78859 -10.55243 -10.52117 -10.48784 -10.21336 -9.52446 -5.14995 -1.39702 -0.46650 0.13108 0.27472 0.69884 1.11282 1.18150 1.30434 1.45621 1.56170 1.86401 1.87373 1.92751 2.00817 2.28294 2.95305 3.14172 3.23460 3.36237 3.40439 3.44918 3.46872 3.49957 3.53810 3.53982 3.74472 3.82165 3.89238 3.90748 3.93944 4.02516 4.08825 4.15773 4.19860 4.20403 4.37727 4.40324 4.49069 4.52284 4.52716 4.64881 4.70449 4.74030 4.79692 4.80835 4.94144 5.00858 5.11919 5.22025 5.31264 5.45505 5.45974 5.56593 5.94744 6.03086 6.29978 6.43379 6.70125 6.99205 7.13266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.307 6.307 3 C 0.172 3.828 4 C 0.099 3.901 5 O -0.289 6.289 6 C 0.026 3.974 7 C 0.520 3.480 8 O -0.562 6.562 9 N -0.696 5.696 10 C 0.112 3.888 11 H 0.092 0.908 12 C -0.116 4.116 13 C -0.116 4.116 14 H 0.088 0.912 15 C 0.130 3.870 16 N -0.376 5.376 17 C 0.255 3.745 18 N -0.586 5.586 19 C 0.185 3.815 20 N -0.346 5.346 21 C -0.145 4.145 22 C -0.111 4.111 23 C -0.046 4.046 24 N 0.035 4.965 25 O -0.189 6.189 26 O -0.163 6.163 27 C -0.039 4.039 28 C -0.093 4.093 29 O -0.536 6.536 30 Si 0.789 3.211 31 C -0.162 4.162 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.079 0.921 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.418 0.582 38 H 0.124 0.876 39 H 0.089 0.911 40 H 0.138 0.862 41 H 0.101 0.899 42 H 0.256 0.744 43 H 0.230 0.770 44 H 0.047 0.953 45 H 0.110 0.890 46 H 0.181 0.819 47 H 0.115 0.885 48 H 0.393 0.607 49 H -0.272 1.272 50 H -0.290 1.290 51 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.427 -7.484 -4.762 9.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.218 6.218 3 C 0.124 3.876 4 C 0.052 3.948 5 O -0.202 6.202 6 C -0.051 4.051 7 C 0.306 3.694 8 O -0.439 6.439 9 N -0.350 5.350 10 C 0.007 3.993 11 H 0.110 0.890 12 C -0.154 4.154 13 C -0.135 4.135 14 H 0.107 0.893 15 C 0.010 3.990 16 N -0.166 5.166 17 C -0.042 4.042 18 N -0.314 5.314 19 C -0.118 4.118 20 N -0.175 5.175 21 C -0.184 4.184 22 C -0.131 4.131 23 C -0.131 4.131 24 N 0.548 4.452 25 O -0.399 6.399 26 O -0.378 6.378 27 C -0.041 4.041 28 C -0.201 4.201 29 O -0.343 6.343 30 Si 0.690 3.310 31 C -0.181 4.181 32 H 0.113 0.887 33 H 0.140 0.860 34 H 0.098 0.902 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.255 0.745 38 H 0.142 0.858 39 H 0.107 0.893 40 H 0.156 0.844 41 H 0.119 0.881 42 H 0.272 0.728 43 H 0.246 0.754 44 H 0.066 0.934 45 H 0.128 0.872 46 H 0.198 0.802 47 H 0.132 0.868 48 H 0.242 0.758 49 H -0.198 1.198 50 H -0.217 1.217 51 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -3.550 -8.097 -4.067 9.731 hybrid contribution 1.249 1.376 0.489 1.922 sum -2.301 -6.721 -3.578 7.954 Atomic orbital electron populations 1.23823 0.74622 1.07130 1.04221 1.86332 1.24914 1.24436 1.86150 1.18661 0.89067 0.86445 0.93474 1.17967 0.88883 0.85045 1.02888 1.86296 1.18291 1.26818 1.88752 1.22888 0.78977 0.96162 1.07090 1.20258 0.83008 0.90372 0.75807 1.90777 1.63812 1.39649 1.49710 1.45420 1.05114 1.10027 1.74421 1.21910 0.94745 0.84838 0.97791 0.89032 1.23296 0.91679 1.05394 0.95065 1.22888 0.92645 1.00370 0.97616 0.89344 1.22272 0.96884 1.01274 0.78553 1.50752 1.49124 1.04029 1.12701 1.26844 0.94223 1.01025 0.82063 1.70547 1.25841 1.03099 1.31962 1.26429 0.98078 0.95877 0.91406 1.77927 1.24498 0.99966 1.15120 1.23605 0.95891 1.02188 0.96704 1.20890 1.02921 0.88263 1.00981 1.20560 0.92799 0.81863 1.17847 1.43730 1.00827 1.03462 0.97155 1.94506 0.96537 1.94135 1.54728 1.94571 1.64376 1.25435 1.53399 1.20241 0.90995 0.97739 0.95155 1.25795 1.10696 0.92739 0.90834 1.86669 1.87107 1.44575 1.15956 0.94399 0.71648 0.82148 0.82757 1.21095 1.01814 0.88034 1.07130 0.88746 0.86009 0.90210 0.85297 0.86015 0.74463 0.85787 0.89261 0.84428 0.88120 0.72835 0.75380 0.93402 0.87197 0.80205 0.86806 0.75766 1.19789 1.21732 0.78836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 9.81 113.37 1.11 1.16 16 2 O -0.31 0.17 10.28 -79.69 -0.82 -0.65 16 3 C 0.17 -0.19 6.70 22.57 0.15 -0.03 16 4 C 0.10 0.09 6.70 22.57 0.15 0.24 16 5 O -0.29 -1.01 9.45 -66.99 -0.63 -1.64 16 6 C 0.03 -0.10 5.22 71.24 0.37 0.27 16 7 C 0.52 0.70 7.91 87.66 0.69 1.39 16 8 O -0.56 -6.69 16.12 16.01 0.26 -6.43 16 9 N -0.70 3.53 5.26 -440.03 -2.32 1.22 16 10 C 0.11 -0.60 4.29 45.52 0.20 -0.41 16 11 H 0.09 -0.12 7.50 -2.39 -0.02 -0.13 16 12 C -0.12 1.32 7.38 31.12 0.23 1.55 16 13 C -0.12 0.99 3.77 -10.17 -0.04 0.96 16 14 H 0.09 -0.40 8.01 -2.39 -0.02 -0.42 16 15 C 0.13 -1.26 6.39 86.38 0.55 -0.71 16 16 N -0.38 0.63 3.69 -352.05 -1.30 -0.67 16 17 C 0.25 -0.40 12.63 180.36 2.28 1.87 16 18 N -0.59 -3.27 11.19 -203.99 -2.28 -5.56 16 19 C 0.18 0.87 13.03 180.76 2.36 3.22 16 20 N -0.35 -1.60 12.46 -61.24 -0.76 -2.36 16 21 C -0.15 0.86 7.45 31.22 0.23 1.10 16 22 C -0.11 -0.01 8.54 22.35 0.19 0.19 16 23 C -0.05 -0.18 6.85 36.38 0.25 0.07 16 24 N 0.04 0.36 4.45 -46.46 -0.21 0.15 16 25 O -0.19 -2.17 18.44 18.89 0.35 -1.82 16 26 O -0.16 -2.17 14.63 25.05 0.37 -1.81 16 27 C -0.04 0.01 5.26 -19.86 -0.10 -0.09 16 28 C -0.09 -0.02 1.74 71.23 0.12 0.10 16 29 O -0.54 -0.67 11.83 -129.81 -1.54 -2.20 16 30 Si 0.79 -4.17 29.91 68.60 2.05 -2.12 16 31 C -0.16 0.85 7.65 22.35 0.17 1.02 16 32 H 0.09 -1.46 7.67 -2.39 -0.02 -1.48 16 33 H 0.12 -1.44 8.14 -2.39 -0.02 -1.46 16 34 H 0.08 -1.05 7.66 -2.38 -0.02 -1.07 16 35 H 0.13 -1.25 7.66 -2.39 -0.02 -1.27 16 36 H 0.12 -1.04 7.66 -2.38 -0.02 -1.06 16 37 H 0.42 -4.45 8.70 -92.72 -0.81 -5.25 16 38 H 0.12 -1.86 8.10 -2.39 -0.02 -1.88 16 39 H 0.09 -1.07 8.14 -2.39 -0.02 -1.09 16 40 H 0.14 -2.24 7.80 -2.39 -0.02 -2.25 16 41 H 0.10 -1.07 8.14 -2.39 -0.02 -1.09 16 42 H 0.26 -2.93 8.06 -2.91 -0.02 -2.95 16 43 H 0.23 -0.17 8.06 -2.91 -0.02 -0.20 16 44 H 0.05 -0.02 8.14 -2.39 -0.02 -0.04 16 45 H 0.11 -0.98 7.91 -2.39 -0.02 -1.00 16 46 H 0.18 -0.73 5.85 -2.91 -0.02 -0.75 16 47 H 0.11 0.59 6.04 -2.39 -0.01 0.58 16 48 H 0.39 -3.48 8.70 -74.05 -0.64 -4.13 16 49 H -0.27 0.51 7.11 99.48 0.71 1.22 16 50 H -0.29 -0.80 7.11 99.48 0.71 -0.10 16 51 H 0.20 -2.46 3.36 -2.91 -0.01 -2.47 16 Total: 0.00 -41.99 434.56 1.71 -40.28 By element: Atomic # 1 Polarization: -27.91 SS G_CDS: -0.37 Total: -28.28 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: 8.91 Total: 11.90 kcal Atomic # 7 Polarization: -0.35 SS G_CDS: -6.87 Total: -7.21 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -2.02 Total: -14.56 kcal Atomic # 14 Polarization: -4.17 SS G_CDS: 2.05 Total: -2.12 kcal Total: -41.99 1.71 -40.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_4549636.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.234 kcal (2) G-P(sol) polarization free energy of solvation -41.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds