Wall clock time and date at job start Sun Mar 7 2021 04:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42892 * 1 3 3 Si 1.86298 * 109.47605 * 2 1 4 4 C 1.50702 * 109.47242 * 120.00115 * 2 1 3 5 5 C 1.38249 * 119.94432 * 244.72773 * 4 2 1 6 6 C 1.38165 * 120.05444 * 179.71989 * 5 4 2 7 7 C 1.38711 * 119.94530 * 0.55028 * 6 5 4 8 8 O 1.35900 * 120.05923 * 179.74517 * 7 6 5 9 9 C 1.42897 * 116.99739 * 359.97438 * 8 7 6 10 10 C 1.50693 * 109.47216 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00030 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00363 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00390 * 179.97438 * 12 10 9 14 14 H 1.09006 * 112.84562 * 336.19204 * 13 12 10 15 15 C 1.53778 * 113.61771 * 107.49743 * 13 12 10 16 16 C 1.53774 * 87.08044 * 89.11559 * 15 13 12 17 17 H 1.09003 * 113.61733 * 270.88249 * 16 15 13 18 18 C 1.53006 * 113.69015 * 139.99338 * 16 15 13 19 19 N 1.46498 * 109.46912 * 87.46394 * 18 16 15 20 20 C 1.34432 * 126.81779 * 124.71421 * 19 18 16 21 21 N 1.30830 * 108.07408 * 179.89349 * 20 19 18 22 22 C 1.33244 * 109.83163 * 0.37812 * 21 20 19 23 23 N 1.30716 * 108.94562 * 359.76474 * 22 21 20 24 24 C 1.53773 * 113.61757 * 204.99831 * 13 12 10 25 25 C 1.38760 * 119.88618 * 359.72410 * 7 6 5 26 26 N 1.48004 * 120.02514 * 179.97438 * 25 7 6 27 27 O 1.21795 * 119.99541 * 180.02562 * 26 25 7 28 28 O 1.21802 * 119.99984 * 0.02562 * 26 25 7 29 29 C 1.38122 * 119.94618 * 0.02562 * 25 7 6 30 30 H 0.96703 * 114.00176 * 60.00012 * 1 2 3 31 31 H 1.09000 * 109.47224 * 239.99764 * 2 1 3 32 32 H 1.48506 * 109.99834 * 298.68369 * 3 2 1 33 33 H 1.48502 * 110.00011 * 59.99633 * 3 2 1 34 34 H 1.07998 * 119.97064 * 359.97438 * 5 4 2 35 35 H 1.08002 * 120.02939 * 180.29427 * 6 5 4 36 36 H 1.09003 * 109.47459 * 300.00051 * 9 8 7 37 37 H 1.09007 * 109.47291 * 59.99661 * 9 8 7 38 38 H 0.97000 * 119.99690 * 359.97438 * 12 10 9 39 39 H 1.09006 * 113.61687 * 203.67063 * 15 13 12 40 40 H 1.09006 * 113.61053 * 334.56629 * 15 13 12 41 41 H 1.08997 * 109.47054 * 207.46748 * 18 16 15 42 42 H 1.08999 * 109.46992 * 327.46943 * 18 16 15 43 43 H 1.08003 * 125.96604 * 0.03640 * 20 19 18 44 44 H 1.08000 * 125.53181 * 179.79845 * 22 21 20 45 45 H 1.08997 * 113.61649 * 25.42725 * 24 13 12 46 46 H 1.08998 * 113.61884 * 156.24839 * 24 13 12 47 47 H 1.08000 * 119.97515 * 180.02562 * 29 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6435 -0.0124 2.1879 6 6 3.1002 -0.6601 3.3196 7 6 2.8534 -2.0145 3.4893 8 8 3.3059 -2.6551 4.5991 9 6 4.0296 -1.8719 5.5504 10 6 4.4490 -2.7451 6.7048 11 8 4.1565 -3.9220 6.7124 12 7 5.1482 -2.2178 7.7294 13 6 5.5554 -3.0665 8.8519 14 1 4.9234 -3.9471 8.9677 15 6 7.0609 -3.3793 8.8733 16 6 7.2349 -2.0998 9.7083 17 1 7.3911 -1.2039 9.1072 18 6 8.2526 -2.2393 10.8422 19 7 9.5915 -1.9239 10.3382 20 6 10.4419 -1.0061 10.8299 21 7 11.5305 -1.0317 10.1047 22 6 11.4097 -1.9430 9.1401 23 7 10.2393 -2.5160 9.2417 24 6 5.7778 -2.2914 10.1612 25 6 2.1432 -2.7141 2.5241 26 7 1.8786 -4.1595 2.7018 27 8 1.2556 -4.7731 1.8540 28 8 2.2839 -4.7351 3.6957 29 6 1.6843 -2.0609 1.3970 30 1 -0.3934 0.4417 -0.7651 31 1 1.7923 -0.5139 -0.8900 32 1 1.5879 2.4585 -1.2243 33 1 1.5615 2.4679 1.2085 34 1 2.8395 1.0411 2.0531 35 1 3.6524 -0.1133 4.0696 36 1 4.9146 -1.4491 5.0749 37 1 3.3936 -1.0658 5.9164 38 1 5.3818 -1.2764 7.7235 39 1 7.3097 -4.2917 9.4153 40 1 7.5316 -3.3274 7.8914 41 1 7.9959 -1.5510 11.6475 42 1 8.2380 -3.2617 11.2197 43 1 10.2593 -0.3618 11.6772 44 1 12.1578 -2.1717 8.3955 45 1 5.2127 -1.3612 10.2193 46 1 5.6744 -2.9060 11.0555 47 1 1.1312 -2.6049 0.6457 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_4549638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:42:36 Heat of formation + Delta-G solvation = 59.354943 kcal Electronic energy + Delta-G solvation = -35063.832716 eV Core-core repulsion = 30028.021708 eV Total energy + Delta-G solvation = -5035.811008 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 390.146 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.31699 -42.94414 -41.84717 -41.17957 -39.89650 -39.06335 -37.64593 -37.51129 -35.44023 -34.01859 -33.50023 -32.37779 -32.12113 -30.22138 -28.71300 -27.83593 -26.70728 -26.56781 -24.73052 -24.00653 -22.82905 -22.80409 -22.37158 -22.00917 -20.53752 -20.30469 -19.80129 -19.11771 -18.74440 -18.64180 -18.52037 -18.11931 -17.62156 -17.47856 -16.91146 -16.73426 -16.51258 -16.13822 -15.91859 -15.81913 -15.67573 -15.42903 -15.19036 -15.07030 -14.63833 -14.39724 -14.18616 -14.05292 -13.87357 -13.77522 -13.46956 -13.17273 -13.10630 -12.81381 -12.73210 -12.71248 -12.37814 -12.29363 -12.19169 -12.13077 -11.88954 -11.71460 -11.25049 -11.08263 -10.93300 -10.85646 -10.75624 -10.60204 -10.52716 -10.16681 -9.81380 -4.93265 -1.32822 -0.26402 0.13917 0.32862 0.74772 1.16838 1.24831 1.39822 1.49936 1.61335 1.95208 2.00643 2.04881 2.27859 3.04582 3.19594 3.28569 3.33051 3.47539 3.53280 3.56413 3.57477 3.67367 3.68120 3.78087 3.82850 3.91141 3.97003 4.01201 4.15786 4.20752 4.25714 4.30797 4.46844 4.49202 4.60253 4.61642 4.69322 4.78142 4.83425 4.84561 5.00674 5.05433 5.05587 5.14699 5.16883 5.36037 5.49413 5.53972 5.72990 5.99404 6.39396 6.41293 6.52325 7.11318 7.17878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.095 4.095 3 Si 0.785 3.215 4 C -0.111 4.111 5 C -0.008 4.008 6 C -0.189 4.189 7 C 0.193 3.807 8 O -0.291 6.291 9 C 0.025 3.975 10 C 0.510 3.490 11 O -0.564 6.564 12 N -0.691 5.691 13 C 0.108 3.892 14 H 0.080 0.920 15 C -0.140 4.140 16 C -0.107 4.107 17 H 0.097 0.903 18 C 0.129 3.871 19 N -0.377 5.377 20 C 0.256 3.744 21 N -0.586 5.586 22 C 0.183 3.817 23 N -0.344 5.344 24 C -0.113 4.113 25 C -0.104 4.104 26 N 0.035 4.965 27 O -0.199 6.199 28 O -0.174 6.174 29 C -0.003 4.003 30 H 0.399 0.601 31 H 0.098 0.902 32 H -0.291 1.291 33 H -0.277 1.277 34 H 0.185 0.815 35 H 0.207 0.793 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.421 0.579 39 H 0.086 0.914 40 H 0.050 0.950 41 H 0.145 0.855 42 H 0.092 0.908 43 H 0.259 0.741 44 H 0.228 0.772 45 H 0.100 0.900 46 H 0.115 0.885 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.276 15.164 3.400 15.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.201 4.201 3 Si 0.687 3.313 4 C -0.113 4.113 5 C -0.025 4.025 6 C -0.207 4.207 7 C 0.143 3.857 8 O -0.201 6.201 9 C -0.052 4.052 10 C 0.295 3.705 11 O -0.441 6.441 12 N -0.345 5.345 13 C 0.003 3.997 14 H 0.098 0.902 15 C -0.179 4.179 16 C -0.126 4.126 17 H 0.116 0.884 18 C 0.009 3.991 19 N -0.168 5.168 20 C -0.040 4.040 21 N -0.314 5.314 22 C -0.120 4.120 23 N -0.172 5.172 24 C -0.151 4.151 25 C -0.189 4.189 26 N 0.545 4.455 27 O -0.407 6.407 28 O -0.388 6.388 29 C -0.023 4.023 30 H 0.250 0.750 31 H 0.116 0.884 32 H -0.218 1.218 33 H -0.203 1.203 34 H 0.202 0.798 35 H 0.223 0.777 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.259 0.741 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.163 0.837 42 H 0.110 0.890 43 H 0.275 0.725 44 H 0.244 0.756 45 H 0.119 0.881 46 H 0.133 0.867 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.980 14.863 3.544 15.568 hybrid contribution -1.298 -0.972 -0.719 1.774 sum 1.683 13.891 2.824 14.275 Atomic orbital electron populations 1.86545 1.18378 1.81018 1.51280 1.25223 0.84421 1.13133 0.97352 0.94166 0.89326 0.70243 0.77551 1.19449 1.01740 0.91539 0.98527 1.21696 0.89519 1.01601 0.89693 1.21771 1.06523 0.89986 1.02420 1.18943 0.89742 0.92132 0.84873 1.86468 1.67444 1.37869 1.28305 1.23112 1.00124 0.93787 0.88198 1.20509 0.77939 0.88048 0.83955 1.90849 1.55516 1.18840 1.78936 1.45287 1.55571 1.13965 1.19710 1.21910 0.95661 0.94990 0.87146 0.90224 1.23399 0.95314 0.98627 1.00533 1.22782 0.94629 0.98608 0.96578 0.88434 1.22265 0.75113 1.04717 0.97053 1.50774 1.15795 1.28063 1.22179 1.26904 0.85101 0.92607 0.99363 1.70546 1.26423 1.24814 1.09579 1.26415 0.95015 0.92319 0.98239 1.78034 1.09725 1.22879 1.06591 1.23268 0.93673 1.01984 0.96167 1.20838 1.15853 0.79854 1.02396 1.43861 0.97945 1.04187 0.99512 1.94491 1.40143 1.67878 1.38236 1.94680 1.53846 1.70815 1.19440 1.20862 0.92967 0.95126 0.93298 0.74964 0.88409 1.21811 1.20317 0.79821 0.77660 0.83915 0.83807 0.74075 0.89581 0.93126 0.83744 0.89012 0.72540 0.75624 0.88110 0.86669 0.82928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.94 12.81 -148.98 -1.91 -0.96 16 2 C -0.09 0.56 2.79 71.24 0.20 0.76 16 3 Si 0.78 -7.68 29.84 68.60 2.05 -5.63 16 4 C -0.11 0.34 5.39 -19.85 -0.11 0.24 16 5 C -0.01 0.07 8.66 22.25 0.19 0.26 16 6 C -0.19 1.65 9.04 22.37 0.20 1.85 16 7 C 0.19 0.42 6.67 22.51 0.15 0.57 16 8 O -0.29 -1.66 7.68 -63.40 -0.49 -2.14 16 9 C 0.02 -0.16 5.22 71.23 0.37 0.22 16 10 C 0.51 0.87 7.91 87.65 0.69 1.56 16 11 O -0.56 -8.87 16.10 16.02 0.26 -8.61 16 12 N -0.69 4.28 5.26 -440.06 -2.32 1.96 16 13 C 0.11 -0.43 4.32 45.51 0.20 -0.23 16 14 H 0.08 0.20 7.46 -2.38 -0.02 0.19 16 15 C -0.14 0.39 7.43 31.12 0.23 0.62 16 16 C -0.11 1.06 3.72 -10.27 -0.04 1.02 16 17 H 0.10 -0.95 8.14 -2.39 -0.02 -0.97 16 18 C 0.13 -1.36 6.39 86.38 0.55 -0.81 16 19 N -0.38 1.13 3.69 -352.06 -1.30 -0.17 16 20 C 0.26 -0.94 12.63 180.36 2.28 1.34 16 21 N -0.59 -2.25 11.19 -203.99 -2.28 -4.54 16 22 C 0.18 0.67 13.03 180.76 2.36 3.02 16 23 N -0.34 -1.38 12.57 -61.24 -0.77 -2.15 16 24 C -0.11 1.37 7.39 31.12 0.23 1.60 16 25 C -0.10 -0.89 6.87 36.48 0.25 -0.64 16 26 N 0.03 0.62 4.45 -46.24 -0.21 0.41 16 27 O -0.20 -3.86 18.45 18.89 0.35 -3.51 16 28 O -0.17 -3.96 17.24 25.60 0.44 -3.52 16 29 C 0.00 -0.01 9.19 22.25 0.20 0.19 16 30 H 0.40 -3.75 8.74 -74.06 -0.65 -4.39 16 31 H 0.10 -0.87 7.96 -2.39 -0.02 -0.89 16 32 H -0.29 1.06 7.11 99.48 0.71 1.77 16 33 H -0.28 1.48 7.05 99.48 0.70 2.18 16 34 H 0.19 -2.93 4.86 -2.91 -0.01 -2.95 16 35 H 0.21 -3.93 6.30 -2.91 -0.02 -3.95 16 36 H 0.14 -2.12 7.66 -2.39 -0.02 -2.13 16 37 H 0.14 -2.18 7.66 -2.38 -0.02 -2.20 16 38 H 0.42 -6.12 8.70 -92.71 -0.81 -6.93 16 39 H 0.09 -0.11 7.90 -2.38 -0.02 -0.13 16 40 H 0.05 0.13 8.14 -2.38 -0.02 0.11 16 41 H 0.14 -2.64 8.09 -2.39 -0.02 -2.66 16 42 H 0.09 -0.89 7.85 -2.39 -0.02 -0.91 16 43 H 0.26 -3.62 8.06 -2.91 -0.02 -3.64 16 44 H 0.23 -0.32 8.06 -2.91 -0.02 -0.34 16 45 H 0.10 -1.54 8.14 -2.39 -0.02 -1.56 16 46 H 0.12 -1.60 8.10 -2.39 -0.02 -1.62 16 47 H 0.15 0.70 7.61 -2.91 -0.02 0.68 16 Total: 0.00 -49.08 409.53 1.43 -47.65 By element: Atomic # 1 Polarization: -30.01 SS G_CDS: -0.35 Total: -30.36 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 7.96 Total: 11.58 kcal Atomic # 7 Polarization: 2.38 SS G_CDS: -6.87 Total: -4.49 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -1.35 Total: -18.75 kcal Atomic # 14 Polarization: -7.68 SS G_CDS: 2.05 Total: -5.63 kcal Total: -49.08 1.43 -47.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_4549638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.006 kcal (2) G-P(sol) polarization free energy of solvation -49.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds