Wall clock time and date at job start Sun Mar 7 2021 04:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86298 * 109.46907 * 2 1 4 4 C 1.50703 * 109.46889 * 240.00263 * 2 1 3 5 5 C 1.38264 * 119.94342 * 299.99787 * 4 2 1 6 6 C 1.38139 * 120.05601 * 179.97438 * 5 4 2 7 7 C 1.38741 * 119.94370 * 0.02562 * 6 5 4 8 8 O 1.35901 * 120.05503 * 180.02562 * 7 6 5 9 9 C 1.42899 * 116.99988 * 179.97438 * 8 7 6 10 10 F 1.39903 * 109.47083 * 59.99587 * 9 8 7 11 11 F 1.39898 * 109.47135 * 299.99841 * 9 8 7 12 12 C 1.50700 * 109.47143 * 179.97438 * 9 8 7 13 13 O 1.21283 * 119.99803 * 359.97438 * 12 9 8 14 14 N 1.34777 * 119.99675 * 180.27800 * 12 9 8 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 9 16 16 H 1.09001 * 112.85727 * 336.19659 * 15 14 12 17 17 C 1.53787 * 113.61668 * 107.50061 * 15 14 12 18 18 C 1.53786 * 87.08169 * 89.11277 * 17 15 14 19 19 H 1.09000 * 113.61405 * 270.88740 * 18 17 15 20 20 C 1.52993 * 113.68953 * 139.99418 * 18 17 15 21 21 N 1.46503 * 109.47194 * 87.46786 * 20 18 17 22 22 C 1.34423 * 126.82286 * 124.99807 * 21 20 18 23 23 N 1.30833 * 108.07769 * 179.97438 * 22 21 20 24 24 C 1.33246 * 109.82748 * 0.02562 * 23 22 21 25 25 N 1.30706 * 108.94591 * 359.75076 * 24 23 22 26 26 C 1.53784 * 113.61535 * 204.99648 * 15 14 12 27 27 C 1.38728 * 119.88705 * 0.26773 * 7 6 5 28 28 C 1.38141 * 119.94283 * 359.42907 * 27 7 6 29 29 H 0.96703 * 113.99836 * 299.99694 * 1 2 3 30 30 H 1.08995 * 109.47505 * 120.00078 * 2 1 3 31 31 H 1.48506 * 109.99868 * 178.68394 * 3 2 1 32 32 H 1.48496 * 110.00422 * 300.00115 * 3 2 1 33 33 H 1.07997 * 119.97376 * 359.97438 * 5 4 2 34 34 H 1.08001 * 120.02855 * 180.02562 * 6 5 4 35 35 H 0.97000 * 119.99894 * 359.71837 * 14 12 9 36 36 H 1.09001 * 113.61644 * 203.66224 * 17 15 14 37 37 H 1.09007 * 113.61035 * 334.56829 * 17 15 14 38 38 H 1.09002 * 109.47116 * 207.46548 * 20 18 17 39 39 H 1.08998 * 109.47274 * 327.46684 * 20 18 17 40 40 H 1.08001 * 125.96585 * 359.93312 * 22 21 20 41 41 H 1.07999 * 125.52397 * 179.97438 * 24 23 22 42 42 H 1.09005 * 113.60893 * 25.43122 * 26 15 14 43 43 H 1.08995 * 113.61535 * 156.33378 * 26 15 14 44 44 H 1.07998 * 120.02513 * 179.72668 * 27 7 6 45 45 H 1.08009 * 119.97422 * 180.27702 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.5966 -2.0341 -1.4482 6 6 2.0553 -2.6874 -2.5756 7 6 2.8529 -2.0142 -3.4897 8 8 3.3050 -2.6545 -4.5999 9 6 4.1210 -1.8991 -5.4974 10 9 5.2659 -1.4564 -4.8263 11 9 3.3999 -0.7961 -5.9671 12 6 4.5254 -2.7678 -6.6606 13 8 4.1520 -3.9204 -6.7152 14 7 5.3071 -2.2655 -7.6369 15 6 5.7052 -3.1117 -8.7645 16 1 5.6791 -4.1750 -8.5259 17 6 4.9955 -2.7567 -10.0819 18 6 6.1469 -1.7719 -10.3454 19 1 5.9714 -0.7761 -9.9385 20 6 6.6112 -1.7449 -11.8029 21 7 5.8030 -0.7820 -12.5551 22 6 6.2544 0.2527 -13.2848 23 7 5.2209 0.8692 -13.7979 24 6 4.0977 0.2604 -13.4195 25 7 4.4027 -0.7597 -12.6613 26 6 7.0123 -2.6638 -9.4395 27 6 3.1924 -0.6878 -3.2659 28 6 2.7259 -0.0372 -2.1400 29 1 -0.3933 0.4417 0.7651 30 1 1.7924 -0.5138 0.8899 31 1 3.5346 1.7703 0.0321 32 1 1.5614 2.4679 -1.2084 33 1 0.9760 -2.5578 -0.7362 34 1 1.7932 -3.7212 -2.7454 35 1 5.6059 -1.3438 -7.5929 36 1 4.9556 -3.5822 -10.7926 37 1 4.0297 -2.2715 -9.9405 38 1 7.6598 -1.4502 -11.8447 39 1 6.4949 -2.7367 -12.2397 40 1 7.2897 0.5277 -13.4228 41 1 3.0977 0.5590 -13.6975 42 1 7.6748 -2.1036 -8.7796 43 1 7.5238 -3.4639 -9.9746 44 1 3.8168 -0.1630 -3.9737 45 1 2.9862 0.9967 -1.9676 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_4549640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:42:41 Heat of formation + Delta-G solvation = -35.987500 kcal Electronic energy + Delta-G solvation = -34489.447572 eV Core-core repulsion = 29341.610690 eV Total energy + Delta-G solvation = -5147.836882 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.133 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -51.06371 -49.03682 -42.99339 -41.75448 -41.45479 -39.94970 -39.22624 -37.32937 -35.71749 -34.19638 -32.67242 -32.24807 -32.16776 -29.81654 -28.61294 -26.81003 -26.38233 -25.02603 -24.39482 -22.99769 -22.86773 -22.50913 -22.46362 -20.84999 -20.62767 -19.87485 -19.85785 -18.44690 -18.34485 -18.16614 -17.55176 -17.14649 -16.86032 -16.66041 -16.55309 -16.46851 -16.15680 -15.95195 -15.86530 -15.56902 -15.47705 -15.36082 -15.29692 -15.27086 -14.97793 -14.71243 -14.57499 -14.46993 -14.16073 -14.02354 -13.75745 -13.58336 -13.28412 -13.22125 -12.90595 -12.60864 -12.33355 -12.28423 -11.99879 -11.88879 -11.71736 -11.36063 -10.98734 -10.80388 -10.63175 -10.51992 -10.39797 -10.35379 -9.70313 -4.98318 -0.15180 -0.04378 0.30862 0.48242 0.69886 1.26740 1.45615 1.51572 1.60487 1.84449 1.93690 2.00174 2.27552 2.61295 3.05380 3.23471 3.24620 3.33147 3.37759 3.48300 3.52713 3.56438 3.65115 3.79361 3.89785 3.91264 4.06569 4.10234 4.17518 4.22504 4.36445 4.42905 4.43329 4.56055 4.64539 4.68997 4.71884 4.74213 4.82074 4.84759 4.94895 4.97828 5.17462 5.21422 5.26672 5.36533 5.44317 5.65060 5.71087 5.94993 6.31514 6.90020 7.13063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.073 4.073 3 Si 0.771 3.229 4 C -0.108 4.108 5 C -0.053 4.053 6 C -0.129 4.129 7 C 0.085 3.915 8 O -0.301 6.301 9 C 0.432 3.568 10 F -0.171 7.171 11 F -0.175 7.175 12 C 0.521 3.479 13 O -0.503 6.503 14 N -0.670 5.670 15 C 0.103 3.897 16 H 0.104 0.896 17 C -0.138 4.138 18 C -0.116 4.116 19 H 0.088 0.912 20 C 0.131 3.869 21 N -0.378 5.378 22 C 0.256 3.744 23 N -0.586 5.586 24 C 0.182 3.818 25 N -0.343 5.343 26 C -0.110 4.110 27 C -0.194 4.194 28 C -0.100 4.100 29 H 0.405 0.595 30 H 0.104 0.896 31 H -0.287 1.287 32 H -0.300 1.300 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.421 0.579 36 H 0.103 0.897 37 H 0.050 0.950 38 H 0.145 0.855 39 H 0.100 0.900 40 H 0.259 0.741 41 H 0.227 0.773 42 H 0.098 0.902 43 H 0.131 0.869 44 H 0.137 0.863 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.216 1.469 3.199 7.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.183 4.183 3 Si 0.678 3.322 4 C -0.109 4.109 5 C -0.070 4.070 6 C -0.148 4.148 7 C 0.042 3.958 8 O -0.217 6.217 9 C 0.354 3.646 10 F -0.152 7.152 11 F -0.157 7.157 12 C 0.299 3.701 13 O -0.376 6.376 14 N -0.323 5.323 15 C -0.001 4.001 16 H 0.122 0.878 17 C -0.176 4.176 18 C -0.136 4.136 19 H 0.106 0.894 20 C 0.010 3.990 21 N -0.169 5.169 22 C -0.040 4.040 23 N -0.314 5.314 24 C -0.120 4.120 25 N -0.172 5.172 26 C -0.148 4.148 27 C -0.212 4.212 28 C -0.118 4.118 29 H 0.257 0.743 30 H 0.121 0.879 31 H -0.215 1.215 32 H -0.228 1.228 33 H 0.181 0.819 34 H 0.173 0.827 35 H 0.258 0.742 36 H 0.122 0.878 37 H 0.068 0.932 38 H 0.163 0.837 39 H 0.118 0.882 40 H 0.275 0.725 41 H 0.243 0.757 42 H 0.116 0.884 43 H 0.149 0.851 44 H 0.155 0.845 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.037 0.484 2.294 6.476 hybrid contribution 0.120 0.488 -0.367 0.622 sum 6.156 0.972 1.926 6.524 Atomic orbital electron populations 1.86438 1.16912 1.82409 1.51545 1.24729 0.86101 1.10647 0.96866 0.94413 0.77343 0.75645 0.84824 1.19815 0.98964 0.95208 0.96888 1.21161 0.96504 0.93354 0.96013 1.20837 0.98527 1.01993 0.93403 1.19197 0.97576 0.92085 0.86907 1.86643 1.63975 1.39045 1.32081 1.21881 0.76717 0.79447 0.86546 1.93191 1.50516 1.89867 1.81652 1.93194 1.78297 1.55663 1.88543 1.19294 0.81026 0.87078 0.82716 1.90855 1.53352 1.17098 1.76278 1.45453 1.48702 1.16950 1.21162 1.22278 0.98116 0.95597 0.84076 0.87756 1.23450 0.97965 0.99867 0.96327 1.22847 0.97141 0.99131 0.94441 0.89372 1.22268 0.94913 0.92283 0.89506 1.50788 1.04219 1.24125 1.37765 1.26906 1.01856 0.85469 0.89769 1.70544 0.98604 1.32766 1.29502 1.26409 1.00056 0.90823 0.94762 1.78008 0.91750 1.23355 1.24073 1.23326 0.94310 1.00205 0.96930 1.21490 1.04966 0.93833 1.00950 1.20825 0.98097 0.99144 0.93731 0.74308 0.87873 1.21451 1.22805 0.81891 0.82686 0.74157 0.87844 0.93151 0.83702 0.88194 0.72509 0.75669 0.88391 0.85072 0.84510 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.58 12.74 -148.98 -1.90 -1.32 16 2 C -0.07 0.08 2.81 71.24 0.20 0.28 16 3 Si 0.77 -1.44 29.78 68.60 2.04 0.61 16 4 C -0.11 -0.59 5.42 -19.85 -0.11 -0.69 16 5 C -0.05 -0.23 9.60 22.25 0.21 -0.01 16 6 C -0.13 -0.85 9.99 22.37 0.22 -0.63 16 7 C 0.09 0.85 6.48 22.51 0.15 0.99 16 8 O -0.30 -3.39 9.60 -73.40 -0.70 -4.10 16 9 C 0.43 3.05 2.05 71.24 0.15 3.20 16 10 F -0.17 -0.86 15.27 44.97 0.69 -0.17 16 11 F -0.18 -1.19 15.31 44.97 0.69 -0.50 16 12 C 0.52 3.20 7.34 87.66 0.64 3.84 16 13 O -0.50 -6.54 16.10 16.00 0.26 -6.28 16 14 N -0.67 1.10 5.26 -440.02 -2.32 -1.22 16 15 C 0.10 -0.45 4.32 45.52 0.20 -0.25 16 16 H 0.10 -0.16 7.46 -2.39 -0.02 -0.18 16 17 C -0.14 0.46 7.43 31.12 0.23 0.69 16 18 C -0.12 1.02 3.73 -10.27 -0.04 0.98 16 19 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 20 C 0.13 -1.35 6.39 86.38 0.55 -0.80 16 21 N -0.38 0.73 3.69 -352.07 -1.30 -0.56 16 22 C 0.26 -0.58 12.63 180.36 2.28 1.70 16 23 N -0.59 -3.19 11.19 -204.01 -2.28 -5.47 16 24 C 0.18 0.95 13.03 180.77 2.36 3.31 16 25 N -0.34 -1.79 12.57 -61.25 -0.77 -2.56 16 26 C -0.11 1.34 7.39 31.12 0.23 1.57 16 27 C -0.19 -1.75 8.26 22.36 0.18 -1.57 16 28 C -0.10 -0.78 8.66 22.25 0.19 -0.59 16 29 H 0.41 -4.73 8.74 -74.06 -0.65 -5.38 16 30 H 0.10 -0.62 7.96 -2.39 -0.02 -0.64 16 31 H -0.29 -0.97 7.11 99.48 0.71 -0.27 16 32 H -0.30 -1.90 7.11 99.48 0.71 -1.20 16 33 H 0.16 -0.08 8.06 -2.91 -0.02 -0.11 16 34 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 35 H 0.42 -2.65 8.70 -92.71 -0.81 -3.45 16 36 H 0.10 -0.42 7.90 -2.39 -0.02 -0.44 16 37 H 0.05 0.15 8.14 -2.38 -0.02 0.13 16 38 H 0.15 -2.60 8.09 -2.39 -0.02 -2.62 16 39 H 0.10 -1.09 7.85 -2.39 -0.02 -1.11 16 40 H 0.26 -3.28 8.06 -2.91 -0.02 -3.30 16 41 H 0.23 0.06 8.06 -2.91 -0.02 0.04 16 42 H 0.10 -1.37 8.14 -2.38 -0.02 -1.39 16 43 H 0.13 -2.10 8.10 -2.39 -0.02 -2.12 16 44 H 0.14 1.01 5.10 -2.91 -0.01 0.99 16 45 H 0.13 0.79 4.87 -2.91 -0.01 0.78 16 Total: 0.00 -31.66 392.72 1.72 -29.94 By element: Atomic # 1 Polarization: -20.04 SS G_CDS: -0.33 Total: -20.38 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 7.65 Total: 12.02 kcal Atomic # 7 Polarization: -3.15 SS G_CDS: -6.67 Total: -9.81 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -2.35 Total: -11.70 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 1.38 Total: -0.67 kcal Atomic # 14 Polarization: -1.44 SS G_CDS: 2.04 Total: 0.61 kcal Total: -31.66 1.72 -29.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_4549640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.047 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds