Wall clock time and date at job start Sun Mar 7 2021 04:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86303 * 109.46551 * 2 1 4 4 C 1.50701 * 109.47266 * 119.99652 * 2 1 3 5 5 C 1.38237 * 119.97162 * 244.98279 * 4 2 1 6 6 C 1.38293 * 120.11213 * 180.02562 * 5 4 2 7 7 C 1.38127 * 120.05123 * 359.76546 * 6 5 4 8 8 C 1.38753 * 119.94121 * 0.50843 * 7 6 5 9 9 O 1.35903 * 120.04896 * 179.74120 * 8 7 6 10 10 C 1.42897 * 117.00379 * 359.72759 * 9 8 7 11 11 C 1.50702 * 109.47128 * 179.97438 * 10 9 8 12 12 O 1.21278 * 119.99935 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99614 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99859 * 180.02562 * 13 11 10 15 15 H 1.09007 * 112.84867 * 336.20217 * 14 13 11 16 16 C 1.53777 * 113.69118 * 107.46470 * 14 13 11 17 17 C 1.53783 * 87.08089 * 89.12976 * 16 14 13 18 18 H 1.08996 * 113.69271 * 270.87507 * 17 16 14 19 19 C 1.53001 * 113.61626 * 139.97923 * 17 16 14 20 20 N 1.46506 * 109.46688 * 87.50545 * 19 17 16 21 21 C 1.34424 * 126.82028 * 125.00386 * 20 19 17 22 22 N 1.30835 * 108.07649 * 179.97438 * 21 20 19 23 23 C 1.33238 * 109.83029 * 0.02562 * 22 21 20 24 24 N 1.30712 * 108.94316 * 359.75029 * 23 22 21 25 25 C 1.53775 * 113.61690 * 205.00502 * 14 13 11 26 26 C 1.38164 * 119.96882 * 65.00225 * 4 2 1 27 27 H 0.96695 * 114.00052 * 299.99372 * 1 2 3 28 28 H 1.08999 * 109.47049 * 240.00233 * 2 1 3 29 29 H 1.48504 * 110.00275 * 299.99571 * 3 2 1 30 30 H 1.48494 * 110.00287 * 61.32071 * 3 2 1 31 31 H 1.08000 * 119.94667 * 0.02562 * 5 4 2 32 32 H 1.07997 * 119.97161 * 180.02562 * 6 5 4 33 33 H 1.08004 * 120.02595 * 180.27437 * 7 6 5 34 34 H 1.08997 * 109.47138 * 59.99973 * 10 9 8 35 35 H 1.08998 * 109.47542 * 299.99747 * 10 9 8 36 36 H 0.96997 * 120.00616 * 0.02562 * 13 11 10 37 37 H 1.09003 * 113.61810 * 334.58497 * 16 14 13 38 38 H 1.08998 * 113.61705 * 203.67534 * 16 14 13 39 39 H 1.08999 * 109.47230 * 327.50630 * 19 17 16 40 40 H 1.09000 * 109.47236 * 207.50225 * 19 17 16 41 41 H 1.07996 * 125.96633 * 359.92153 * 21 20 19 42 42 H 1.07993 * 125.52851 * 180.02562 * 23 22 21 43 43 H 1.09007 * 113.61556 * 156.25298 * 25 14 13 44 44 H 1.08997 * 113.69712 * 25.35774 * 25 14 13 45 45 H 1.08003 * 120.03016 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 2.6391 -0.0116 2.1907 6 6 3.1019 -0.6607 3.3207 7 6 2.8537 -2.0083 3.4949 8 6 2.1486 -2.7130 2.5298 9 8 1.9077 -4.0401 2.6964 10 6 2.4149 -4.6471 3.8864 11 6 2.0530 -6.1100 3.8975 12 8 1.4233 -6.5859 2.9768 13 7 2.4302 -6.8896 4.9302 14 6 2.0789 -8.3119 4.9409 15 1 1.2070 -8.5371 4.3266 16 6 3.2731 -9.2452 4.6810 17 6 3.5088 -9.2377 6.2007 18 1 4.1625 -8.4335 6.5385 19 6 3.9053 -10.6029 6.7662 20 7 5.3593 -10.7620 6.6837 21 6 6.1965 -11.0534 7.6942 22 7 7.4114 -11.1088 7.2118 23 6 7.3899 -10.8589 5.9032 24 7 6.1549 -10.6453 5.5322 25 6 2.0119 -8.9194 6.3519 26 6 1.6846 -2.0594 1.3977 27 1 -0.3933 0.4416 0.7651 28 1 1.7923 -0.5138 -0.8900 29 1 1.5614 2.4680 -1.2086 30 1 1.5878 2.4586 1.2242 31 1 2.8308 1.0429 2.0582 32 1 3.6541 -0.1125 4.0697 33 1 3.2115 -2.5138 4.3797 34 1 1.9787 -4.1587 4.7577 35 1 3.4993 -4.5406 3.9150 36 1 2.9342 -6.5091 5.6665 37 1 4.0770 -8.7778 4.1122 38 1 2.9873 -10.2210 4.2884 39 1 3.4203 -11.3901 6.1890 40 1 3.5910 -10.6699 7.8078 41 1 5.9156 -11.2129 8.7247 42 1 8.2524 -10.8407 5.2536 43 1 1.3812 -9.8062 6.4161 44 1 1.7973 -8.1901 7.1331 45 1 1.1323 -2.6050 0.6469 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_4860298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:42:51 Heat of formation + Delta-G solvation = 53.759726 kcal Electronic energy + Delta-G solvation = -28454.975261 eV Core-core repulsion = 24249.938062 eV Total energy + Delta-G solvation = -4205.037199 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.96274 -41.71454 -41.07078 -39.74785 -38.86629 -37.36266 -35.46962 -34.02405 -32.52028 -32.13906 -31.69068 -29.79636 -28.55747 -26.84178 -26.73281 -24.61269 -23.71446 -22.90725 -22.83227 -22.37076 -21.72401 -20.39159 -19.38696 -18.69088 -18.19006 -17.74624 -17.52304 -17.39441 -17.08166 -16.78902 -16.65612 -16.23876 -16.09315 -15.72859 -15.64736 -15.31259 -15.17570 -14.98370 -14.76519 -14.60921 -14.16891 -14.05842 -14.01688 -13.60462 -13.43574 -13.12148 -13.03247 -12.83551 -12.63975 -12.21393 -12.15067 -12.01959 -11.74786 -11.61373 -11.28116 -11.10459 -10.95219 -10.77360 -10.68077 -10.54695 -10.21291 -9.97145 -9.32083 -4.91769 0.17862 0.36441 0.73043 1.25482 1.33969 1.43105 1.48455 1.60149 1.95387 2.03222 2.52742 2.63730 3.30282 3.38863 3.44243 3.45643 3.55896 3.63924 3.64792 3.74808 3.81171 3.94955 3.96747 4.02915 4.09680 4.13927 4.22235 4.23375 4.33442 4.44030 4.51580 4.59490 4.62486 4.66043 4.75215 4.81620 4.95636 4.97515 5.02567 5.11360 5.21658 5.33901 5.34521 5.42342 5.47698 5.50556 5.66917 5.97684 6.22290 6.39355 6.45049 7.04346 7.16136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.096 4.096 3 Si 0.786 3.214 4 C -0.081 4.081 5 C -0.158 4.158 6 C -0.070 4.070 7 C -0.202 4.202 8 C 0.112 3.888 9 O -0.324 6.324 10 C 0.039 3.961 11 C 0.514 3.486 12 O -0.573 6.573 13 N -0.692 5.692 14 C 0.107 3.893 15 H 0.082 0.918 16 C -0.139 4.139 17 C -0.108 4.108 18 H 0.095 0.905 19 C 0.129 3.871 20 N -0.378 5.378 21 C 0.256 3.744 22 N -0.586 5.586 23 C 0.183 3.817 24 N -0.345 5.345 25 C -0.112 4.112 26 C -0.149 4.149 27 H 0.386 0.614 28 H 0.118 0.882 29 H -0.305 1.305 30 H -0.274 1.274 31 H 0.149 0.851 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.420 0.580 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.145 0.855 41 H 0.259 0.741 42 H 0.228 0.772 43 H 0.118 0.882 44 H 0.099 0.901 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.526 1.864 10.773 11.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.203 4.203 3 Si 0.690 3.310 4 C -0.081 4.081 5 C -0.175 4.175 6 C -0.088 4.088 7 C -0.220 4.220 8 C 0.068 3.932 9 O -0.237 6.237 10 C -0.039 4.039 11 C 0.300 3.700 12 O -0.451 6.451 13 N -0.346 5.346 14 C 0.002 3.998 15 H 0.100 0.900 16 C -0.178 4.178 17 C -0.127 4.127 18 H 0.113 0.887 19 C 0.009 3.991 20 N -0.168 5.168 21 C -0.040 4.040 22 N -0.314 5.314 23 C -0.120 4.120 24 N -0.173 5.173 25 C -0.151 4.151 26 C -0.168 4.168 27 H 0.236 0.764 28 H 0.136 0.864 29 H -0.234 1.234 30 H -0.200 1.200 31 H 0.166 0.834 32 H 0.180 0.820 33 H 0.178 0.822 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.258 0.742 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.163 0.837 41 H 0.275 0.725 42 H 0.244 0.756 43 H 0.136 0.864 44 H 0.118 0.882 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.823 1.981 8.908 9.306 hybrid contribution -0.974 -0.382 0.393 1.118 sum 0.849 1.599 9.302 9.476 Atomic orbital electron populations 1.86585 1.18641 1.80588 1.50107 1.25481 0.83480 1.12971 0.98374 0.93826 0.90009 0.70656 0.76514 1.20122 0.98158 0.92902 0.96955 1.21258 1.00565 1.00879 0.94831 1.21334 0.96784 0.93478 0.97181 1.21631 1.03566 0.96394 1.00421 1.19207 0.96382 0.82244 0.95416 1.86124 1.74606 1.20938 1.42043 1.22707 1.02441 0.90001 0.88725 1.20582 0.78696 0.88626 0.82081 1.90767 1.41051 1.76053 1.37203 1.45335 1.57250 1.08954 1.23030 1.21938 0.98128 0.79644 1.00090 0.90011 1.23402 0.97541 0.99991 0.96891 1.22782 0.97682 0.96822 0.95459 0.88714 1.22265 0.72743 0.98125 1.05955 1.50772 1.09510 1.51321 1.05219 1.26908 0.84728 0.94464 0.97880 1.70545 1.23823 1.26389 1.10601 1.26415 0.95888 0.97696 0.91977 1.78025 1.04033 1.26457 1.08776 1.23275 0.94538 1.02436 0.94814 1.20310 1.04202 0.94624 0.97685 0.76437 0.86436 1.23354 1.19983 0.83407 0.81952 0.82248 0.85502 0.85910 0.74226 0.93257 0.89282 0.88843 0.83723 0.72511 0.75605 0.86407 0.88241 0.87031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.18 12.83 -148.98 -1.91 -5.09 16 2 C -0.10 -0.19 2.80 71.24 0.20 0.01 16 3 Si 0.79 -1.38 29.88 68.60 2.05 0.67 16 4 C -0.08 -0.21 5.35 -19.88 -0.11 -0.31 16 5 C -0.16 0.29 8.67 22.28 0.19 0.49 16 6 C -0.07 0.28 10.04 22.26 0.22 0.51 16 7 C -0.20 0.47 9.04 22.37 0.20 0.67 16 8 C 0.11 0.55 6.69 22.50 0.15 0.70 16 9 O -0.32 -2.52 9.67 -73.42 -0.71 -3.23 16 10 C 0.04 -0.08 5.22 71.24 0.37 0.29 16 11 C 0.51 1.89 7.91 87.66 0.69 2.58 16 12 O -0.57 -9.13 16.10 16.01 0.26 -8.88 16 13 N -0.69 2.90 5.27 -440.04 -2.32 0.59 16 14 C 0.11 -0.34 4.32 45.51 0.20 -0.14 16 15 H 0.08 0.21 7.47 -2.38 -0.02 0.20 16 16 C -0.14 0.30 7.43 31.12 0.23 0.54 16 17 C -0.11 0.97 3.74 -10.26 -0.04 0.93 16 18 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 19 C 0.13 -1.30 6.39 86.38 0.55 -0.75 16 20 N -0.38 0.89 3.69 -352.05 -1.30 -0.41 16 21 C 0.26 -0.77 12.63 180.36 2.28 1.51 16 22 N -0.59 -2.63 11.19 -204.01 -2.28 -4.91 16 23 C 0.18 0.79 13.03 180.77 2.36 3.14 16 24 N -0.34 -1.61 12.57 -61.25 -0.77 -2.38 16 25 C -0.11 1.28 7.39 31.12 0.23 1.51 16 26 C -0.15 -1.05 9.62 22.36 0.22 -0.84 16 27 H 0.39 -0.22 8.70 -74.06 -0.64 -0.87 16 28 H 0.12 0.19 7.96 -2.39 -0.02 0.17 16 29 H -0.30 -1.91 7.11 99.48 0.71 -1.21 16 30 H -0.27 -0.14 7.01 99.48 0.70 0.56 16 31 H 0.15 -0.90 4.84 -2.91 -0.01 -0.92 16 32 H 0.16 -1.68 8.06 -2.91 -0.02 -1.70 16 33 H 0.16 -1.48 6.30 -2.91 -0.02 -1.50 16 34 H 0.13 -1.16 7.65 -2.39 -0.02 -1.18 16 35 H 0.12 -1.01 7.67 -2.39 -0.02 -1.02 16 36 H 0.42 -4.90 8.70 -92.71 -0.81 -5.71 16 37 H 0.05 0.17 8.14 -2.39 -0.02 0.16 16 38 H 0.09 -0.12 7.90 -2.39 -0.02 -0.14 16 39 H 0.09 -0.89 7.84 -2.39 -0.02 -0.91 16 40 H 0.15 -2.57 8.09 -2.39 -0.02 -2.59 16 41 H 0.26 -3.47 8.06 -2.91 -0.02 -3.49 16 42 H 0.23 -0.18 8.06 -2.91 -0.02 -0.20 16 43 H 0.12 -1.62 8.10 -2.38 -0.02 -1.64 16 44 H 0.10 -1.41 8.14 -2.39 -0.02 -1.43 16 45 H 0.11 1.18 8.06 -2.91 -0.02 1.15 16 Total: 0.00 -36.47 383.44 0.58 -35.89 By element: Atomic # 1 Polarization: -22.69 SS G_CDS: -0.38 Total: -23.07 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: 7.95 Total: 10.82 kcal Atomic # 7 Polarization: -0.45 SS G_CDS: -6.67 Total: -7.12 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -2.36 Total: -17.19 kcal Atomic # 14 Polarization: -1.38 SS G_CDS: 2.05 Total: 0.67 kcal Total: -36.47 0.58 -35.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_4860298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.652 kcal (2) G-P(sol) polarization free energy of solvation -36.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds