Wall clock time and date at job start Sun Mar 7 2021 04:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.39151 * 120.07619 * 179.72796 * 3 2 1 5 5 O 1.36002 * 120.06937 * 0.02562 * 4 3 2 6 6 C 1.42902 * 116.99631 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47100 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99560 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00220 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00087 * 180.02562 * 9 7 6 11 11 H 1.09001 * 112.85348 * 23.80133 * 10 9 7 12 12 C 1.53782 * 113.61624 * 154.99893 * 10 9 7 13 13 C 1.53782 * 87.08033 * 89.11498 * 12 10 9 14 14 H 1.08992 * 113.61455 * 270.88189 * 13 12 10 15 15 C 1.53007 * 113.61436 * 140.06681 * 13 12 10 16 16 N 1.46497 * 109.47095 * 175.00371 * 15 13 12 17 17 C 1.34422 * 126.82548 * 125.00013 * 16 15 13 18 18 N 1.30828 * 108.08107 * 179.97438 * 17 16 15 19 19 C 1.33246 * 109.82874 * 359.97438 * 18 17 16 20 20 N 1.30712 * 108.94449 * 359.75512 * 19 18 17 21 21 C 1.53784 * 87.08196 * 25.43558 * 13 12 10 22 22 C 1.38559 * 119.85592 * 179.72039 * 4 3 2 23 23 C 1.38247 * 119.99995 * 0.55606 * 22 4 3 24 24 C 1.38254 * 120.14265 * 359.71512 * 23 22 4 25 25 C 1.50700 * 119.92546 * 179.97438 * 24 23 22 26 26 O 1.42902 * 109.47168 * 245.02569 * 25 24 23 27 27 Si 1.86302 * 109.47174 * 5.02467 * 25 24 23 28 28 C 1.38239 * 120.14652 * 0.02562 * 24 23 22 29 29 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 31 31 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 32 32 H 1.09001 * 109.46853 * 299.99631 * 6 5 4 33 33 H 1.08996 * 109.47505 * 59.99406 * 6 5 4 34 34 H 0.97002 * 119.99726 * 359.97438 * 9 7 6 35 35 H 1.09001 * 113.61546 * 203.66190 * 12 10 9 36 36 H 1.08995 * 113.61693 * 334.56699 * 12 10 9 37 37 H 1.09008 * 109.46780 * 295.00140 * 15 13 12 38 38 H 1.08994 * 109.46851 * 54.99487 * 15 13 12 39 39 H 1.08005 * 125.96010 * 359.92560 * 17 16 15 40 40 H 1.07995 * 125.53258 * 179.97438 * 19 18 17 41 41 H 1.08992 * 113.61392 * 220.02183 * 21 13 12 42 42 H 1.08998 * 113.61224 * 89.11202 * 21 13 12 43 43 H 1.08001 * 120.00429 * 180.27535 * 22 4 3 44 44 H 1.07995 * 119.93007 * 179.74252 * 23 22 4 45 45 H 1.08997 * 109.47326 * 125.02843 * 25 24 23 46 46 H 0.96700 * 114.00515 * 59.99650 * 26 25 24 47 47 H 1.48495 * 109.99916 * 58.68110 * 27 25 24 48 48 H 1.48504 * 109.99916 * 180.02562 * 27 25 24 49 49 H 1.08008 * 120.00118 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2862 0.0057 5 8 4.1795 0.1475 0.0108 6 6 5.6003 0.3005 0.0171 7 6 6.2518 -1.0584 0.0227 8 8 5.5668 -2.0593 0.0219 9 7 7.5956 -1.1614 0.0286 10 6 8.2289 -2.4824 0.0335 11 1 7.5850 -3.2621 -0.3733 12 6 9.6493 -2.4868 -0.5560 13 6 10.1546 -2.1804 0.8637 14 1 10.2099 -1.1150 1.0870 15 6 11.4346 -2.9322 1.2343 16 7 11.8993 -2.4864 2.5502 17 6 12.1517 -3.2600 3.6201 18 7 12.5464 -2.4850 4.5975 19 6 12.5591 -1.2160 4.1911 20 7 12.1759 -1.1665 2.9424 21 6 8.8716 -2.8525 1.3807 22 6 4.0604 2.5232 -0.0002 23 6 3.3031 3.6798 -0.0001 24 6 1.9225 3.6057 -0.0001 25 6 1.1018 4.8696 0.0006 26 8 0.3654 4.9587 1.2220 27 14 2.2311 6.3434 -0.1525 28 6 1.2934 2.3748 0.0004 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 5.9106 0.8489 -0.8724 33 1 5.9025 0.8516 0.9075 34 1 8.1434 -0.3609 0.0288 35 1 9.9636 -3.4610 -0.9305 36 1 9.8295 -1.6806 -1.2670 37 1 11.2314 -4.0028 1.2642 38 1 12.2038 -2.7292 0.4892 39 1 12.0463 -4.3339 3.6653 40 1 12.8435 -0.3667 4.7944 41 1 8.4240 -2.3414 2.2329 42 1 8.9734 -3.9266 1.5355 43 1 5.1387 2.5838 -0.0002 44 1 3.7910 4.6432 -0.0005 45 1 0.4092 4.8535 -0.8409 46 1 0.9189 4.9775 2.0147 47 1 3.0257 6.2466 -1.4032 48 1 1.4338 7.5963 -0.1524 49 1 0.2147 2.3196 0.0000 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_60476.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:43:08 Heat of formation + Delta-G solvation = 19.636529 kcal Electronic energy + Delta-G solvation = -33007.060854 eV Core-core repulsion = 28326.324151 eV Total energy + Delta-G solvation = -4680.736703 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.167 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.96130 -41.87892 -41.30098 -39.96110 -39.11240 -38.81388 -36.93405 -35.44731 -33.99546 -32.13732 -32.05107 -31.48858 -29.96440 -28.71761 -28.39648 -26.73664 -26.22307 -24.64717 -23.61776 -22.91602 -22.64845 -22.35806 -21.89199 -20.25970 -19.80770 -18.62702 -18.48499 -18.19921 -17.89345 -17.58054 -17.27472 -16.97062 -16.77551 -16.67146 -16.11664 -16.02475 -15.91893 -15.73115 -15.66665 -15.54957 -15.21808 -15.00094 -14.91270 -14.66187 -14.31353 -13.85998 -13.80212 -13.63856 -13.54864 -13.42923 -13.27034 -12.77192 -12.65034 -12.56017 -12.20797 -12.14842 -12.13598 -11.99995 -11.77448 -11.74607 -11.42198 -11.06994 -10.94510 -10.75950 -10.49329 -10.44589 -10.17590 -9.82058 -8.94397 -4.97961 0.13868 0.25286 0.72281 1.32375 1.38096 1.42849 1.48032 1.66625 1.99032 2.03676 2.28277 2.52620 2.53521 3.39245 3.44724 3.47969 3.48340 3.51921 3.56485 3.68116 3.78276 3.83767 3.87131 3.95597 4.01207 4.07253 4.11663 4.18116 4.21978 4.25711 4.28115 4.33623 4.48269 4.51118 4.54268 4.60902 4.63602 4.67667 4.75424 4.81947 4.96310 4.97881 5.03030 5.09753 5.14917 5.33770 5.34694 5.48832 5.51029 5.57291 5.93362 5.96483 6.35114 6.50156 6.76622 7.07726 7.15907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.077 3.923 4 C 0.084 3.916 5 O -0.314 6.314 6 C 0.034 3.966 7 C 0.515 3.485 8 O -0.570 6.570 9 N -0.695 5.695 10 C 0.110 3.890 11 H 0.086 0.914 12 C -0.116 4.116 13 C -0.113 4.113 14 H 0.092 0.908 15 C 0.131 3.869 16 N -0.376 5.376 17 C 0.254 3.746 18 N -0.586 5.586 19 C 0.185 3.815 20 N -0.345 5.345 21 C -0.146 4.146 22 C -0.160 4.160 23 C -0.108 4.108 24 C -0.119 4.119 25 C -0.076 4.076 26 O -0.557 6.557 27 Si 0.786 3.214 28 C -0.152 4.152 29 H 0.111 0.889 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.419 0.581 35 H 0.121 0.879 36 H 0.090 0.910 37 H 0.136 0.864 38 H 0.101 0.899 39 H 0.254 0.746 40 H 0.232 0.768 41 H 0.048 0.952 42 H 0.107 0.893 43 H 0.175 0.825 44 H 0.161 0.839 45 H 0.104 0.896 46 H 0.395 0.605 47 H -0.280 1.280 48 H -0.303 1.303 49 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.815 1.755 -1.559 6.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.032 3.968 4 C 0.038 3.962 5 O -0.227 6.227 6 C -0.043 4.043 7 C 0.301 3.699 8 O -0.448 6.448 9 N -0.348 5.348 10 C 0.005 3.995 11 H 0.104 0.896 12 C -0.155 4.155 13 C -0.132 4.132 14 H 0.110 0.890 15 C 0.010 3.990 16 N -0.166 5.166 17 C -0.042 4.042 18 N -0.315 5.315 19 C -0.117 4.117 20 N -0.174 5.174 21 C -0.184 4.184 22 C -0.178 4.178 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.185 4.185 26 O -0.365 6.365 27 Si 0.691 3.309 28 C -0.171 4.171 29 H 0.130 0.870 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.257 0.743 35 H 0.140 0.860 36 H 0.108 0.892 37 H 0.154 0.846 38 H 0.119 0.881 39 H 0.270 0.730 40 H 0.248 0.752 41 H 0.067 0.933 42 H 0.126 0.874 43 H 0.193 0.807 44 H 0.178 0.822 45 H 0.121 0.879 46 H 0.246 0.754 47 H -0.207 1.207 48 H -0.231 1.231 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.065 1.842 -2.624 5.995 hybrid contribution -0.741 -0.219 -0.214 0.801 sum 4.325 1.623 -2.839 5.422 Atomic orbital electron populations 1.23286 0.76807 1.05232 1.02070 1.86187 1.22996 1.26612 1.89088 1.18663 0.89895 0.85621 1.02669 1.18591 0.88199 0.86532 1.02835 1.86222 1.18117 1.29073 1.89328 1.22761 0.79455 0.95177 1.06943 1.20549 0.82988 0.90847 0.75507 1.90772 1.64031 1.40111 1.49916 1.45377 1.05060 1.09857 1.74551 1.21899 0.94698 0.85072 0.97870 0.89570 1.23299 0.91601 1.05258 0.95296 1.22823 0.92437 1.00520 0.97426 0.89006 1.22260 0.96504 1.00942 0.79273 1.50745 1.48627 1.04162 1.13087 1.26821 0.94136 1.01113 0.82146 1.70546 1.25861 1.02861 1.32189 1.26450 0.97986 0.96084 0.91212 1.77917 1.24283 0.99434 1.15741 1.23555 0.95989 1.02173 0.96707 1.21384 1.02255 0.89371 1.04803 1.21005 0.92251 0.98946 1.00367 1.20207 0.94514 0.94841 1.02397 1.25263 1.01020 1.02248 0.89983 1.86467 1.37518 1.96647 1.15896 0.93664 0.79250 0.72542 0.85442 1.21020 1.00496 0.90595 1.05019 0.87027 0.91879 0.91712 0.85484 0.85665 0.74322 0.86034 0.89154 0.84636 0.88050 0.72992 0.75225 0.93265 0.87439 0.80746 0.82204 0.87869 0.75450 1.20664 1.23092 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.17 16 2 O -0.33 -3.83 10.28 -79.59 -0.82 -4.65 16 3 C 0.08 0.65 6.70 22.57 0.15 0.80 16 4 C 0.08 0.49 6.70 22.57 0.15 0.64 16 5 O -0.31 -2.78 9.46 -67.15 -0.63 -3.42 16 6 C 0.03 -0.07 5.22 71.24 0.37 0.30 16 7 C 0.51 1.87 7.91 87.66 0.69 2.57 16 8 O -0.57 -8.98 16.10 15.99 0.26 -8.73 16 9 N -0.69 2.89 5.26 -440.04 -2.32 0.58 16 10 C 0.11 -0.45 4.32 45.52 0.20 -0.26 16 11 H 0.09 0.09 7.46 -2.39 -0.02 0.07 16 12 C -0.12 1.26 7.39 31.12 0.23 1.49 16 13 C -0.11 0.98 3.75 -10.26 -0.04 0.94 16 14 H 0.09 -0.49 8.01 -2.39 -0.02 -0.51 16 15 C 0.13 -1.28 6.39 86.38 0.55 -0.72 16 16 N -0.38 0.79 3.69 -352.06 -1.30 -0.51 16 17 C 0.25 -0.47 12.63 180.36 2.28 1.81 16 18 N -0.59 -2.95 11.19 -204.01 -2.28 -5.23 16 19 C 0.19 0.69 13.03 180.76 2.36 3.05 16 20 N -0.35 -1.26 12.46 -61.25 -0.76 -2.02 16 21 C -0.15 0.77 7.43 31.12 0.23 1.00 16 22 C -0.16 0.36 9.04 22.35 0.20 0.57 16 23 C -0.11 0.34 8.66 22.28 0.19 0.54 16 24 C -0.12 -0.05 5.35 -19.86 -0.11 -0.15 16 25 C -0.08 0.07 2.80 71.24 0.20 0.27 16 26 O -0.56 -0.05 12.83 -148.98 -1.91 -1.96 16 27 Si 0.79 -3.03 29.80 68.60 2.04 -0.99 16 28 C -0.15 -0.65 8.67 22.35 0.19 -0.45 16 29 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.06 0.03 7.66 -2.39 -0.02 0.01 16 31 H 0.06 0.04 7.66 -2.38 -0.02 0.02 16 32 H 0.13 -1.15 7.65 -2.39 -0.02 -1.17 16 33 H 0.13 -1.08 7.68 -2.39 -0.02 -1.10 16 34 H 0.42 -4.55 8.70 -92.71 -0.81 -5.36 16 35 H 0.12 -1.71 8.10 -2.39 -0.02 -1.73 16 36 H 0.09 -1.06 8.14 -2.39 -0.02 -1.08 16 37 H 0.14 -2.16 7.80 -2.38 -0.02 -2.17 16 38 H 0.10 -1.11 8.14 -2.39 -0.02 -1.12 16 39 H 0.25 -2.89 8.06 -2.91 -0.02 -2.91 16 40 H 0.23 -0.47 8.06 -2.91 -0.02 -0.49 16 41 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.11 -0.85 7.90 -2.39 -0.02 -0.87 16 43 H 0.18 -1.82 6.30 -2.91 -0.02 -1.83 16 44 H 0.16 -1.49 4.89 -2.91 -0.01 -1.50 16 45 H 0.10 0.06 7.96 -2.39 -0.02 0.04 16 46 H 0.40 -3.17 8.70 -74.06 -0.64 -3.81 16 47 H -0.28 -0.03 7.11 99.48 0.71 0.68 16 48 H -0.30 -1.28 7.11 99.48 0.71 -0.57 16 49 H 0.14 0.40 6.30 -2.91 -0.02 0.39 16 Total: 0.00 -39.27 412.54 0.84 -38.43 By element: Atomic # 1 Polarization: -24.65 SS G_CDS: -0.40 Total: -25.05 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 8.97 Total: 13.55 kcal Atomic # 7 Polarization: -0.53 SS G_CDS: -6.66 Total: -7.19 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -3.11 Total: -18.75 kcal Atomic # 14 Polarization: -3.03 SS G_CDS: 2.04 Total: -0.99 kcal Total: -39.27 0.84 -38.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_60476.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.066 kcal (2) G-P(sol) polarization free energy of solvation -39.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds