Wall clock time and date at job start Sun Mar 7 2021 04:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35968 * 116.99647 * 2 1 4 4 C 1.39450 * 120.11553 * 179.97438 * 3 2 1 5 5 O 1.34774 * 133.24428 * 0.30738 * 4 3 2 6 6 C 1.34932 * 110.84692 * 180.11259 * 5 4 3 7 7 C 1.46982 * 125.14399 * 179.87906 * 6 5 4 8 8 O 1.21655 * 120.00312 * 179.70119 * 7 6 5 9 9 N 1.34784 * 120.00066 * 359.69832 * 7 6 5 10 10 C 1.46493 * 119.99864 * 179.72692 * 9 7 6 11 11 H 1.09002 * 112.85607 * 23.79935 * 10 9 7 12 12 C 1.53780 * 113.61595 * 155.00126 * 10 9 7 13 13 C 1.53775 * 87.08209 * 89.11149 * 12 10 9 14 14 H 1.08999 * 113.61758 * 270.88153 * 13 12 10 15 15 C 1.52999 * 113.61286 * 140.06982 * 13 12 10 16 16 N 1.46506 * 109.47194 * 175.00316 * 15 13 12 17 17 C 1.34428 * 126.82578 * 124.70860 * 16 15 13 18 18 N 1.30836 * 108.07816 * 179.89016 * 17 16 15 19 19 C 1.33238 * 109.82225 * 0.38380 * 18 17 16 20 20 N 1.30706 * 108.95532 * 359.75860 * 19 18 17 21 21 C 1.53776 * 87.08368 * 25.43490 * 13 12 10 22 22 C 1.35817 * 109.71170 * 359.61616 * 6 5 4 23 23 C 1.40613 * 119.13773 * 180.02562 * 4 3 2 24 24 C 1.39782 * 120.11406 * 359.97438 * 23 4 3 25 25 C 1.50698 * 120.08680 * 180.02562 * 24 23 4 26 26 O 1.42906 * 109.47055 * 284.99263 * 25 24 23 27 27 Si 1.86307 * 109.46724 * 165.00147 * 25 24 23 28 28 C 1.36629 * 119.81554 * 359.97438 * 24 23 4 29 29 C 1.38257 * 120.12379 * 359.97438 * 3 2 1 30 30 H 1.09002 * 109.47569 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47295 * 300.00218 * 1 2 3 32 32 H 1.09007 * 109.47141 * 59.99966 * 1 2 3 33 33 H 0.97000 * 119.99339 * 359.97438 * 9 7 6 34 34 H 1.08999 * 113.61977 * 203.66338 * 12 10 9 35 35 H 1.09006 * 113.61029 * 334.56474 * 12 10 9 36 36 H 1.09009 * 109.47259 * 294.99657 * 15 13 12 37 37 H 1.09002 * 109.47497 * 54.99982 * 15 13 12 38 38 H 1.08001 * 125.95785 * 0.03719 * 17 16 15 39 39 H 1.08001 * 125.52142 * 179.79967 * 19 18 17 40 40 H 1.08997 * 113.61894 * 220.02102 * 21 13 12 41 41 H 1.09004 * 113.61608 * 89.10867 * 21 13 12 42 42 H 1.08001 * 126.94866 * 180.22333 * 22 6 5 43 43 H 1.08995 * 109.47948 * 44.99995 * 25 24 23 44 44 H 0.96696 * 113.99748 * 179.97438 * 26 25 24 45 45 H 1.48506 * 110.00164 * 59.99822 * 27 25 24 46 46 H 1.48497 * 109.99978 * 181.31597 * 27 25 24 47 47 H 1.07993 * 119.75074 * 180.02562 * 28 24 23 48 48 H 1.07999 * 119.66130 * 359.96148 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 3.4386 1.2874 0.0005 5 8 4.4140 0.3574 -0.0041 6 6 5.6317 0.9386 0.0015 7 6 6.9130 0.2184 0.0011 8 8 7.9595 0.8387 0.0010 9 7 6.9285 -1.1294 0.0010 10 6 8.2056 -1.8471 -0.0054 11 1 9.0270 -1.2534 0.3959 12 6 8.1199 -3.2622 0.5905 13 6 7.7762 -3.7527 -0.8258 14 1 6.7086 -3.7397 -1.0454 15 6 8.4419 -5.0804 -1.1930 16 7 7.9621 -5.5209 -2.5053 17 6 8.7135 -5.8225 -3.5783 18 7 7.9111 -6.1740 -4.5501 19 6 6.6455 -6.1015 -4.1396 20 7 6.6252 -5.7061 -2.8940 21 6 8.5282 -2.5184 -1.3509 22 6 5.4944 2.2898 0.0016 23 6 4.0554 2.5510 0.0011 24 6 3.2765 3.7117 0.0005 25 6 3.9382 5.0656 0.0005 26 8 4.4599 5.3408 1.3021 27 14 2.6866 6.3684 -0.4548 28 6 1.9136 3.6151 -0.0011 29 6 1.2956 2.3726 -0.0005 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 6.0941 -1.6239 0.0015 34 1 9.0729 -3.6375 0.9633 35 1 7.3062 -3.3865 1.3051 36 1 9.5233 -4.9474 -1.2275 37 1 8.1919 -5.8317 -0.4438 38 1 9.7916 -5.7839 -3.6286 39 1 5.7773 -6.3327 -4.7389 40 1 8.0442 -2.0421 -2.2035 41 1 9.5930 -2.6903 -1.5088 42 1 6.2874 3.0229 0.0020 43 1 4.7509 5.0730 -0.7257 44 1 4.9013 6.1980 1.3758 45 1 1.5732 6.3687 0.5279 46 1 3.3338 7.7044 -0.4894 47 1 1.3128 4.5125 -0.0019 48 1 0.2173 2.3120 -0.0016 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_6672420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:43:26 Heat of formation + Delta-G solvation = 64.508170 kcal Electronic energy + Delta-G solvation = -34707.180621 eV Core-core repulsion = 29927.475036 eV Total energy + Delta-G solvation = -4779.705585 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 385.152 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.82155 -42.98509 -41.45766 -40.65489 -39.59276 -39.04061 -37.24307 -35.55348 -34.04232 -33.72851 -32.16331 -32.04673 -31.12111 -29.22212 -28.50472 -26.78470 -26.36312 -25.60304 -24.20366 -24.06955 -22.92770 -22.42172 -22.13895 -21.76283 -20.29174 -19.92019 -18.97917 -18.61522 -18.50502 -18.24158 -17.81020 -17.35767 -17.07431 -16.84263 -16.62317 -16.36249 -16.14951 -15.98922 -15.90860 -15.64422 -15.34080 -15.13182 -14.96952 -14.72835 -14.59745 -14.26239 -14.04044 -13.98379 -13.86805 -13.52073 -13.42261 -13.31899 -13.26443 -12.82912 -12.56964 -12.41354 -12.19864 -12.09742 -11.83808 -11.75874 -11.68511 -11.46944 -11.08073 -10.97014 -10.78924 -10.54620 -10.50815 -10.33566 -9.89078 -9.06093 -4.91759 -0.74144 0.03831 0.54430 0.70622 1.11077 1.27039 1.45697 1.60233 1.79245 1.80993 1.92074 2.01333 2.08586 2.31122 3.08368 3.32181 3.33639 3.44236 3.45968 3.50497 3.54032 3.66847 3.71549 3.76500 3.88967 3.91862 3.93550 4.09149 4.15880 4.17681 4.28537 4.33022 4.38685 4.39551 4.46937 4.50897 4.59771 4.71931 4.72867 4.75809 4.77933 4.80950 4.91098 4.96695 4.98556 5.04375 5.17926 5.26927 5.31162 5.41444 5.45901 5.53561 5.95591 6.10216 6.22353 6.56463 6.71868 7.13512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.333 6.333 3 C 0.137 3.863 4 C 0.021 3.979 5 O -0.182 6.182 6 C -0.037 4.037 7 C 0.606 3.394 8 O -0.541 6.541 9 N -0.691 5.691 10 C 0.106 3.894 11 H 0.104 0.896 12 C -0.117 4.117 13 C -0.119 4.119 14 H 0.080 0.920 15 C 0.133 3.867 16 N -0.377 5.377 17 C 0.256 3.744 18 N -0.585 5.585 19 C 0.185 3.815 20 N -0.350 5.350 21 C -0.141 4.141 22 C -0.108 4.108 23 C -0.098 4.098 24 C -0.064 4.064 25 C -0.093 4.093 26 O -0.557 6.557 27 Si 0.778 3.222 28 C -0.089 4.089 29 C -0.165 4.165 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.414 0.586 34 H 0.132 0.868 35 H 0.081 0.919 36 H 0.143 0.857 37 H 0.100 0.900 38 H 0.258 0.742 39 H 0.230 0.770 40 H 0.047 0.953 41 H 0.120 0.880 42 H 0.177 0.823 43 H 0.086 0.914 44 H 0.395 0.605 45 H -0.280 1.280 46 H -0.286 1.286 47 H 0.162 0.838 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.799 0.055 0.218 1.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.247 6.247 3 C 0.091 3.909 4 C -0.027 4.027 5 O -0.084 6.084 6 C -0.087 4.087 7 C 0.392 3.608 8 O -0.420 6.420 9 N -0.340 5.340 10 C 0.002 3.998 11 H 0.122 0.878 12 C -0.155 4.155 13 C -0.138 4.138 14 H 0.099 0.901 15 C 0.012 3.988 16 N -0.167 5.167 17 C -0.040 4.040 18 N -0.313 5.313 19 C -0.117 4.117 20 N -0.179 5.179 21 C -0.180 4.180 22 C -0.129 4.129 23 C -0.099 4.099 24 C -0.065 4.065 25 C -0.200 4.200 26 O -0.367 6.367 27 Si 0.681 3.319 28 C -0.107 4.107 29 C -0.183 4.183 30 H 0.134 0.866 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.250 0.750 34 H 0.151 0.849 35 H 0.100 0.900 36 H 0.161 0.839 37 H 0.118 0.882 38 H 0.274 0.726 39 H 0.246 0.754 40 H 0.066 0.934 41 H 0.138 0.862 42 H 0.194 0.806 43 H 0.104 0.896 44 H 0.245 0.755 45 H -0.207 1.207 46 H -0.213 1.213 47 H 0.179 0.821 48 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.181 0.110 0.772 2.316 hybrid contribution 0.424 0.334 0.798 0.964 sum -1.756 0.444 1.571 2.398 Atomic orbital electron populations 1.23498 0.75279 1.06055 1.03201 1.86146 1.24370 1.25723 1.88450 1.17966 0.86130 0.86831 1.00003 1.19199 0.88264 0.87095 1.08180 1.84011 1.12781 1.35092 1.76564 1.21976 0.84048 0.92826 1.09885 1.16615 0.84970 0.82706 0.76494 1.90881 1.31183 1.68151 1.51768 1.45592 1.10854 1.04869 1.72689 1.22093 0.85564 0.93695 0.98453 0.87779 1.23332 1.05206 0.91848 0.95164 1.22831 1.00218 0.93091 0.97690 0.90129 1.22260 1.01048 0.96033 0.79410 1.50749 1.03597 1.49189 1.13187 1.26878 1.01405 0.93763 0.81946 1.70545 1.01989 1.26527 1.32279 1.26428 0.96530 0.97602 0.91190 1.77945 0.98632 1.25211 1.16068 1.23566 1.02413 0.95705 0.96280 1.22857 0.95202 0.94416 1.00402 1.19599 0.92584 0.92727 1.05023 1.18669 0.93091 0.92278 1.02416 1.25152 1.06201 1.00674 0.87954 1.86571 1.77312 1.42591 1.30236 0.93941 0.76637 0.73761 0.87572 1.20844 0.93008 0.98813 0.98036 1.21358 1.01871 0.89460 1.05639 0.86573 0.90863 0.90368 0.74979 0.84949 0.90005 0.83939 0.88173 0.72615 0.75350 0.93411 0.86172 0.80585 0.89612 0.75476 1.20702 1.21278 0.82101 0.80140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.07 9.81 113.37 1.11 1.04 16 2 O -0.33 -1.54 10.50 -93.19 -0.98 -2.52 16 3 C 0.14 0.76 6.70 22.57 0.15 0.91 16 4 C 0.02 0.20 7.35 23.14 0.17 0.37 16 5 O -0.18 -1.89 10.28 -13.43 -0.14 -2.02 16 6 C -0.04 -0.36 7.07 24.00 0.17 -0.19 16 7 C 0.61 5.30 7.80 86.53 0.67 5.97 16 8 O -0.54 -7.47 16.42 -4.21 -0.07 -7.54 16 9 N -0.69 -1.81 5.26 -443.71 -2.33 -4.15 16 10 C 0.11 -0.20 4.33 45.52 0.20 0.00 16 11 H 0.10 0.02 7.46 -2.39 -0.02 0.00 16 12 C -0.12 0.94 7.39 31.12 0.23 1.17 16 13 C -0.12 0.64 3.75 -10.27 -0.04 0.60 16 14 H 0.08 0.03 8.00 -2.39 -0.02 0.01 16 15 C 0.13 -1.05 6.39 86.38 0.55 -0.49 16 16 N -0.38 0.02 3.69 -352.03 -1.30 -1.28 16 17 C 0.26 -0.16 12.63 180.36 2.28 2.11 16 18 N -0.59 -3.82 11.19 -204.00 -2.28 -6.10 16 19 C 0.19 1.12 13.03 180.77 2.36 3.48 16 20 N -0.35 -2.32 12.45 -61.25 -0.76 -3.08 16 21 C -0.14 0.52 7.43 31.12 0.23 0.75 16 22 C -0.11 -0.98 10.68 23.79 0.25 -0.72 16 23 C -0.10 -0.84 6.16 -20.24 -0.12 -0.96 16 24 C -0.06 -0.28 5.30 -19.87 -0.11 -0.39 16 25 C -0.09 -0.08 2.70 71.24 0.19 0.11 16 26 O -0.56 -2.06 12.86 -148.98 -1.92 -3.98 16 27 Si 0.78 -2.50 30.20 68.60 2.07 -0.43 16 28 C -0.09 -0.04 8.62 22.02 0.19 0.15 16 29 C -0.16 0.04 9.03 22.40 0.20 0.24 16 30 H 0.12 -0.88 8.14 -2.39 -0.02 -0.90 16 31 H 0.07 -0.57 7.66 -2.39 -0.02 -0.58 16 32 H 0.08 -0.66 7.66 -2.38 -0.02 -0.68 16 33 H 0.41 0.35 8.42 -92.71 -0.78 -0.43 16 34 H 0.13 -1.74 8.10 -2.39 -0.02 -1.76 16 35 H 0.08 -0.57 8.14 -2.38 -0.02 -0.59 16 36 H 0.14 -2.19 7.79 -2.38 -0.02 -2.21 16 37 H 0.10 -0.88 8.14 -2.39 -0.02 -0.90 16 38 H 0.26 -2.82 8.06 -2.91 -0.02 -2.84 16 39 H 0.23 0.10 8.06 -2.91 -0.02 0.08 16 40 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 41 H 0.12 -1.01 7.90 -2.38 -0.02 -1.02 16 42 H 0.18 1.22 8.06 -2.91 -0.02 1.20 16 43 H 0.09 -0.14 7.96 -2.39 -0.02 -0.15 16 44 H 0.39 -1.79 8.74 -74.06 -0.65 -2.44 16 45 H -0.28 -0.38 6.76 99.48 0.67 0.29 16 46 H -0.29 -0.35 7.11 99.48 0.71 0.36 16 47 H 0.16 -0.69 4.85 -2.91 -0.01 -0.70 16 48 H 0.18 -1.37 6.26 -2.91 -0.02 -1.39 16 Total: 0.00 -32.17 410.40 0.60 -31.56 By element: Atomic # 1 Polarization: -14.22 SS G_CDS: -0.38 Total: -14.60 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 8.69 Total: 14.14 kcal Atomic # 7 Polarization: -7.93 SS G_CDS: -6.68 Total: -14.61 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -3.10 Total: -16.07 kcal Atomic # 14 Polarization: -2.50 SS G_CDS: 2.07 Total: -0.43 kcal Total: -32.17 0.60 -31.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_6672420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.072 kcal (2) G-P(sol) polarization free energy of solvation -32.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds