Wall clock time and date at job start Sun Mar 7 2021 04:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33820 * 122.44585 * 2 1 4 4 C 1.50696 * 124.52678 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.47184 * 113.45667 * 4 3 2 6 6 Si 1.86301 * 109.47358 * 233.45785 * 4 3 2 7 7 S 1.70620 * 110.95158 * 180.02562 * 3 2 1 8 8 C 1.75832 * 91.56530 * 359.97438 * 7 3 2 9 9 C 1.46575 * 125.45950 * 179.97438 * 8 7 3 10 10 O 1.21700 * 120.00037 * 180.02562 * 9 8 7 11 11 N 1.34778 * 120.00194 * 0.02798 * 9 8 7 12 12 C 1.46495 * 120.00241 * 179.97438 * 11 9 8 13 13 H 1.08998 * 112.85016 * 336.19756 * 12 11 9 14 14 C 1.54052 * 113.61332 * 107.50951 * 12 11 9 15 15 C 1.53781 * 86.98846 * 89.11378 * 14 12 11 16 16 H 1.09000 * 113.61414 * 270.84004 * 15 14 12 17 17 C 1.52995 * 113.61484 * 140.01806 * 15 14 12 18 18 N 1.46500 * 109.46968 * 85.86496 * 17 15 14 19 19 C 1.34440 * 126.82391 * 124.70904 * 18 17 15 20 20 N 1.30827 * 108.07543 * 179.89479 * 19 18 17 21 21 C 1.33237 * 109.83369 * 0.38236 * 20 19 18 22 22 N 1.30716 * 108.94659 * 359.76266 * 21 20 19 23 23 C 1.53784 * 113.61601 * 205.00012 * 12 11 9 24 24 C 1.36648 * 109.08073 * 0.24510 * 8 7 3 25 25 H 1.09000 * 109.46969 * 85.01143 * 1 2 3 26 26 H 1.08997 * 109.46982 * 205.01120 * 1 2 3 27 27 H 1.08998 * 109.47088 * 325.01177 * 1 2 3 28 28 H 1.09005 * 109.46760 * 353.45760 * 4 3 2 29 29 H 0.96694 * 114.00310 * 180.02562 * 5 4 3 30 30 H 1.48497 * 109.99750 * 299.99623 * 6 4 3 31 31 H 1.48494 * 109.99984 * 61.31727 * 6 4 3 32 32 H 0.97005 * 119.99536 * 0.02562 * 11 9 8 33 33 H 1.09002 * 113.69124 * 334.60003 * 14 12 11 34 34 H 1.09003 * 113.61314 * 203.62192 * 14 12 11 35 35 H 1.08994 * 109.47373 * 205.86719 * 17 15 14 36 36 H 1.09004 * 109.47679 * 325.86653 * 17 15 14 37 37 H 1.08000 * 125.95704 * 0.04245 * 19 18 17 38 38 H 1.08001 * 125.52608 * 179.72730 * 21 20 19 39 39 H 1.09001 * 113.61295 * 156.33735 * 23 12 11 40 40 H 1.08993 * 113.61576 * 25.42964 * 23 12 11 41 41 H 1.07998 * 123.35071 * 179.76146 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1293 0.0000 4 6 1.6355 2.5162 0.0006 5 8 1.9432 3.1641 1.2365 6 14 2.3545 3.4972 -1.4106 7 16 3.8969 0.7893 -0.0007 8 6 3.5937 -0.9427 -0.0002 9 6 4.6231 -1.9861 -0.0010 10 8 4.3002 -3.1595 -0.0011 11 7 5.9273 -1.6462 -0.0017 12 6 6.9562 -2.6890 -0.0019 13 1 6.5994 -3.6357 0.4038 14 6 7.6913 -2.8303 -1.3484 15 6 8.6821 -1.7769 -0.8255 16 1 8.3884 -0.7516 -1.0505 17 6 10.1386 -2.0713 -1.1899 18 7 10.4279 -1.5308 -2.5204 19 6 11.4094 -0.6713 -2.8450 20 7 11.3342 -0.4356 -4.1297 21 6 10.3170 -1.1168 -4.6555 22 7 9.7312 -1.8026 -3.7093 23 6 8.2982 -2.2306 0.5929 24 6 2.2447 -1.1600 -0.0051 25 1 -0.3633 0.0894 -1.0238 26 1 -0.3633 -0.9313 0.4345 27 1 -0.3633 0.8419 0.5893 28 1 0.5536 2.4512 -0.1162 29 1 1.5938 4.0629 1.3071 30 1 3.8290 3.5931 -1.2631 31 1 2.0143 2.8510 -2.7036 32 1 6.1847 -0.7109 -0.0013 33 1 7.1065 -2.4929 -2.2041 34 1 8.1384 -3.8127 -1.5007 35 1 10.7977 -1.6056 -0.4573 36 1 10.3019 -3.1490 -1.1922 37 1 12.1350 -0.2509 -2.1645 38 1 10.0236 -1.1040 -5.6948 39 1 8.9109 -3.0493 0.9702 40 1 8.2032 -1.4094 1.3031 41 1 1.8020 -2.1451 -0.0096 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688106_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:43:31 Heat of formation + Delta-G solvation = 87.095531 kcal Electronic energy + Delta-G solvation = -25640.764072 eV Core-core repulsion = 21845.006860 eV Total energy + Delta-G solvation = -3795.757212 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.99483 -41.41596 -40.12739 -39.22282 -37.59439 -35.49147 -34.00741 -32.47404 -32.12807 -30.04900 -29.31337 -26.91955 -26.86202 -24.83011 -24.04277 -22.89808 -22.45756 -22.04818 -20.56649 -19.96702 -19.26591 -18.57448 -18.33658 -17.47987 -17.17807 -16.86771 -16.35396 -16.12959 -16.01154 -15.83364 -15.44782 -15.32829 -15.09825 -14.79093 -14.72784 -14.39907 -14.30475 -14.17133 -13.67517 -13.39542 -13.27296 -13.18574 -13.00852 -12.96180 -12.68065 -12.38774 -12.30469 -11.87700 -11.84114 -11.46099 -11.14883 -10.92737 -10.73271 -10.68848 -10.62239 -10.22574 -9.80175 -9.50953 -5.24507 -0.69843 0.28228 0.68160 0.69978 1.00461 1.23983 1.30743 1.49292 1.81842 1.90501 2.05543 2.10717 3.08461 3.09420 3.23924 3.38981 3.43208 3.55180 3.64692 3.69005 3.82567 3.93993 3.97238 4.01810 4.09096 4.19218 4.31168 4.37898 4.38354 4.47502 4.53789 4.59612 4.62325 4.74686 4.80295 4.90015 4.94622 4.99465 5.18650 5.28772 5.29926 5.42062 5.49029 5.81386 6.27469 6.40525 7.03729 7.14628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.098 4.098 3 C -0.189 4.189 4 C -0.039 4.039 5 O -0.544 6.544 6 Si 0.673 3.327 7 S 0.211 5.789 8 C -0.266 4.266 9 C 0.597 3.403 10 O -0.521 6.521 11 N -0.711 5.711 12 C 0.119 3.881 13 H 0.111 0.889 14 C -0.134 4.134 15 C -0.124 4.124 16 H 0.094 0.906 17 C 0.138 3.862 18 N -0.379 5.379 19 C 0.251 3.749 20 N -0.547 5.547 21 C 0.196 3.804 22 N -0.312 5.312 23 C -0.136 4.136 24 C -0.044 4.044 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.387 0.613 30 H -0.241 1.241 31 H -0.249 1.249 32 H 0.398 0.602 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.218 0.782 38 H 0.216 0.784 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 5.205 2.921 5.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.112 4.112 3 C -0.308 4.308 4 C -0.151 4.151 5 O -0.351 6.351 6 Si 0.572 3.428 7 S 0.481 5.519 8 C -0.387 4.387 9 C 0.384 3.616 10 O -0.398 6.398 11 N -0.362 5.362 12 C 0.014 3.986 13 H 0.129 0.871 14 C -0.172 4.172 15 C -0.143 4.143 16 H 0.112 0.888 17 C 0.016 3.984 18 N -0.170 5.170 19 C -0.046 4.046 20 N -0.274 5.274 21 C -0.107 4.107 22 N -0.140 5.140 23 C -0.175 4.175 24 C -0.077 4.077 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.235 0.765 30 H -0.165 1.165 31 H -0.173 1.173 32 H 0.232 0.768 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.234 0.766 38 H 0.232 0.768 39 H 0.123 0.877 40 H 0.099 0.901 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.095 4.389 2.122 4.997 hybrid contribution -1.158 -0.744 0.427 1.441 sum -0.063 3.646 2.549 4.449 Atomic orbital electron populations 1.20613 0.88755 1.03649 1.02792 1.18720 0.98345 0.90646 1.03469 1.23215 0.98509 0.98316 1.10743 1.24131 1.02968 0.91624 0.96402 1.86507 1.80110 1.32871 1.35587 0.95458 0.82598 0.88216 0.76573 1.83038 1.03757 0.97770 1.67346 1.24597 0.98145 0.97163 1.18765 1.16874 0.81460 0.87398 0.75900 1.90859 1.81490 1.18060 1.49356 1.45509 1.05106 1.09704 1.75853 1.21926 0.86840 0.92335 0.97516 0.87128 1.23462 0.96949 0.99288 0.97525 1.22921 0.93568 1.00747 0.97110 0.88783 1.21912 0.97523 1.00599 0.78383 1.50600 1.23391 1.34605 1.08384 1.26130 0.93061 0.91520 0.93853 1.70558 1.22379 1.27577 1.06861 1.26070 0.91140 0.92979 1.00522 1.78098 1.19986 1.24795 0.91073 1.23359 0.96066 1.02454 0.95609 1.20685 0.90842 1.00030 0.96128 0.90692 0.90697 0.90832 0.89383 0.76471 1.16470 1.17251 0.76786 0.90495 0.88599 0.87709 0.88834 0.76574 0.76765 0.87742 0.90115 0.82349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.07 9.48 36.01 0.34 0.42 16 2 C -0.10 -0.17 5.78 -106.45 -0.62 -0.78 16 3 C -0.19 -0.34 4.86 -35.86 -0.17 -0.51 16 4 C -0.04 0.03 2.76 36.00 0.10 0.13 16 5 O -0.54 0.42 12.86 -35.23 -0.45 -0.03 16 6 Si 0.67 -0.95 32.14 -169.99 -5.46 -6.41 16 7 S 0.21 0.36 20.84 -107.50 -2.24 -1.88 16 8 C -0.27 -0.81 6.45 -36.80 -0.24 -1.05 16 9 C 0.60 2.31 7.78 -12.90 -0.10 2.21 16 10 O -0.52 -3.69 16.44 5.19 0.09 -3.61 16 11 N -0.71 -0.64 5.26 -54.22 -0.29 -0.93 16 12 C 0.12 -0.03 4.33 -66.98 -0.29 -0.32 16 13 H 0.11 0.12 7.46 -51.93 -0.39 -0.26 16 14 C -0.13 0.05 7.45 -25.78 -0.19 -0.15 16 15 C -0.12 0.30 3.72 -89.81 -0.33 -0.04 16 16 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 17 C 0.14 -0.43 6.37 -4.04 -0.03 -0.45 16 18 N -0.38 -0.08 3.69 -62.63 -0.23 -0.31 16 19 C 0.25 0.00 12.63 -90.65 -1.14 -1.14 16 20 N -0.55 -1.65 11.19 -15.83 -0.18 -1.83 16 21 C 0.20 0.49 13.03 -91.81 -1.20 -0.71 16 22 N -0.31 -0.89 12.57 29.29 0.37 -0.52 16 23 C -0.14 0.46 7.39 -25.91 -0.19 0.26 16 24 C -0.04 -0.12 9.78 -40.44 -0.40 -0.51 16 25 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 26 H 0.07 -0.10 8.11 -51.93 -0.42 -0.52 16 27 H 0.07 -0.11 6.98 -51.93 -0.36 -0.47 16 28 H 0.09 -0.23 6.24 -51.93 -0.32 -0.55 16 29 H 0.39 -2.28 8.74 45.56 0.40 -1.88 16 30 H -0.24 -0.30 7.11 56.52 0.40 0.11 16 31 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 32 H 0.40 -0.31 7.81 -40.82 -0.32 -0.62 16 33 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.10 -0.06 7.92 -51.93 -0.41 -0.48 16 35 H 0.10 -0.62 8.09 -51.93 -0.42 -1.04 16 36 H 0.09 -0.32 7.88 -51.93 -0.41 -0.73 16 37 H 0.22 -0.96 8.06 -52.49 -0.42 -1.38 16 38 H 0.22 -0.09 8.06 -52.49 -0.42 -0.51 16 39 H 0.10 -0.50 8.10 -51.93 -0.42 -0.92 16 40 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 41 H 0.16 0.33 8.06 -52.49 -0.42 -0.10 16 LS Contribution 365.07 15.07 5.50 5.50 Total: 0.00 -11.48 365.07 -12.58 -24.07 By element: Atomic # 1 Polarization: -6.18 SS G_CDS: -5.23 Total: -11.41 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -4.46 Total: -2.65 kcal Atomic # 7 Polarization: -3.26 SS G_CDS: -0.33 Total: -3.59 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: -0.37 Total: -3.64 kcal Atomic # 14 Polarization: -0.95 SS G_CDS: -5.46 Total: -6.41 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -2.24 Total: -1.88 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -11.48 -12.58 -24.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.164 kcal (2) G-P(sol) polarization free energy of solvation -11.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds