Wall clock time and date at job start Sun Mar 7 2021 04:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33820 * 122.44585 * 2 1 4 4 C 1.50696 * 124.52678 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.47184 * 113.45667 * 4 3 2 6 6 Si 1.86301 * 109.47358 * 233.45785 * 4 3 2 7 7 S 1.70620 * 110.95158 * 180.02562 * 3 2 1 8 8 C 1.75832 * 91.56530 * 359.97438 * 7 3 2 9 9 C 1.46575 * 125.45950 * 179.97438 * 8 7 3 10 10 O 1.21700 * 120.00037 * 180.02562 * 9 8 7 11 11 N 1.34778 * 120.00194 * 0.02798 * 9 8 7 12 12 C 1.46495 * 120.00241 * 179.97438 * 11 9 8 13 13 H 1.08998 * 112.85016 * 336.19756 * 12 11 9 14 14 C 1.54052 * 113.61332 * 107.50951 * 12 11 9 15 15 C 1.53781 * 86.98846 * 89.11378 * 14 12 11 16 16 H 1.09000 * 113.61414 * 270.84004 * 15 14 12 17 17 C 1.52995 * 113.61484 * 140.01806 * 15 14 12 18 18 N 1.46500 * 109.46968 * 85.86496 * 17 15 14 19 19 C 1.34440 * 126.82391 * 124.70904 * 18 17 15 20 20 N 1.30827 * 108.07543 * 179.89479 * 19 18 17 21 21 C 1.33237 * 109.83369 * 0.38236 * 20 19 18 22 22 N 1.30716 * 108.94659 * 359.76266 * 21 20 19 23 23 C 1.53784 * 113.61601 * 205.00012 * 12 11 9 24 24 C 1.36648 * 109.08073 * 0.24510 * 8 7 3 25 25 H 1.09000 * 109.46969 * 85.01143 * 1 2 3 26 26 H 1.08997 * 109.46982 * 205.01120 * 1 2 3 27 27 H 1.08998 * 109.47088 * 325.01177 * 1 2 3 28 28 H 1.09005 * 109.46760 * 353.45760 * 4 3 2 29 29 H 0.96694 * 114.00310 * 180.02562 * 5 4 3 30 30 H 1.48497 * 109.99750 * 299.99623 * 6 4 3 31 31 H 1.48494 * 109.99984 * 61.31727 * 6 4 3 32 32 H 0.97005 * 119.99536 * 0.02562 * 11 9 8 33 33 H 1.09002 * 113.69124 * 334.60003 * 14 12 11 34 34 H 1.09003 * 113.61314 * 203.62192 * 14 12 11 35 35 H 1.08994 * 109.47373 * 205.86719 * 17 15 14 36 36 H 1.09004 * 109.47679 * 325.86653 * 17 15 14 37 37 H 1.08000 * 125.95704 * 0.04245 * 19 18 17 38 38 H 1.08001 * 125.52608 * 179.72730 * 21 20 19 39 39 H 1.09001 * 113.61295 * 156.33735 * 23 12 11 40 40 H 1.08993 * 113.61576 * 25.42964 * 23 12 11 41 41 H 1.07998 * 123.35071 * 179.76146 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2249 1.1293 0.0000 4 6 1.6355 2.5162 0.0006 5 8 1.9432 3.1641 1.2365 6 14 2.3545 3.4972 -1.4106 7 16 3.8969 0.7893 -0.0007 8 6 3.5937 -0.9427 -0.0002 9 6 4.6231 -1.9861 -0.0010 10 8 4.3002 -3.1595 -0.0011 11 7 5.9273 -1.6462 -0.0017 12 6 6.9562 -2.6890 -0.0019 13 1 6.5994 -3.6357 0.4038 14 6 7.6913 -2.8303 -1.3484 15 6 8.6821 -1.7769 -0.8255 16 1 8.3884 -0.7516 -1.0505 17 6 10.1386 -2.0713 -1.1899 18 7 10.4279 -1.5308 -2.5204 19 6 11.4094 -0.6713 -2.8450 20 7 11.3342 -0.4356 -4.1297 21 6 10.3170 -1.1168 -4.6555 22 7 9.7312 -1.8026 -3.7093 23 6 8.2982 -2.2306 0.5929 24 6 2.2447 -1.1600 -0.0051 25 1 -0.3633 0.0894 -1.0238 26 1 -0.3633 -0.9313 0.4345 27 1 -0.3633 0.8419 0.5893 28 1 0.5536 2.4512 -0.1162 29 1 1.5938 4.0629 1.3071 30 1 3.8290 3.5931 -1.2631 31 1 2.0143 2.8510 -2.7036 32 1 6.1847 -0.7109 -0.0013 33 1 7.1065 -2.4929 -2.2041 34 1 8.1384 -3.8127 -1.5007 35 1 10.7977 -1.6056 -0.4573 36 1 10.3019 -3.1490 -1.1922 37 1 12.1350 -0.2509 -2.1645 38 1 10.0236 -1.1040 -5.6948 39 1 8.9109 -3.0493 0.9702 40 1 8.2032 -1.4094 1.3031 41 1 1.8020 -2.1451 -0.0096 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:43:30 Heat of formation + Delta-G solvation = 86.948912 kcal Electronic energy + Delta-G solvation = -25640.770430 eV Core-core repulsion = 21845.006860 eV Total energy + Delta-G solvation = -3795.763570 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.00979 -41.53797 -40.18212 -39.33674 -37.53760 -35.54636 -34.11655 -32.55067 -32.18548 -30.02630 -29.25466 -26.93834 -26.79357 -24.83170 -24.09292 -22.88682 -22.45652 -22.20448 -20.58298 -20.01461 -19.40643 -18.48039 -18.27341 -17.54716 -17.28538 -16.82478 -16.49647 -16.25080 -16.00843 -15.87068 -15.42567 -15.32143 -15.16994 -14.79987 -14.71069 -14.43467 -14.33041 -14.10833 -13.58349 -13.40430 -13.23743 -13.19703 -13.05689 -12.90220 -12.71083 -12.38107 -12.27555 -11.95867 -11.84071 -11.45909 -11.35724 -11.00329 -10.82052 -10.65786 -10.59852 -10.35618 -9.91153 -9.61420 -5.16836 -0.86904 0.14253 0.56623 0.68312 0.95724 1.20750 1.43143 1.53447 1.78579 1.85992 1.86880 1.98531 3.18192 3.24126 3.34851 3.47836 3.50928 3.57347 3.69113 3.77892 3.90082 3.93639 4.08372 4.11013 4.16180 4.30395 4.36700 4.41958 4.53073 4.55412 4.62521 4.68948 4.72542 4.75689 4.86933 4.88813 4.94951 5.01838 5.15358 5.27068 5.28385 5.41226 5.43079 5.92893 6.12279 6.80780 6.81711 7.11182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.106 4.106 3 C -0.202 4.202 4 C -0.044 4.044 5 O -0.559 6.559 6 Si 0.759 3.241 7 S 0.216 5.784 8 C -0.286 4.286 9 C 0.593 3.407 10 O -0.564 6.564 11 N -0.699 5.699 12 C 0.105 3.895 13 H 0.094 0.906 14 C -0.136 4.136 15 C -0.113 4.113 16 H 0.085 0.915 17 C 0.132 3.868 18 N -0.379 5.379 19 C 0.256 3.744 20 N -0.585 5.585 21 C 0.183 3.817 22 N -0.345 5.345 23 C -0.113 4.113 24 C -0.053 4.053 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.113 0.887 29 H 0.409 0.591 30 H -0.278 1.278 31 H -0.290 1.290 32 H 0.406 0.594 33 H 0.045 0.955 34 H 0.098 0.902 35 H 0.145 0.855 36 H 0.099 0.901 37 H 0.260 0.740 38 H 0.228 0.772 39 H 0.128 0.872 40 H 0.093 0.907 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.057 6.653 4.387 7.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.119 4.119 3 C -0.321 4.321 4 C -0.155 4.155 5 O -0.370 6.370 6 Si 0.663 3.337 7 S 0.485 5.515 8 C -0.406 4.406 9 C 0.380 3.620 10 O -0.445 6.445 11 N -0.350 5.350 12 C 0.000 4.000 13 H 0.112 0.888 14 C -0.175 4.175 15 C -0.132 4.132 16 H 0.103 0.897 17 C 0.012 3.988 18 N -0.169 5.169 19 C -0.040 4.040 20 N -0.313 5.313 21 C -0.120 4.120 22 N -0.173 5.173 23 C -0.151 4.151 24 C -0.087 4.087 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.130 0.870 29 H 0.261 0.739 30 H -0.205 1.205 31 H -0.217 1.217 32 H 0.242 0.758 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.163 0.837 36 H 0.118 0.882 37 H 0.275 0.725 38 H 0.244 0.756 39 H 0.146 0.854 40 H 0.111 0.889 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 1.618 5.880 3.625 7.095 hybrid contribution -1.308 -1.169 -0.044 1.755 sum 0.310 4.712 3.581 5.926 Atomic orbital electron populations 1.20696 0.86933 1.04428 1.03719 1.18969 0.99688 0.90105 1.03131 1.23683 0.98350 0.99831 1.10257 1.24255 1.04296 0.90241 0.96698 1.86460 1.80636 1.34725 1.35188 0.94581 0.79385 0.86270 0.73501 1.82920 1.04525 0.96612 1.67405 1.24627 0.98241 0.97839 1.19872 1.17104 0.82443 0.87034 0.75434 1.90821 1.82240 1.19634 1.51763 1.45484 1.04536 1.10527 1.74410 1.22115 0.87852 0.91727 0.98308 0.88817 1.23442 0.97553 1.00248 0.96211 1.22784 0.93733 0.99339 0.97377 0.89717 1.22246 0.97484 1.01443 0.77665 1.50776 1.23081 1.34490 1.08574 1.26922 0.93001 0.90440 0.93594 1.70537 1.23219 1.28875 1.08644 1.26421 0.91254 0.93019 1.01313 1.78024 1.21283 1.25754 0.92264 1.23304 0.93422 1.03353 0.95049 1.20882 0.91059 1.00608 0.96141 0.89661 0.90320 0.89613 0.86963 0.73858 1.20475 1.21713 0.75764 0.93597 0.88356 0.83692 0.88245 0.72453 0.75571 0.85431 0.88885 0.82544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.20 9.48 71.24 0.68 0.88 16 2 C -0.11 -0.41 5.78 -21.05 -0.12 -0.54 16 3 C -0.20 -0.76 4.86 24.68 0.12 -0.64 16 4 C -0.04 0.11 2.76 71.23 0.20 0.31 16 5 O -0.56 1.67 12.86 -148.98 -1.92 -0.25 16 6 Si 0.76 -2.31 32.14 68.60 2.20 -0.11 16 7 S 0.22 0.97 20.84 -56.49 -1.18 -0.20 16 8 C -0.29 -2.32 6.45 24.07 0.16 -2.16 16 9 C 0.59 6.09 7.78 86.42 0.67 6.76 16 10 O -0.56 -9.81 16.44 -4.35 -0.07 -9.88 16 11 N -0.70 -2.49 5.26 -443.66 -2.33 -4.82 16 12 C 0.10 0.07 4.33 45.61 0.20 0.27 16 13 H 0.09 0.41 7.46 -2.39 -0.02 0.39 16 14 C -0.14 -0.11 7.45 31.21 0.23 0.12 16 15 C -0.11 0.59 3.72 -10.27 -0.04 0.55 16 16 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 17 C 0.13 -1.03 6.37 86.38 0.55 -0.48 16 18 N -0.38 0.04 3.69 -352.06 -1.30 -1.26 16 19 C 0.26 -0.26 12.63 180.36 2.28 2.02 16 20 N -0.58 -3.73 11.19 -204.00 -2.28 -6.01 16 21 C 0.18 1.15 13.03 180.77 2.36 3.50 16 22 N -0.34 -2.36 12.57 -61.25 -0.77 -3.13 16 23 C -0.11 0.88 7.39 31.12 0.23 1.11 16 24 C -0.05 -0.38 9.78 21.72 0.21 -0.17 16 25 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 26 H 0.08 -0.21 8.11 -2.39 -0.02 -0.23 16 27 H 0.09 -0.38 6.98 -2.39 -0.02 -0.40 16 28 H 0.11 -0.81 6.24 -2.38 -0.01 -0.82 16 29 H 0.41 -5.64 8.74 -74.06 -0.65 -6.29 16 30 H -0.28 -0.85 7.11 99.48 0.71 -0.15 16 31 H -0.29 -1.12 7.11 99.48 0.71 -0.42 16 32 H 0.41 -0.12 7.81 -92.70 -0.72 -0.84 16 33 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.10 0.00 7.92 -2.39 -0.02 -0.01 16 35 H 0.15 -2.26 8.09 -2.39 -0.02 -2.28 16 36 H 0.10 -0.84 7.88 -2.38 -0.02 -0.85 16 37 H 0.26 -2.99 8.06 -2.91 -0.02 -3.01 16 38 H 0.23 0.24 8.06 -2.91 -0.02 0.22 16 39 H 0.13 -1.52 8.10 -2.39 -0.02 -1.54 16 40 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 41 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 Total: 0.00 -30.38 365.07 -0.18 -30.56 By element: Atomic # 1 Polarization: -16.18 SS G_CDS: -0.25 Total: -16.43 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 7.72 Total: 11.54 kcal Atomic # 7 Polarization: -8.53 SS G_CDS: -6.69 Total: -15.21 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -1.99 Total: -10.13 kcal Atomic # 14 Polarization: -2.31 SS G_CDS: 2.20 Total: -0.11 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -1.18 Total: -0.20 kcal Total: -30.38 -0.18 -30.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.505 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds