Wall clock time and date at job start Sun Mar 7 2021 04:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37930 * 120.07377 * 2 1 4 4 C 1.38381 * 120.14422 * 179.76591 * 3 2 1 5 5 C 1.50707 * 119.85380 * 180.27565 * 4 3 2 6 6 C 1.38337 * 120.29672 * 0.50665 * 4 3 2 7 7 C 1.50695 * 119.93184 * 179.76652 * 6 4 3 8 8 O 1.42904 * 109.47084 * 284.72194 * 7 6 4 9 9 Si 1.86298 * 109.47058 * 164.72824 * 7 6 4 10 10 C 1.37986 * 120.13724 * 359.49092 * 6 4 3 11 11 C 1.39552 * 119.85710 * 0.25477 * 10 6 4 12 12 C 1.47842 * 120.14777 * 180.02562 * 11 10 6 13 13 O 1.21546 * 120.00306 * 173.74794 * 12 11 10 14 14 N 1.34779 * 119.99891 * 353.75259 * 12 11 10 15 15 C 1.46493 * 120.00080 * 180.02562 * 14 12 11 16 16 H 1.09001 * 112.85073 * 23.79899 * 15 14 12 17 17 C 1.53778 * 113.61690 * 154.99712 * 15 14 12 18 18 C 1.53782 * 87.08210 * 89.11453 * 17 15 14 19 19 H 1.09005 * 113.61581 * 270.88436 * 18 17 15 20 20 C 1.52995 * 113.61590 * 140.06471 * 18 17 15 21 21 N 1.46504 * 109.47372 * 175.00014 * 20 18 17 22 22 C 1.34428 * 126.82553 * 125.00076 * 21 20 18 23 23 N 1.30824 * 108.08027 * 179.97438 * 22 21 20 24 24 C 1.33248 * 109.82824 * 0.02562 * 23 22 21 25 25 N 1.30711 * 108.94631 * 359.75015 * 24 23 22 26 26 C 1.53780 * 87.08292 * 25.43350 * 18 17 15 27 27 H 1.09000 * 109.47623 * 263.39318 * 1 2 3 28 28 H 1.09002 * 109.47264 * 23.39353 * 1 2 3 29 29 H 1.09003 * 109.47089 * 143.39196 * 1 2 3 30 30 H 1.07997 * 119.92871 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.46808 * 270.23356 * 5 4 3 32 32 H 1.08995 * 109.47332 * 30.23216 * 5 4 3 33 33 H 1.09003 * 109.47204 * 150.23399 * 5 4 3 34 34 H 1.08992 * 109.47132 * 44.72475 * 7 6 4 35 35 H 0.96704 * 113.99474 * 60.00016 * 8 7 6 36 36 H 1.48500 * 109.99885 * 299.99801 * 9 7 6 37 37 H 1.48501 * 110.00409 * 61.31965 * 9 7 6 38 38 H 1.08002 * 120.06843 * 180.27595 * 10 6 4 39 39 H 0.97002 * 120.00042 * 359.97438 * 14 12 11 40 40 H 1.09005 * 113.61552 * 203.66417 * 17 15 14 41 41 H 1.08999 * 113.61715 * 334.56606 * 17 15 14 42 42 H 1.08998 * 109.47797 * 295.00165 * 20 18 17 43 43 H 1.09005 * 109.46959 * 55.00550 * 20 18 17 44 44 H 1.08003 * 125.95636 * 359.97438 * 22 21 20 45 45 H 1.08005 * 125.52576 * 180.02562 * 24 23 22 46 46 H 1.08996 * 113.61621 * 220.02122 * 26 18 17 47 47 H 1.09007 * 113.61407 * 89.11346 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1936 0.0000 4 6 3.5820 1.1953 0.0049 5 6 4.3305 2.5033 0.0111 6 6 4.2813 0.0018 -0.0008 7 6 5.7882 0.0133 -0.0007 8 8 6.2620 0.3654 -1.3021 9 14 6.4221 -1.6785 0.4540 10 6 3.6020 -1.1993 -0.0007 11 6 2.2065 -1.2081 -0.0003 12 6 1.4721 -2.4912 0.0003 13 8 0.2621 -2.4989 0.1152 14 7 2.1444 -3.6525 -0.1265 15 6 1.4167 -4.9239 -0.1265 16 1 0.3753 -4.8156 -0.4295 17 6 2.1562 -6.0570 -0.8572 18 6 2.8276 -6.3801 0.4880 19 1 3.7549 -5.8322 0.6560 20 6 2.9660 -7.8794 0.7595 21 7 3.7192 -8.0837 1.9994 22 6 3.3282 -8.7935 3.0720 23 7 4.2800 -8.7334 3.9675 24 6 5.2898 -7.9971 3.5052 25 7 4.9954 -7.5812 2.3015 26 6 1.6032 -5.7403 1.1634 27 1 -0.3634 -0.1182 1.0208 28 1 -0.3634 0.9432 -0.4080 29 1 -0.3633 -0.8250 -0.6128 30 1 1.6582 2.1289 0.0004 31 1 4.5110 2.8235 -1.0150 32 1 3.7386 3.2583 0.5286 33 1 5.2835 2.3742 0.5244 34 1 6.1460 0.7427 0.7259 35 1 5.9699 1.2363 -1.6046 36 1 5.9364 -2.0566 1.8054 37 1 5.9677 -2.6771 -0.5468 38 1 4.1491 -2.1304 -0.0006 39 1 3.1100 -3.6464 -0.2186 40 1 1.4974 -6.8473 -1.2174 41 1 2.8517 -5.7046 -1.6189 42 1 1.9757 -8.3237 0.8587 43 1 3.4947 -8.3513 -0.0687 44 1 2.3917 -9.3213 3.1762 45 1 6.2052 -7.7829 4.0369 46 1 1.8522 -5.1321 2.0329 47 1 0.7932 -6.4440 1.3557 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_9599494.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:43:44 Heat of formation + Delta-G solvation = 81.669993 kcal Electronic energy + Delta-G solvation = -29883.887731 eV Core-core repulsion = 25843.205385 eV Total energy + Delta-G solvation = -4040.682346 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.03228 -42.00483 -40.82843 -39.54129 -37.64941 -35.68894 -34.48755 -34.38904 -33.13668 -32.20525 -29.74035 -29.06835 -28.45197 -26.86368 -25.72780 -24.78206 -23.92346 -23.06420 -22.86831 -22.35819 -21.19000 -20.29498 -19.11643 -18.39494 -18.28959 -17.38782 -17.07637 -16.71826 -16.59501 -16.47938 -16.29169 -16.00237 -15.74310 -15.31854 -15.24090 -15.04762 -15.01358 -14.76718 -14.59761 -14.14409 -13.97312 -13.85014 -13.57844 -13.51304 -13.33053 -13.06991 -12.92706 -12.84796 -12.76910 -12.66481 -12.36186 -12.22238 -11.85310 -11.55352 -11.39378 -11.18205 -11.01524 -10.85835 -10.83134 -10.57561 -10.33339 -10.06367 -9.77413 -4.93838 -0.44830 -0.00880 0.66081 1.25272 1.40115 1.49804 1.57803 1.80564 1.84000 1.97381 2.46231 3.24182 3.28890 3.35988 3.37067 3.40412 3.42746 3.49960 3.65140 3.68184 3.78653 3.85507 3.96158 4.02992 4.08591 4.11437 4.28946 4.39165 4.41011 4.43875 4.45031 4.54529 4.55623 4.63629 4.65943 4.68041 4.70949 4.74480 4.83856 4.89029 4.91670 4.97727 5.05075 5.16331 5.26403 5.30294 5.34104 5.42117 5.42332 5.66418 5.90456 6.16411 6.59700 6.88984 7.09164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.027 4.027 3 C -0.130 4.130 4 C -0.036 4.036 5 C -0.130 4.130 6 C -0.139 4.139 7 C -0.081 4.081 8 O -0.543 6.543 9 Si 0.791 3.209 10 C -0.089 4.089 11 C -0.164 4.164 12 C 0.557 3.443 13 O -0.553 6.553 14 N -0.708 5.708 15 C 0.108 3.892 16 H 0.100 0.900 17 C -0.119 4.119 18 C -0.119 4.119 19 H 0.076 0.924 20 C 0.134 3.866 21 N -0.378 5.378 22 C 0.257 3.743 23 N -0.585 5.585 24 C 0.187 3.813 25 N -0.352 5.352 26 C -0.141 4.141 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.157 0.843 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.376 0.624 36 H -0.277 1.277 37 H -0.283 1.283 38 H 0.120 0.880 39 H 0.401 0.599 40 H 0.133 0.867 41 H 0.078 0.922 42 H 0.143 0.857 43 H 0.101 0.899 44 H 0.258 0.742 45 H 0.232 0.768 46 H 0.043 0.957 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.289 1.597 -2.508 3.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.028 4.028 3 C -0.148 4.148 4 C -0.037 4.037 5 C -0.186 4.186 6 C -0.140 4.140 7 C -0.190 4.190 8 O -0.350 6.350 9 Si 0.694 3.306 10 C -0.108 4.108 11 C -0.168 4.168 12 C 0.347 3.653 13 O -0.433 6.433 14 N -0.359 5.359 15 C 0.003 3.997 16 H 0.118 0.882 17 C -0.157 4.157 18 C -0.138 4.138 19 H 0.095 0.905 20 C 0.014 3.986 21 N -0.168 5.168 22 C -0.039 4.039 23 N -0.313 5.313 24 C -0.116 4.116 25 N -0.180 5.180 26 C -0.180 4.180 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.175 0.825 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.226 0.774 36 H -0.203 1.203 37 H -0.210 1.210 38 H 0.138 0.862 39 H 0.237 0.763 40 H 0.151 0.849 41 H 0.097 0.903 42 H 0.161 0.839 43 H 0.119 0.881 44 H 0.274 0.726 45 H 0.248 0.752 46 H 0.062 0.938 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.913 0.482 -2.388 2.602 hybrid contribution -0.968 0.876 -0.044 1.307 sum -0.055 1.358 -2.432 2.786 Atomic orbital electron populations 1.21025 0.89573 1.03573 1.03124 1.20293 0.97331 0.91733 0.93397 1.21315 0.93770 0.98066 1.01604 1.20358 0.93739 0.95870 0.93688 1.21114 1.00785 0.92135 1.04538 1.20328 0.97185 0.92792 1.03674 1.25273 0.89988 1.14497 0.89245 1.86748 1.75290 1.41131 1.31870 0.92427 0.90678 0.71384 0.76130 1.21169 0.93122 0.98087 0.98380 1.19738 0.93411 0.93488 1.10115 1.18444 0.86899 0.84292 0.75687 1.90718 1.14513 1.87480 1.50605 1.45678 1.10826 1.05514 1.73864 1.21998 0.97452 0.82163 0.98040 0.88157 1.23339 0.99488 0.97540 0.95335 1.22814 0.98052 0.95073 0.97903 0.90540 1.22235 0.97209 0.96578 0.82612 1.50735 1.12571 1.37655 1.15867 1.26878 1.00614 0.93894 0.82532 1.70548 1.03380 1.24614 1.32711 1.26459 0.99956 0.94418 0.90745 1.77940 0.97411 1.24318 1.18376 1.23556 0.98679 0.99352 0.96397 0.91147 0.90074 0.90480 0.82536 0.88397 0.89562 0.89669 0.87990 0.77390 1.20303 1.21029 0.86250 0.76272 0.84914 0.90295 0.83911 0.88067 0.72629 0.75176 0.93806 0.86269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 8.73 71.23 0.62 -0.06 16 2 C -0.03 -0.17 5.91 -19.61 -0.12 -0.28 16 3 C -0.13 -0.21 9.31 22.23 0.21 0.00 16 4 C -0.04 0.00 5.87 -19.80 -0.12 -0.12 16 5 C -0.13 0.91 8.74 71.24 0.62 1.54 16 6 C -0.14 -0.38 5.26 -19.90 -0.10 -0.49 16 7 C -0.08 0.07 2.09 71.23 0.15 0.22 16 8 O -0.54 0.25 12.65 -148.98 -1.89 -1.63 16 9 Si 0.79 0.28 30.40 68.60 2.09 2.37 16 10 C -0.09 -0.54 8.13 22.53 0.18 -0.36 16 11 C -0.16 -1.35 5.87 -20.09 -0.12 -1.47 16 12 C 0.56 5.39 7.70 86.78 0.67 6.05 16 13 O -0.55 -7.89 12.95 -3.86 -0.05 -7.94 16 14 N -0.71 -3.15 5.21 -442.92 -2.31 -5.46 16 15 C 0.11 0.02 4.32 45.52 0.20 0.21 16 16 H 0.10 0.25 7.46 -2.39 -0.02 0.23 16 17 C -0.12 0.74 7.39 31.12 0.23 0.97 16 18 C -0.12 0.45 3.75 -10.27 -0.04 0.41 16 19 H 0.08 0.15 8.01 -2.38 -0.02 0.13 16 20 C 0.13 -0.92 6.39 86.38 0.55 -0.37 16 21 N -0.38 -0.23 3.69 -352.06 -1.30 -1.53 16 22 C 0.26 -0.04 12.63 180.36 2.28 2.24 16 23 N -0.58 -3.96 11.19 -204.00 -2.28 -6.24 16 24 C 0.19 1.16 13.03 180.76 2.36 3.51 16 25 N -0.35 -2.46 12.46 -61.24 -0.76 -3.23 16 26 C -0.14 0.25 7.43 31.12 0.23 0.48 16 27 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.08 0.09 8.04 -2.39 -0.02 0.07 16 29 H 0.08 0.77 5.86 -2.39 -0.01 0.75 16 30 H 0.16 -0.54 8.06 -2.91 -0.02 -0.56 16 31 H 0.10 -0.97 7.78 -2.39 -0.02 -0.99 16 32 H 0.09 -0.71 8.08 -2.39 -0.02 -0.73 16 33 H 0.08 -0.73 6.21 -2.39 -0.01 -0.75 16 34 H 0.10 -0.56 6.46 -2.39 -0.02 -0.57 16 35 H 0.38 -2.43 7.74 -74.05 -0.57 -3.01 16 36 H -0.28 -1.38 7.11 99.48 0.71 -0.67 16 37 H -0.28 -1.48 6.81 99.48 0.68 -0.80 16 38 H 0.12 0.61 3.32 -2.91 -0.01 0.60 16 39 H 0.40 1.09 6.78 -92.71 -0.63 0.47 16 40 H 0.13 -1.54 8.10 -2.38 -0.02 -1.56 16 41 H 0.08 -0.41 8.14 -2.39 -0.02 -0.43 16 42 H 0.14 -2.05 7.79 -2.39 -0.02 -2.07 16 43 H 0.10 -0.81 8.14 -2.38 -0.02 -0.83 16 44 H 0.26 -2.68 8.06 -2.91 -0.02 -2.70 16 45 H 0.23 0.07 8.06 -2.91 -0.02 0.05 16 46 H 0.04 0.19 8.14 -2.39 -0.02 0.17 16 47 H 0.12 -0.78 7.90 -2.38 -0.02 -0.80 16 Total: 0.00 -25.82 381.32 1.13 -24.70 By element: Atomic # 1 Polarization: -13.35 SS G_CDS: -0.17 Total: -13.52 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 7.80 Total: 12.49 kcal Atomic # 7 Polarization: -9.81 SS G_CDS: -6.65 Total: -16.46 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: -1.94 Total: -9.57 kcal Atomic # 14 Polarization: 0.28 SS G_CDS: 2.09 Total: 2.37 kcal Total: -25.82 1.13 -24.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_9599494.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.366 kcal (2) G-P(sol) polarization free energy of solvation -25.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds