Wall clock time and date at job start Sun Mar 7 2021 04:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86300 * 109.46913 * 2 1 4 4 C 1.50700 * 109.47227 * 240.00242 * 2 1 3 5 5 C 1.34232 * 126.50078 * 105.35649 * 4 2 1 6 6 N 1.36834 * 109.93863 * 180.13639 * 5 4 2 7 7 C 1.46497 * 125.06490 * 179.81529 * 6 5 4 8 8 C 1.50696 * 109.47413 * 264.69313 * 7 6 5 9 9 O 1.21280 * 119.99658 * 0.02562 * 8 7 6 10 10 N 1.34772 * 120.00417 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00149 * 179.97438 * 10 8 7 12 12 H 1.08996 * 112.90649 * 23.75701 * 11 10 8 13 13 C 1.53777 * 113.61088 * 155.00452 * 11 10 8 14 14 C 1.53781 * 87.08336 * 89.11940 * 13 11 10 15 15 H 1.09002 * 113.61228 * 270.88201 * 14 13 11 16 16 C 1.53000 * 113.61707 * 140.06298 * 14 13 11 17 17 N 1.46499 * 109.46974 * 176.53042 * 16 14 13 18 18 C 1.34437 * 126.82151 * 124.71157 * 17 16 14 19 19 N 1.30830 * 108.07680 * 179.88933 * 18 17 16 20 20 C 1.33248 * 109.82751 * 0.38371 * 19 18 17 21 21 N 1.30714 * 108.94618 * 359.76014 * 20 19 18 22 22 C 1.53775 * 113.61823 * 252.50051 * 11 10 8 23 23 C 1.37695 * 109.87101 * 359.54518 * 6 5 4 24 24 C 1.39082 * 133.51072 * 180.28674 * 23 6 5 25 25 C 1.37795 * 119.77548 * 179.97438 * 24 23 6 26 26 C 1.38783 * 120.66858 * 0.02562 * 25 24 23 27 27 C 1.36662 * 120.52543 * 359.97438 * 26 25 24 28 28 C 1.39596 * 119.76744 * 359.95986 * 27 26 25 29 29 H 0.96705 * 114.00518 * 300.00119 * 1 2 3 30 30 H 1.09000 * 109.46667 * 119.99931 * 2 1 3 31 31 H 1.48501 * 109.99729 * 178.67779 * 3 2 1 32 32 H 1.48500 * 110.00332 * 300.00253 * 3 2 1 33 33 H 1.08001 * 125.03142 * 359.96523 * 5 4 2 34 34 H 1.09003 * 109.47171 * 144.69385 * 7 6 5 35 35 H 1.08999 * 109.46964 * 24.69370 * 7 6 5 36 36 H 0.96999 * 120.00148 * 0.02562 * 10 8 7 37 37 H 1.08997 * 113.61941 * 334.56647 * 13 11 10 38 38 H 1.09009 * 113.68972 * 203.67727 * 13 11 10 39 39 H 1.09001 * 109.47043 * 296.52693 * 16 14 13 40 40 H 1.08992 * 109.47277 * 56.52863 * 16 14 13 41 41 H 1.08003 * 125.96096 * 0.03840 * 18 17 16 42 42 H 1.08000 * 125.52593 * 179.79846 * 20 19 18 43 43 H 1.08993 * 113.61636 * 156.33149 * 22 11 10 44 44 H 1.09008 * 113.61006 * 25.43391 * 22 11 10 45 45 H 1.07999 * 120.11487 * 359.95035 * 24 23 6 46 46 H 1.07996 * 119.66266 * 179.97438 * 25 24 23 47 47 H 1.07997 * 119.74054 * 179.97438 * 26 25 24 48 48 H 1.08000 * 120.11675 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 2.4669 -0.1380 -2.3202 6 7 2.8040 -1.0990 -3.2341 7 6 3.4095 -0.8404 -4.5427 8 6 2.3306 -0.7838 -5.5932 9 8 1.1700 -0.9433 -5.2796 10 7 2.6552 -0.5550 -6.8811 11 6 1.6063 -0.5006 -7.9024 12 1 0.6284 -0.2473 -7.4931 13 6 1.9915 0.3311 -9.1372 14 6 2.5748 -0.9628 -9.7293 15 1 3.6200 -1.1296 -9.4688 16 6 2.3013 -1.1300 -11.2253 17 7 2.9638 -2.3434 -11.7101 18 6 2.3880 -3.3727 -12.3553 19 7 3.3160 -4.2563 -12.6195 20 6 4.4899 -3.8321 -12.1533 21 7 4.3254 -2.6651 -11.5879 22 6 1.5868 -1.7259 -8.8314 23 6 2.4947 -2.3457 -2.7380 24 6 2.6303 -3.6361 -3.2387 25 6 2.2164 -4.7107 -2.4819 26 6 1.6640 -4.5193 -1.2232 27 6 1.5215 -3.2600 -0.7119 28 6 1.9354 -2.1570 -1.4608 29 1 -0.3934 0.4417 0.7650 30 1 1.7922 -0.5138 0.8900 31 1 3.5345 1.7703 0.0322 32 1 1.5614 2.4680 -1.2084 33 1 2.6082 0.9240 -2.4566 34 1 4.1096 -1.6404 -4.7836 35 1 3.9405 0.1111 -4.5157 36 1 3.5834 -0.4271 -7.1320 37 1 2.7418 1.0948 -8.9326 38 1 1.1348 0.7168 -9.6901 39 1 1.2271 -1.2115 -11.3914 40 1 2.6877 -0.2650 -11.7642 41 1 1.3424 -3.4547 -12.6129 42 1 5.4257 -4.3657 -12.2306 43 1 0.6187 -1.9034 -9.2996 44 1 2.0105 -2.6230 -8.3797 45 1 3.0582 -3.7954 -4.2174 46 1 2.3221 -5.7120 -2.8727 47 1 1.3443 -5.3723 -0.6431 48 1 1.0912 -3.1186 0.2685 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_9818708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:43:48 Heat of formation + Delta-G solvation = 131.787095 kcal Electronic energy + Delta-G solvation = -32290.704749 eV Core-core repulsion = 27930.317451 eV Total energy + Delta-G solvation = -4360.387298 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.01751 -42.68600 -41.35554 -39.66992 -38.13579 -37.62244 -35.52352 -34.44562 -33.86173 -32.18858 -31.56660 -30.40738 -29.58962 -28.63846 -26.82283 -25.90962 -24.62372 -23.87208 -23.03446 -22.89180 -22.41672 -21.92469 -20.66313 -20.30511 -18.85305 -18.35105 -18.26479 -18.21583 -17.81726 -17.14603 -16.79584 -16.56070 -16.44497 -16.09213 -15.96646 -15.65495 -15.41759 -15.25715 -15.07272 -14.94397 -14.88644 -14.81715 -14.52764 -14.21059 -13.93181 -13.66021 -13.62245 -13.44025 -13.30083 -12.83781 -12.78940 -12.68779 -12.54330 -12.21896 -12.06448 -11.84468 -11.83220 -11.50525 -11.32508 -10.99984 -10.81525 -10.68523 -10.55264 -10.26279 -10.18787 -9.29767 -8.77268 -4.96696 0.00465 0.53084 0.66803 1.20212 1.26154 1.32601 1.41676 1.53101 1.69151 1.97243 1.98411 2.01640 2.84086 3.31205 3.37745 3.40414 3.41640 3.46341 3.51130 3.55110 3.62556 3.71398 3.78573 3.88092 3.92568 3.95869 4.12618 4.14240 4.14512 4.19192 4.31833 4.43549 4.47301 4.48209 4.58279 4.58732 4.66792 4.67668 4.72545 4.80526 4.87687 4.94758 5.03615 5.06506 5.28192 5.40651 5.43155 5.43368 5.54996 5.61799 5.62753 5.90842 6.00417 6.11031 6.29110 6.96045 6.98507 7.10531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.571 6.571 2 C -0.052 4.052 3 Si 0.790 3.210 4 C -0.179 4.179 5 C 0.052 3.948 6 N -0.468 5.468 7 C 0.086 3.914 8 C 0.494 3.506 9 O -0.569 6.569 10 N -0.696 5.696 11 C 0.110 3.890 12 H 0.083 0.917 13 C -0.116 4.116 14 C -0.112 4.112 15 H 0.091 0.909 16 C 0.131 3.869 17 N -0.376 5.376 18 C 0.254 3.746 19 N -0.585 5.585 20 C 0.186 3.814 21 N -0.346 5.346 22 C -0.144 4.144 23 C 0.089 3.911 24 C -0.138 4.138 25 C -0.102 4.102 26 C -0.150 4.150 27 C -0.081 4.081 28 C -0.119 4.119 29 H 0.399 0.601 30 H 0.080 0.920 31 H -0.283 1.283 32 H -0.294 1.294 33 H 0.176 0.824 34 H 0.144 0.856 35 H 0.157 0.843 36 H 0.418 0.582 37 H 0.089 0.911 38 H 0.121 0.879 39 H 0.136 0.864 40 H 0.102 0.898 41 H 0.255 0.745 42 H 0.232 0.768 43 H 0.105 0.895 44 H 0.047 0.953 45 H 0.129 0.871 46 H 0.149 0.851 47 H 0.145 0.855 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.598 5.295 -0.619 5.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.380 6.380 2 C -0.161 4.161 3 Si 0.693 3.307 4 C -0.186 4.186 5 C -0.073 4.073 6 N -0.151 5.151 7 C -0.038 4.038 8 C 0.279 3.721 9 O -0.447 6.447 10 N -0.348 5.348 11 C 0.004 3.996 12 H 0.101 0.899 13 C -0.154 4.154 14 C -0.131 4.131 15 H 0.109 0.891 16 C 0.011 3.989 17 N -0.167 5.167 18 C -0.042 4.042 19 N -0.313 5.313 20 C -0.117 4.117 21 N -0.175 5.175 22 C -0.183 4.183 23 C -0.016 4.016 24 C -0.158 4.158 25 C -0.121 4.121 26 C -0.169 4.169 27 C -0.099 4.099 28 C -0.123 4.123 29 H 0.249 0.751 30 H 0.098 0.902 31 H -0.209 1.209 32 H -0.221 1.221 33 H 0.193 0.807 34 H 0.162 0.838 35 H 0.174 0.826 36 H 0.256 0.744 37 H 0.108 0.892 38 H 0.139 0.861 39 H 0.154 0.846 40 H 0.120 0.880 41 H 0.270 0.730 42 H 0.248 0.752 43 H 0.124 0.876 44 H 0.066 0.934 45 H 0.147 0.853 46 H 0.167 0.833 47 H 0.163 0.837 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.966 5.740 -1.475 6.245 hybrid contribution 0.219 -0.684 -0.468 0.857 sum 2.185 5.057 -1.944 5.842 Atomic orbital electron populations 1.86512 1.18127 1.82417 1.50935 1.24342 0.85108 1.11129 0.95495 0.94117 0.77397 0.73988 0.85150 1.20056 1.08922 0.91870 0.97772 1.21724 1.01983 0.94292 0.89293 1.43357 1.53665 1.03973 1.14083 1.21953 0.94010 1.08798 0.79062 1.21361 0.90338 0.75933 0.84430 1.90807 1.22213 1.49894 1.81751 1.45514 1.11485 1.72102 1.05745 1.21874 0.91888 0.97947 0.87840 0.89897 1.23289 1.02773 0.95635 0.93745 1.22805 0.99970 0.97576 0.92754 0.89096 1.22244 0.98754 0.83555 0.94385 1.50740 1.05435 1.17933 1.42555 1.26834 1.01710 0.83434 0.92192 1.70550 1.00397 1.32094 1.28309 1.26452 0.98695 0.91608 0.94949 1.77916 0.95125 1.18175 1.26238 1.23522 1.00643 0.96823 0.97284 1.18477 1.01910 0.86825 0.94377 1.20231 1.05528 0.89032 1.01057 1.21186 0.97642 0.98896 0.94364 1.20983 1.01948 0.97181 0.96810 1.20517 0.98345 0.91254 0.99789 1.19365 1.04173 0.93582 0.95163 0.75088 0.90205 1.20926 1.22096 0.80715 0.83822 0.82564 0.74437 0.89203 0.86078 0.84644 0.88023 0.72957 0.75230 0.87619 0.93418 0.85336 0.83341 0.83708 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -3.36 12.86 -148.98 -1.92 -5.28 16 2 C -0.05 -0.24 3.05 71.24 0.22 -0.02 16 3 Si 0.79 -0.49 30.78 68.60 2.11 1.62 16 4 C -0.18 -2.00 5.61 -18.63 -0.10 -2.10 16 5 C 0.05 0.47 9.89 83.00 0.82 1.29 16 6 N -0.47 -3.58 2.27 -520.01 -1.18 -4.76 16 7 C 0.09 -0.15 6.48 85.63 0.56 0.40 16 8 C 0.49 1.60 7.90 87.66 0.69 2.30 16 9 O -0.57 -8.62 16.02 -3.03 -0.05 -8.67 16 10 N -0.70 2.66 5.26 -440.07 -2.32 0.34 16 11 C 0.11 -0.38 4.32 45.51 0.20 -0.18 16 12 H 0.08 0.18 7.47 -2.39 -0.02 0.16 16 13 C -0.12 1.17 7.39 31.12 0.23 1.40 16 14 C -0.11 0.88 3.74 -10.27 -0.04 0.84 16 15 H 0.09 -0.40 8.03 -2.39 -0.02 -0.42 16 16 C 0.13 -1.19 6.38 86.38 0.55 -0.64 16 17 N -0.38 0.54 3.69 -352.06 -1.30 -0.76 16 18 C 0.25 -0.32 12.63 180.36 2.28 1.95 16 19 N -0.59 -3.26 11.19 -203.99 -2.28 -5.55 16 20 C 0.19 0.81 13.03 180.76 2.36 3.17 16 21 N -0.35 -1.52 12.47 -61.24 -0.76 -2.28 16 22 C -0.14 0.64 7.43 31.12 0.23 0.87 16 23 C 0.09 1.03 6.80 39.03 0.27 1.30 16 24 C -0.14 -1.16 10.00 22.37 0.22 -0.93 16 25 C -0.10 -0.66 10.01 22.30 0.22 -0.44 16 26 C -0.15 -1.08 9.97 22.03 0.22 -0.86 16 27 C -0.08 -0.84 10.05 22.23 0.22 -0.62 16 28 C -0.12 -1.59 6.35 -20.20 -0.13 -1.72 16 29 H 0.40 -2.31 8.74 -74.05 -0.65 -2.96 16 30 H 0.08 0.11 7.96 -2.39 -0.02 0.09 16 31 H -0.28 -1.01 7.11 99.48 0.71 -0.30 16 32 H -0.29 -1.67 7.05 99.48 0.70 -0.97 16 33 H 0.18 0.80 6.30 -2.91 -0.02 0.78 16 34 H 0.14 -1.01 8.14 -2.39 -0.02 -1.03 16 35 H 0.16 -1.45 8.12 -2.39 -0.02 -1.47 16 36 H 0.42 -4.21 8.70 -92.71 -0.81 -5.02 16 37 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H 0.12 -1.61 8.10 -2.38 -0.02 -1.62 16 39 H 0.14 -2.06 7.82 -2.39 -0.02 -2.08 16 40 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 41 H 0.25 -2.76 8.06 -2.91 -0.02 -2.78 16 42 H 0.23 -0.30 8.06 -2.91 -0.02 -0.33 16 43 H 0.11 -0.71 7.92 -2.39 -0.02 -0.73 16 44 H 0.05 0.05 8.14 -2.38 -0.02 0.03 16 45 H 0.13 0.53 8.06 -2.91 -0.02 0.51 16 46 H 0.15 0.14 8.06 -2.91 -0.02 0.11 16 47 H 0.15 0.28 8.06 -2.91 -0.02 0.26 16 48 H 0.13 0.96 8.06 -2.91 -0.02 0.94 16 Total: 0.00 -39.11 409.81 0.90 -38.21 By element: Atomic # 1 Polarization: -18.47 SS G_CDS: -0.42 Total: -18.89 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 9.01 Total: 6.01 kcal Atomic # 7 Polarization: -5.17 SS G_CDS: -7.84 Total: -13.01 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -1.96 Total: -13.94 kcal Atomic # 14 Polarization: -0.49 SS G_CDS: 2.11 Total: 1.62 kcal Total: -39.11 0.90 -38.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_9818708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.999 kcal (2) G-P(sol) polarization free energy of solvation -39.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds