Wall clock time and date at job start Sun Mar 7 2021 04:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36777 * 125.80069 * 2 1 4 4 C 1.47262 * 126.93984 * 359.97438 * 3 2 1 5 5 O 1.21625 * 120.00175 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99920 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00126 * 180.02562 * 6 4 3 8 8 H 1.09002 * 112.84935 * 25.32833 * 7 6 4 9 9 C 1.53786 * 113.61643 * 156.52505 * 7 6 4 10 10 C 1.53782 * 87.07909 * 89.19525 * 9 7 6 11 11 H 1.08997 * 113.61784 * 270.88529 * 10 9 7 12 12 C 1.53002 * 113.61144 * 140.06321 * 10 9 7 13 13 N 1.46501 * 109.47210 * 175.00337 * 12 10 9 14 14 C 1.34430 * 126.82363 * 125.00261 * 13 12 10 15 15 N 1.30829 * 108.07670 * 179.97438 * 14 13 12 16 16 C 1.33246 * 109.82807 * 0.02562 * 15 14 13 17 17 N 1.30703 * 108.94770 * 359.74834 * 16 15 14 18 18 C 1.53781 * 113.61305 * 254.13352 * 7 6 4 19 19 C 1.46691 * 106.11370 * 180.24086 * 3 2 1 20 20 C 1.34486 * 106.33327 * 359.56882 * 19 3 2 21 21 C 1.50696 * 125.57118 * 180.14346 * 20 19 3 22 22 O 1.42898 * 109.47233 * 300.31335 * 21 20 19 23 23 Si 1.86297 * 109.47006 * 180.31035 * 21 20 19 24 24 N 1.34654 * 125.80102 * 179.97438 * 2 1 3 25 25 H 1.08997 * 109.47633 * 90.00148 * 1 2 3 26 26 H 1.08997 * 109.47058 * 210.00075 * 1 2 3 27 27 H 1.09007 * 109.47114 * 329.99688 * 1 2 3 28 28 H 0.97006 * 119.99816 * 359.97438 * 6 4 3 29 29 H 1.08993 * 113.61491 * 203.74894 * 9 7 6 30 30 H 1.09000 * 113.61138 * 334.65232 * 9 7 6 31 31 H 1.09000 * 109.47179 * 295.00397 * 12 10 9 32 32 H 1.09004 * 109.47260 * 55.00380 * 12 10 9 33 33 H 1.08000 * 125.96193 * 359.92421 * 14 13 12 34 34 H 1.08006 * 125.52472 * 180.02562 * 16 15 14 35 35 H 1.09001 * 113.61695 * 25.34675 * 18 7 6 36 36 H 1.08997 * 113.61223 * 156.25258 * 18 7 6 37 37 H 1.07996 * 126.82643 * 179.73638 * 19 3 2 38 38 H 1.09000 * 109.47001 * 60.31448 * 21 20 19 39 39 H 0.96703 * 114.00053 * 299.99436 * 22 21 20 40 40 H 1.48506 * 110.00169 * 180.02562 * 23 21 20 41 41 H 1.48500 * 110.00462 * 301.31882 * 23 21 20 42 42 H 0.97001 * 124.85334 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8701 2.5157 -0.0005 5 8 0.6838 2.7839 -0.0015 6 7 2.7848 3.5055 -0.0010 7 6 2.3502 4.9045 -0.0009 8 1 1.3578 5.0394 0.4292 9 6 3.4019 5.8763 0.5599 10 6 3.9454 5.9916 -0.8741 11 1 4.7054 5.2481 -1.1141 12 6 4.3618 7.4126 -1.2592 13 7 4.9730 7.3985 -2.5906 14 6 4.6049 8.1340 -3.6539 15 7 5.3972 7.8321 -4.6503 16 6 6.2794 6.9116 -4.2632 17 7 6.0631 6.6176 -3.0082 18 6 2.5349 5.6069 -1.3564 19 6 3.6882 0.6152 -0.0059 20 6 3.6096 -0.7274 0.0008 21 6 4.7820 -1.6742 0.0012 22 8 5.5758 -1.4500 -1.1656 23 14 4.1615 -3.4308 0.0022 24 7 2.2947 -1.0921 0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 3.7310 3.2915 -0.0006 29 1 2.9784 6.8049 0.9423 30 1 4.1001 5.4103 1.2552 31 1 3.4838 8.0584 -1.2693 32 1 5.0819 7.7897 -0.5329 33 1 3.7957 8.8488 -3.6812 34 1 7.0512 6.4816 -4.8845 35 1 2.5341 4.9239 -2.2059 36 1 1.8738 6.4618 -1.4988 37 1 4.5889 1.2110 -0.0115 38 1 5.3875 -1.5022 0.8911 39 1 5.1003 -1.5852 -1.9968 40 1 5.3082 -4.3745 0.0033 41 1 3.3085 -3.6676 1.1945 42 1 1.9733 -2.0074 0.0013 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688106_9865296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:43:53 Heat of formation + Delta-G solvation = 97.653561 kcal Electronic energy + Delta-G solvation = -26049.875186 eV Core-core repulsion = 22228.223787 eV Total energy + Delta-G solvation = -3821.651398 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.96641 -42.52976 -41.01634 -39.22758 -37.75827 -35.37373 -33.93098 -32.82793 -32.15332 -32.01432 -29.17936 -28.81385 -26.72280 -25.87644 -24.62608 -23.42382 -22.89018 -22.33109 -21.59126 -20.77349 -20.08707 -18.71443 -18.31594 -17.78284 -17.06399 -16.99958 -16.74300 -16.55070 -15.93742 -15.91081 -15.73795 -15.35491 -15.11081 -15.02859 -14.76999 -14.54780 -14.51116 -14.09838 -13.94192 -13.70325 -13.43884 -13.38021 -13.24633 -12.73675 -12.70893 -12.58166 -12.26911 -12.11418 -11.71898 -11.40205 -11.01030 -10.95134 -10.76807 -10.52881 -10.48435 -10.14735 -9.84719 -9.19160 -5.15915 0.65289 0.72377 1.09706 1.23119 1.47164 1.47913 1.81420 1.99560 2.03011 2.35682 2.47023 3.39691 3.40910 3.49359 3.51428 3.55733 3.67970 3.82230 3.84608 3.96783 4.05225 4.17587 4.19632 4.21551 4.41630 4.46817 4.51700 4.55054 4.69315 4.70717 4.73159 4.76209 4.85297 4.97437 5.01498 5.05416 5.16962 5.27122 5.33073 5.48126 5.61987 5.65757 5.81876 5.96907 6.38803 6.58598 6.67880 7.15187 7.29492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.121 3.879 3 C -0.268 4.268 4 C 0.589 3.411 5 O -0.583 6.583 6 N -0.703 5.703 7 C 0.113 3.887 8 H 0.091 0.909 9 C -0.119 4.119 10 C -0.114 4.114 11 H 0.082 0.918 12 C 0.132 3.868 13 N -0.376 5.376 14 C 0.255 3.745 15 N -0.586 5.586 16 C 0.185 3.815 17 N -0.348 5.348 18 C -0.143 4.143 19 C -0.140 4.140 20 C -0.022 4.022 21 C -0.041 4.041 22 O -0.549 6.549 23 Si 0.767 3.233 24 N -0.533 5.533 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.407 0.593 29 H 0.125 0.875 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.100 0.900 33 H 0.257 0.743 34 H 0.231 0.769 35 H 0.044 0.956 36 H 0.111 0.889 37 H 0.151 0.849 38 H 0.122 0.878 39 H 0.396 0.604 40 H -0.290 1.290 41 H -0.274 1.274 42 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.080 -1.005 1.503 2.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.001 3.999 3 C -0.278 4.278 4 C 0.380 3.620 5 O -0.465 6.465 6 N -0.353 5.353 7 C 0.008 3.992 8 H 0.109 0.891 9 C -0.157 4.157 10 C -0.134 4.134 11 H 0.100 0.900 12 C 0.012 3.988 13 N -0.167 5.167 14 C -0.041 4.041 15 N -0.314 5.314 16 C -0.117 4.117 17 N -0.177 5.177 18 C -0.181 4.181 19 C -0.165 4.165 20 C -0.131 4.131 21 C -0.152 4.152 22 O -0.356 6.356 23 Si 0.671 3.329 24 N -0.134 5.134 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.100 0.900 28 H 0.243 0.757 29 H 0.143 0.857 30 H 0.100 0.900 31 H 0.157 0.843 32 H 0.118 0.882 33 H 0.273 0.727 34 H 0.247 0.753 35 H 0.063 0.937 36 H 0.129 0.871 37 H 0.169 0.831 38 H 0.139 0.861 39 H 0.246 0.754 40 H -0.217 1.217 41 H -0.201 1.201 42 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -2.092 -1.964 2.539 3.831 hybrid contribution 0.657 0.007 0.256 0.706 sum -1.434 -1.957 2.796 3.702 Atomic orbital electron populations 1.20624 0.85867 1.04609 1.04253 1.20582 0.94366 0.85507 0.99458 1.20200 0.94099 0.91836 1.21632 1.17594 0.85007 0.84922 0.74493 1.90719 1.17905 1.84941 1.52940 1.45417 1.09823 1.05133 1.74967 1.21858 0.99574 0.80237 0.97558 0.89083 1.23302 0.97064 1.00308 0.95030 1.22816 0.96707 0.96270 0.97560 0.89951 1.22254 0.99456 0.98530 0.78564 1.50743 1.23326 1.29886 1.12705 1.26856 0.99149 0.96060 0.82019 1.70542 1.09700 1.19265 1.31863 1.26436 0.99217 0.94708 0.91371 1.77936 1.05643 1.18901 1.15225 1.23563 0.96821 1.00982 0.96760 1.21915 0.95333 0.93341 1.05873 1.20689 0.84825 0.95549 1.12015 1.24633 0.91268 1.07463 0.91801 1.86517 1.39775 1.93127 1.16207 0.94259 0.81146 0.72005 0.85524 1.41675 1.05104 1.08812 1.57809 0.89440 0.89099 0.90025 0.75660 0.85660 0.90008 0.84261 0.88208 0.72741 0.75281 0.93715 0.87054 0.83111 0.86115 0.75399 1.21662 1.20065 0.73138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.01 9.88 71.23 0.70 0.71 16 2 C 0.12 0.26 7.17 41.78 0.30 0.56 16 3 C -0.27 -1.44 6.29 -19.04 -0.12 -1.56 16 4 C 0.59 4.82 7.81 86.62 0.68 5.50 16 5 O -0.58 -8.21 14.43 -4.11 -0.06 -8.27 16 6 N -0.70 -1.69 5.26 -443.45 -2.33 -4.03 16 7 C 0.11 -0.06 4.29 45.52 0.20 0.13 16 8 H 0.09 0.25 7.50 -2.39 -0.02 0.23 16 9 C -0.12 0.83 7.38 31.12 0.23 1.06 16 10 C -0.11 0.54 3.76 -10.21 -0.04 0.50 16 11 H 0.08 0.03 8.01 -2.39 -0.02 0.01 16 12 C 0.13 -0.94 6.39 86.38 0.55 -0.39 16 13 N -0.38 -0.14 3.69 -352.05 -1.30 -1.44 16 14 C 0.26 -0.04 12.63 180.36 2.28 2.24 16 15 N -0.59 -3.97 11.19 -204.00 -2.28 -6.25 16 16 C 0.19 1.13 13.03 180.77 2.36 3.48 16 17 N -0.35 -2.32 12.46 -61.24 -0.76 -3.08 16 18 C -0.14 0.31 7.45 31.18 0.23 0.55 16 19 C -0.14 -0.30 10.43 23.62 0.25 -0.05 16 20 C -0.02 0.02 6.11 40.98 0.25 0.27 16 21 C -0.04 0.13 2.98 71.23 0.21 0.34 16 22 O -0.55 1.00 12.86 -148.98 -1.92 -0.92 16 23 Si 0.77 -4.49 30.94 68.60 2.12 -2.36 16 24 N -0.53 1.45 5.41 -171.07 -0.93 0.52 16 25 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 26 H 0.09 -0.48 8.14 -2.39 -0.02 -0.50 16 27 H 0.08 0.42 6.47 -2.38 -0.02 0.41 16 28 H 0.41 -0.27 7.83 -92.70 -0.73 -0.99 16 29 H 0.13 -1.45 8.10 -2.39 -0.02 -1.47 16 30 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 31 H 0.14 -1.97 7.80 -2.39 -0.02 -1.99 16 32 H 0.10 -0.82 8.14 -2.38 -0.02 -0.83 16 33 H 0.26 -2.63 8.06 -2.91 -0.02 -2.65 16 34 H 0.23 0.08 8.06 -2.91 -0.02 0.06 16 35 H 0.04 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.11 -0.68 7.91 -2.39 -0.02 -0.70 16 37 H 0.15 0.01 7.69 -2.91 -0.02 -0.01 16 38 H 0.12 -0.29 7.96 -2.39 -0.02 -0.31 16 39 H 0.40 -3.65 8.70 -74.06 -0.64 -4.30 16 40 H -0.29 -0.61 7.11 99.48 0.71 0.09 16 41 H -0.27 0.56 7.11 99.48 0.71 1.27 16 42 H 0.43 -3.64 6.70 -92.71 -0.62 -4.26 16 Total: 0.00 -28.71 357.57 -0.26 -28.96 By element: Atomic # 1 Polarization: -15.61 SS G_CDS: -0.87 Total: -16.48 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 8.07 Total: 13.35 kcal Atomic # 7 Polarization: -6.67 SS G_CDS: -7.60 Total: -14.28 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -1.98 Total: -9.19 kcal Atomic # 14 Polarization: -4.49 SS G_CDS: 2.12 Total: -2.36 kcal Total: -28.71 -0.26 -28.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688106_9865296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.616 kcal (2) G-P(sol) polarization free energy of solvation -28.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds