Wall clock time and date at job start Sun Mar 7 2021 04:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42897 * 109.47174 * 2 1 4 4 C 1.35895 * 117.00036 * 84.91844 * 3 2 1 5 5 C 1.38738 * 120.05804 * 174.25659 * 4 3 2 6 6 C 1.38140 * 119.94543 * 179.70113 * 5 4 3 7 7 C 1.38270 * 120.05347 * 0.59337 * 6 5 4 8 8 C 1.50704 * 119.94074 * 179.70478 * 7 6 5 9 9 O 1.42904 * 109.46983 * 244.97491 * 8 7 6 10 10 Si 1.86295 * 109.47470 * 4.97380 * 8 7 6 11 11 C 1.38264 * 120.11376 * 359.67652 * 7 6 5 12 12 C 1.38144 * 120.05582 * 0.02940 * 11 7 6 13 13 C 1.50695 * 109.47020 * 239.99813 * 2 1 3 14 14 O 1.21285 * 119.99937 * 114.99883 * 13 2 1 15 15 N 1.34782 * 120.00402 * 295.00429 * 13 2 1 16 16 C 1.46497 * 120.00344 * 179.72568 * 15 13 2 17 17 H 1.09004 * 112.84780 * 336.47207 * 16 15 13 18 18 C 1.53780 * 113.61574 * 107.77215 * 16 15 13 19 19 C 1.53783 * 87.07767 * 89.11632 * 18 16 15 20 20 H 1.08990 * 113.61616 * 270.88134 * 19 18 16 21 21 C 1.53000 * 113.68822 * 139.99012 * 19 18 16 22 22 N 1.46501 * 109.47292 * 87.46573 * 21 19 18 23 23 C 1.36886 * 126.39972 * 89.99520 * 22 21 19 24 24 C 1.34668 * 106.81908 * 180.02562 * 23 22 21 25 25 N 1.34127 * 108.01983 * 0.02562 * 24 23 22 26 26 C 1.30505 * 109.25854 * 359.72419 * 25 24 23 27 27 C 1.53774 * 113.61353 * 205.27195 * 16 15 13 28 28 H 1.09001 * 109.47328 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47214 * 300.00228 * 1 2 3 30 30 H 1.08998 * 109.47391 * 60.00152 * 1 2 3 31 31 H 1.09003 * 109.46939 * 120.00410 * 2 1 3 32 32 H 1.08003 * 120.02395 * 359.97438 * 5 4 3 33 33 H 1.08002 * 119.97217 * 180.27347 * 6 5 4 34 34 H 1.09001 * 109.47361 * 124.97859 * 8 7 6 35 35 H 0.96697 * 113.99794 * 59.99596 * 9 8 7 36 36 H 1.48499 * 110.00215 * 180.02562 * 10 8 7 37 37 H 1.48497 * 109.99973 * 301.32297 * 10 8 7 38 38 H 1.07995 * 119.97292 * 179.97438 * 11 7 6 39 39 H 1.07997 * 120.03231 * 180.02562 * 12 11 7 40 40 H 0.97001 * 119.99661 * 359.97438 * 15 13 2 41 41 H 1.09003 * 113.61208 * 203.66479 * 18 16 15 42 42 H 1.09000 * 113.61683 * 334.57015 * 18 16 15 43 43 H 1.09001 * 109.47625 * 207.46584 * 21 19 18 44 44 H 1.09002 * 109.47755 * 327.46689 * 21 19 18 45 45 H 1.07994 * 126.58680 * 359.97091 * 23 22 21 46 46 H 1.07996 * 125.98689 * 180.02562 * 24 23 22 47 47 H 1.08001 * 125.65204 * 180.29099 * 26 25 24 48 48 H 1.09002 * 113.61854 * 25.43514 * 27 16 15 49 49 H 1.09009 * 113.61077 * 156.24661 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.1108 1.9647 1.2061 5 6 2.6773 3.2281 1.2932 6 6 2.7768 3.8562 2.5195 7 6 2.3235 3.2216 3.6613 8 6 2.4394 3.9064 4.9988 9 8 3.3377 3.1725 5.8334 10 14 3.0890 5.6356 4.7570 11 6 1.7637 1.9601 3.5780 12 6 1.6564 1.3303 2.3532 13 6 2.0322 -0.7104 -1.2304 14 8 2.6529 -0.0979 -2.0734 15 7 1.7917 -2.0265 -1.3942 16 6 2.2748 -2.7158 -2.5932 17 1 2.4360 -2.0406 -3.4336 18 6 3.4571 -3.6621 -2.3255 19 6 2.4149 -4.7588 -2.0500 20 1 2.0938 -4.8045 -1.0095 21 6 2.7998 -6.1281 -2.6137 22 7 3.6121 -6.8499 -1.6312 23 6 3.1489 -7.6860 -0.6513 24 6 4.2266 -8.1322 0.0218 25 7 5.3181 -7.5831 -0.5316 26 6 4.9581 -6.8182 -1.5258 27 6 1.4575 -3.9668 -2.9559 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 3.0361 3.7220 0.4022 33 1 3.2136 4.8416 2.5872 34 1 1.4580 3.9496 5.4711 35 1 4.2322 3.0936 5.4747 36 1 3.2084 6.3214 6.0687 37 1 4.4125 5.5916 4.0850 38 1 1.4108 1.4664 4.4713 39 1 1.2187 0.3451 2.2885 40 1 1.2956 -2.5164 -0.7198 41 1 4.0707 -3.8540 -3.2057 42 1 4.0454 -3.3889 -1.4495 43 1 1.8968 -6.6996 -2.8286 44 1 3.3727 -5.9954 -3.5314 45 1 2.1174 -7.9385 -0.4551 46 1 4.2142 -8.8128 0.8602 47 1 5.6258 -6.2518 -2.1581 48 1 0.4314 -3.9396 -2.5890 49 1 1.5232 -4.2411 -4.0089 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14688108_10157680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:43:57 Heat of formation + Delta-G solvation = 25.313148 kcal Electronic energy + Delta-G solvation = -30908.510728 eV Core-core repulsion = 26612.128284 eV Total energy + Delta-G solvation = -4296.382444 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.94560 -41.91264 -41.06226 -39.80544 -38.90274 -37.29034 -35.48467 -34.29917 -32.89266 -32.07082 -31.40264 -30.37658 -28.82004 -26.78668 -26.70364 -25.67688 -24.40501 -23.85917 -22.59186 -22.24192 -21.82202 -21.55416 -20.38943 -19.49650 -18.76521 -18.35991 -18.19160 -17.39686 -16.90205 -16.69156 -16.50686 -16.34253 -16.20395 -15.85492 -15.65990 -15.45883 -15.30932 -15.01193 -14.89545 -14.79226 -14.61354 -14.36377 -14.28261 -14.22073 -13.77686 -13.58762 -13.43631 -13.37980 -13.30064 -12.95661 -12.81424 -12.35827 -12.25168 -12.17736 -12.09734 -11.74492 -11.60103 -11.36621 -10.99974 -10.89777 -10.60088 -10.48471 -10.20014 -10.06766 -9.43670 -9.26368 -4.92875 0.21643 0.30012 1.16548 1.31634 1.32881 1.43399 1.58773 1.93711 1.94644 2.23823 2.43481 2.61626 3.36765 3.38999 3.43706 3.46741 3.60667 3.69317 3.70822 3.74312 3.82420 3.83474 3.89143 3.89643 4.08803 4.13018 4.23903 4.26189 4.32646 4.50289 4.52664 4.57198 4.61159 4.61887 4.67131 4.68694 4.75388 4.79409 4.81459 4.96644 4.96784 4.99769 5.06571 5.12181 5.16417 5.26078 5.36175 5.45682 5.49809 5.65350 5.84432 6.20977 6.32340 6.38359 6.47684 7.02541 7.17562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.064 3.936 3 O -0.312 6.312 4 C 0.120 3.880 5 C -0.160 4.160 6 C -0.078 4.078 7 C -0.157 4.157 8 C -0.073 4.073 9 O -0.549 6.549 10 Si 0.759 3.241 11 C -0.056 4.056 12 C -0.208 4.208 13 C 0.519 3.481 14 O -0.567 6.567 15 N -0.692 5.692 16 C 0.109 3.891 17 H 0.085 0.915 18 C -0.149 4.149 19 C -0.115 4.115 20 H 0.096 0.904 21 C 0.109 3.891 22 N -0.451 5.451 23 C -0.045 4.045 24 C -0.068 4.068 25 N -0.548 5.548 26 C 0.173 3.827 27 C -0.115 4.115 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.146 0.854 34 H 0.128 0.872 35 H 0.385 0.615 36 H -0.303 1.303 37 H -0.286 1.286 38 H 0.140 0.860 39 H 0.154 0.846 40 H 0.418 0.582 41 H 0.103 0.897 42 H 0.052 0.948 43 H 0.116 0.884 44 H 0.111 0.889 45 H 0.203 0.797 46 H 0.171 0.829 47 H 0.219 0.781 48 H 0.094 0.906 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.868 -2.450 -2.096 9.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 O -0.225 6.225 4 C 0.075 3.925 5 C -0.178 4.178 6 C -0.095 4.095 7 C -0.158 4.158 8 C -0.183 4.183 9 O -0.357 6.357 10 Si 0.665 3.335 11 C -0.074 4.074 12 C -0.226 4.226 13 C 0.304 3.696 14 O -0.445 6.445 15 N -0.346 5.346 16 C 0.003 3.997 17 H 0.103 0.897 18 C -0.188 4.188 19 C -0.134 4.134 20 H 0.114 0.886 21 C -0.012 4.012 22 N -0.133 5.133 23 C -0.179 4.179 24 C -0.215 4.215 25 N -0.267 5.267 26 C -0.110 4.110 27 C -0.154 4.154 28 H 0.128 0.872 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.139 0.861 32 H 0.152 0.848 33 H 0.164 0.836 34 H 0.146 0.854 35 H 0.234 0.766 36 H -0.232 1.232 37 H -0.213 1.213 38 H 0.158 0.842 39 H 0.171 0.829 40 H 0.256 0.744 41 H 0.122 0.878 42 H 0.071 0.929 43 H 0.134 0.866 44 H 0.129 0.871 45 H 0.220 0.780 46 H 0.188 0.812 47 H 0.236 0.764 48 H 0.113 0.887 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.569 -1.480 -2.209 8.023 hybrid contribution 0.321 -0.879 0.434 1.032 sum -7.248 -2.359 -1.776 7.827 Atomic orbital electron populations 1.22358 0.90212 1.05730 1.04525 1.22407 0.97392 0.82199 0.97569 1.86185 1.81486 1.26913 1.27929 1.19268 0.95806 0.93196 0.84244 1.20584 1.03853 0.94154 0.99246 1.21012 0.97771 0.99631 0.91129 1.20261 1.03397 0.96802 0.95309 1.25078 0.98636 1.04898 0.89644 1.86567 1.25197 1.75391 1.48512 0.94130 0.83417 0.75966 0.79951 1.21010 0.95319 0.93706 0.97364 1.21523 1.06623 1.02565 0.91927 1.20523 0.78915 0.82758 0.87364 1.90753 1.41368 1.67060 1.45294 1.45402 1.57358 1.07849 1.23941 1.21921 0.96352 0.93661 0.87723 0.89690 1.23568 0.96764 0.95903 1.02557 1.22927 0.97354 0.92341 1.00760 0.88574 1.22242 0.96659 0.91978 0.90291 1.45756 1.07394 1.34458 1.25670 1.23161 1.01538 0.99151 0.94052 1.22640 0.88684 1.05909 1.04295 1.70242 1.32453 1.13318 1.10671 1.25355 0.83563 1.02438 0.99643 1.23276 0.98858 0.91456 1.01782 0.87236 0.89532 0.91923 0.86149 0.84775 0.83634 0.85443 0.76586 1.23157 1.21275 0.84173 0.82889 0.74430 0.87814 0.92890 0.86633 0.87067 0.78003 0.81172 0.76418 0.88737 0.86459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.18 9.12 71.98 0.66 1.83 16 2 C 0.06 -0.09 2.63 29.84 0.08 -0.01 16 3 O -0.31 -1.97 9.34 -73.38 -0.69 -2.65 16 4 C 0.12 0.45 6.60 22.51 0.15 0.59 16 5 C -0.16 -0.56 9.99 22.37 0.22 -0.34 16 6 C -0.08 -0.04 8.66 22.25 0.19 0.15 16 7 C -0.16 0.01 5.35 -19.85 -0.11 -0.10 16 8 C -0.07 0.07 2.80 71.24 0.20 0.27 16 9 O -0.55 -1.26 12.83 -148.98 -1.91 -3.17 16 10 Si 0.76 -1.07 29.88 68.60 2.05 0.98 16 11 C -0.06 0.03 9.68 22.25 0.22 0.25 16 12 C -0.21 0.16 8.24 22.37 0.18 0.35 16 13 C 0.52 1.38 7.18 87.65 0.63 2.01 16 14 O -0.57 -7.86 16.11 15.95 0.26 -7.60 16 15 N -0.69 3.81 5.22 -440.05 -2.30 1.52 16 16 C 0.11 -0.61 4.33 45.52 0.20 -0.41 16 17 H 0.08 -0.01 7.46 -2.38 -0.02 -0.03 16 18 C -0.15 0.98 7.43 31.12 0.23 1.21 16 19 C -0.11 1.30 3.84 -10.27 -0.04 1.26 16 20 H 0.10 -1.00 8.14 -2.39 -0.02 -1.02 16 21 C 0.11 -1.23 5.99 86.38 0.52 -0.71 16 22 N -0.45 1.53 2.75 -529.06 -1.46 0.07 16 23 C -0.05 0.07 11.58 83.09 0.96 1.04 16 24 C -0.07 -0.35 11.87 83.52 0.99 0.64 16 25 N -0.55 -5.22 11.25 -200.31 -2.25 -7.47 16 26 C 0.17 0.37 12.56 180.26 2.26 2.64 16 27 C -0.12 1.48 7.39 31.12 0.23 1.71 16 28 H 0.11 -1.46 7.92 -2.39 -0.02 -1.48 16 29 H 0.09 -0.66 6.90 -2.39 -0.02 -0.68 16 30 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.12 -0.77 6.32 -2.39 -0.02 -0.79 16 32 H 0.13 0.41 8.06 -2.91 -0.02 0.39 16 33 H 0.15 -0.43 4.83 -2.91 -0.01 -0.44 16 34 H 0.13 -0.40 7.96 -2.39 -0.02 -0.42 16 35 H 0.39 -1.02 8.70 -74.06 -0.64 -1.67 16 36 H -0.30 -1.92 7.11 99.48 0.71 -1.22 16 37 H -0.29 -0.80 7.01 99.48 0.70 -0.10 16 38 H 0.14 -0.42 8.06 -2.91 -0.02 -0.44 16 39 H 0.15 -0.97 5.43 -2.91 -0.02 -0.99 16 40 H 0.42 -5.14 8.48 -92.71 -0.79 -5.93 16 41 H 0.10 -0.84 7.90 -2.39 -0.02 -0.85 16 42 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 43 H 0.12 -1.68 8.14 -2.39 -0.02 -1.70 16 44 H 0.11 -1.49 7.85 -2.39 -0.02 -1.51 16 45 H 0.20 -1.76 8.06 -2.91 -0.02 -1.79 16 46 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 47 H 0.22 -0.76 8.06 -2.91 -0.02 -0.78 16 48 H 0.09 -1.38 8.14 -2.39 -0.02 -1.40 16 49 H 0.12 -1.75 8.10 -2.38 -0.02 -1.77 16 Total: 0.00 -31.55 405.60 1.06 -30.48 By element: Atomic # 1 Polarization: -24.12 SS G_CDS: -0.42 Total: -24.53 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 7.78 Total: 12.37 kcal Atomic # 7 Polarization: 0.12 SS G_CDS: -6.01 Total: -5.88 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -2.34 Total: -13.42 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: 2.05 Total: 0.98 kcal Total: -31.55 1.06 -30.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_10157680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.798 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds