Wall clock time and date at job start Sun Mar 7 2021 04:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.35447 * 126.06876 * 119.69627 * 4 2 1 6 6 N 1.35535 * 108.87411 * 179.89063 * 5 4 2 7 7 C 1.37652 * 108.64166 * 0.37051 * 6 5 4 8 8 C 1.46672 * 126.23181 * 179.77562 * 7 6 5 9 9 O 1.21698 * 119.99986 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99891 * 359.97438 * 8 7 6 11 11 C 1.46508 * 119.99906 * 179.97438 * 10 8 7 12 12 H 1.08996 * 112.85083 * 334.67477 * 11 10 8 13 13 C 1.53783 * 113.61148 * 105.86762 * 11 10 8 14 14 C 1.54044 * 86.98619 * 89.16036 * 13 11 10 15 15 H 1.09002 * 113.61326 * 270.88136 * 14 13 11 16 16 C 1.53007 * 113.69310 * 139.98757 * 14 13 11 17 17 N 1.46503 * 109.47082 * 87.46788 * 16 14 13 18 18 C 1.36882 * 126.39819 * 89.99529 * 17 16 14 19 19 C 1.34663 * 106.81945 * 180.02562 * 18 17 16 20 20 N 1.34125 * 108.01953 * 0.02562 * 19 18 17 21 21 C 1.30498 * 109.25891 * 359.72277 * 20 19 18 22 22 C 1.53776 * 113.61313 * 203.47049 * 11 10 8 23 23 C 1.37870 * 107.53594 * 359.77464 * 7 6 5 24 24 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 25 25 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 26 26 H 1.48501 * 109.99918 * 178.67685 * 3 2 1 27 27 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 28 28 H 1.08001 * 125.55902 * 0.02914 * 5 4 2 29 29 H 0.96997 * 125.67996 * 180.18408 * 6 5 4 30 30 H 0.97000 * 120.00409 * 0.02562 * 10 8 7 31 31 H 1.09003 * 113.61053 * 203.67133 * 13 11 10 32 32 H 1.09003 * 113.61291 * 334.56048 * 13 11 10 33 33 H 1.08996 * 109.46712 * 207.46630 * 16 14 13 34 34 H 1.08998 * 109.47007 * 327.46573 * 16 14 13 35 35 H 1.08004 * 126.58799 * 359.97095 * 18 17 16 36 36 H 1.08003 * 125.98874 * 179.97438 * 19 18 17 37 37 H 1.07998 * 125.65356 * 180.28880 * 21 20 19 38 38 H 1.09000 * 113.61902 * 25.44099 * 22 11 10 39 39 H 1.09007 * 113.61151 * 156.25146 * 22 11 10 40 40 H 1.07998 * 126.46198 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7086 -0.1724 -2.2005 6 7 2.9550 -1.1180 -3.1397 7 6 2.3183 -2.2813 -2.7705 8 6 2.3252 -3.5464 -3.5126 9 8 1.7197 -4.5092 -3.0796 10 7 3.0013 -3.6424 -4.6746 11 6 3.0086 -4.9063 -5.4156 12 1 2.8386 -5.7726 -4.7764 13 6 2.1261 -4.8871 -6.6748 14 6 3.3632 -4.3727 -7.4351 15 1 3.4547 -3.2865 -7.4359 16 6 3.5268 -4.9838 -8.8282 17 7 2.7732 -4.1895 -9.8015 18 6 3.2423 -3.1186 -10.5134 19 6 2.2261 -2.6885 -11.2853 20 7 1.1653 -3.4749 -11.0508 21 6 1.4872 -4.3797 -10.1672 22 6 4.2152 -5.0618 -6.3562 23 6 1.6729 -2.0406 -1.5762 24 1 -0.3934 0.4418 0.7650 25 1 1.7923 -0.5138 0.8901 26 1 3.5346 1.7702 0.0322 27 1 1.5616 2.4678 -1.2086 28 1 3.0742 0.8436 -2.2210 29 1 3.4888 -0.9948 -3.9402 30 1 3.4836 -2.8749 -5.0200 31 1 1.7982 -5.8767 -6.9932 32 1 1.3107 -4.1655 -6.6256 33 1 4.5820 -4.9877 -9.1015 34 1 3.1490 -6.0062 -8.8231 35 1 4.2362 -2.6987 -10.4647 36 1 2.2593 -1.8557 -11.9722 37 1 0.8329 -5.1513 -9.7892 38 1 5.0853 -4.4812 -6.0500 39 1 4.4583 -6.0992 -6.5865 40 1 1.0793 -2.7461 -1.0139 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14688108_10543058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:44:02 Heat of formation + Delta-G solvation = 78.828055 kcal Electronic energy + Delta-G solvation = -23761.750638 eV Core-core repulsion = 20160.246435 eV Total energy + Delta-G solvation = -3601.504204 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.99958 -42.56353 -41.15846 -39.31124 -37.60897 -35.51703 -34.07880 -32.65752 -30.86063 -30.38637 -29.00597 -27.05439 -26.58151 -24.96204 -23.74383 -22.25300 -21.89801 -21.36297 -20.84526 -20.57101 -19.73413 -18.51629 -18.29109 -17.40313 -17.16361 -16.68386 -16.22746 -16.04345 -15.60533 -15.39756 -15.13380 -15.10584 -14.91422 -14.80801 -14.72280 -14.31486 -14.27582 -14.06248 -13.84985 -13.69661 -13.38558 -13.08714 -12.62566 -12.47913 -11.98436 -11.96061 -11.64309 -11.23918 -10.85868 -10.54543 -10.35685 -10.31202 -9.92003 -9.44707 -9.37021 -5.02819 0.32165 1.11209 1.26689 1.43493 1.64906 1.75815 1.80664 1.88739 1.95871 2.28258 2.30219 3.04891 3.15478 3.38480 3.47209 3.50888 3.69358 3.76321 3.80355 3.82470 3.90272 3.93976 4.02785 4.16670 4.24719 4.35877 4.38718 4.51912 4.53517 4.61066 4.66022 4.75365 4.79023 4.80538 4.85533 5.00335 5.28674 5.30874 5.52612 5.72899 5.81600 6.10142 6.22730 6.29640 6.73045 7.01967 7.18011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.037 4.037 3 Si 0.686 3.314 4 C -0.164 4.164 5 C 0.029 3.971 6 N -0.535 5.535 7 C -0.060 4.060 8 C 0.596 3.404 9 O -0.519 6.519 10 N -0.717 5.717 11 C 0.123 3.877 12 H 0.110 0.890 13 C -0.147 4.147 14 C -0.129 4.129 15 H 0.095 0.905 16 C 0.114 3.886 17 N -0.458 5.458 18 C -0.060 4.060 19 C -0.029 4.029 20 N -0.496 5.496 21 C 0.184 3.816 22 C -0.135 4.135 23 C -0.069 4.069 24 H 0.380 0.620 25 H 0.072 0.928 26 H -0.257 1.257 27 H -0.253 1.253 28 H 0.168 0.832 29 H 0.418 0.582 30 H 0.394 0.606 31 H 0.097 0.903 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.202 0.798 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.865 2.185 2.642 6.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.353 6.353 2 C -0.148 4.148 3 Si 0.587 3.413 4 C -0.171 4.171 5 C -0.108 4.108 6 N -0.131 5.131 7 C -0.172 4.172 8 C 0.384 3.616 9 O -0.394 6.394 10 N -0.368 5.368 11 C 0.018 3.982 12 H 0.128 0.872 13 C -0.185 4.185 14 C -0.148 4.148 15 H 0.113 0.887 16 C -0.009 4.009 17 N -0.141 5.141 18 C -0.193 4.193 19 C -0.177 4.177 20 N -0.214 5.214 21 C -0.098 4.098 22 C -0.174 4.174 23 C -0.095 4.095 24 H 0.228 0.772 25 H 0.090 0.910 26 H -0.182 1.182 27 H -0.178 1.178 28 H 0.185 0.815 29 H 0.255 0.745 30 H 0.227 0.773 31 H 0.116 0.884 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.189 0.811 36 H 0.186 0.814 37 H 0.219 0.781 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.392 1.713 1.540 5.864 hybrid contribution 1.460 0.019 -0.415 1.518 sum 6.852 1.731 1.124 7.156 Atomic orbital electron populations 1.86516 1.17530 1.81749 1.49459 1.23980 0.85304 1.09281 0.96259 0.95066 0.80526 0.77943 0.87733 1.18825 1.05145 0.94982 0.98132 1.21671 1.03825 0.94473 0.90811 1.41843 1.40883 1.09686 1.20692 1.20371 1.08719 0.87415 1.00656 1.16989 0.78634 0.86243 0.79781 1.90884 1.43150 1.37253 1.68065 1.45532 1.53816 1.14216 1.23223 1.21789 0.96434 0.87483 0.92484 0.87161 1.23591 0.96912 1.02646 0.95398 1.23106 0.98204 1.00777 0.92752 0.88699 1.21957 0.97361 0.94959 0.86622 1.45584 1.11859 1.24731 1.31904 1.22734 1.01706 0.94211 1.00657 1.22357 0.89574 1.02367 1.03385 1.70326 1.29239 1.06056 1.15751 1.25024 0.84437 1.01907 0.98448 1.23335 0.96938 1.02551 0.94587 1.21219 0.98783 0.95637 0.93860 0.77249 0.91038 1.18183 1.17762 0.81547 0.74480 0.77251 0.88444 0.90602 0.88744 0.88363 0.81073 0.81409 0.78124 0.90310 0.87792 0.82864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.45 12.86 -35.23 -0.45 -0.91 16 2 C -0.04 0.00 3.01 36.01 0.11 0.10 16 3 Si 0.69 -1.20 30.59 -169.99 -5.20 -6.40 16 4 C -0.16 -0.37 5.47 -105.02 -0.57 -0.94 16 5 C 0.03 0.01 10.45 -16.91 -0.18 -0.16 16 6 N -0.53 0.40 5.99 -9.39 -0.06 0.34 16 7 C -0.06 -0.13 7.06 -81.98 -0.58 -0.71 16 8 C 0.60 1.55 7.79 -12.86 -0.10 1.45 16 9 O -0.52 -3.35 16.50 5.19 0.09 -3.27 16 10 N -0.72 0.86 5.26 -54.32 -0.29 0.58 16 11 C 0.12 -0.23 4.30 -67.11 -0.29 -0.52 16 12 H 0.11 -0.02 7.50 -51.93 -0.39 -0.40 16 13 C -0.15 0.36 7.45 -25.78 -0.19 0.16 16 14 C -0.13 0.52 3.85 -89.67 -0.35 0.17 16 15 H 0.09 -0.31 8.14 -51.93 -0.42 -0.73 16 16 C 0.11 -0.44 5.99 -4.04 -0.02 -0.47 16 17 N -0.46 0.28 2.75 -118.57 -0.33 -0.05 16 18 C -0.06 -0.01 11.58 -16.56 -0.19 -0.20 16 19 C -0.03 -0.07 11.87 -17.82 -0.21 -0.29 16 20 N -0.50 -2.27 11.25 -14.67 -0.17 -2.43 16 21 C 0.18 0.26 12.56 -90.38 -1.14 -0.87 16 22 C -0.14 0.62 7.38 -25.92 -0.19 0.43 16 23 C -0.07 -0.24 10.59 -39.12 -0.41 -0.66 16 24 H 0.38 -1.65 8.74 45.56 0.40 -1.25 16 25 H 0.07 -0.08 7.96 -51.92 -0.41 -0.50 16 26 H -0.26 -0.07 7.11 56.52 0.40 0.33 16 27 H -0.25 -0.33 7.11 56.52 0.40 0.08 16 28 H 0.17 -0.23 6.19 -52.49 -0.32 -0.55 16 29 H 0.42 -1.81 8.19 -40.82 -0.33 -2.15 16 30 H 0.39 -1.51 7.83 -40.82 -0.32 -1.83 16 31 H 0.10 -0.33 7.91 -51.93 -0.41 -0.74 16 32 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 33 H 0.09 -0.46 8.14 -51.93 -0.42 -0.89 16 34 H 0.10 -0.49 7.85 -51.93 -0.41 -0.90 16 35 H 0.17 -0.45 8.06 -52.48 -0.42 -0.88 16 36 H 0.17 0.13 8.06 -52.48 -0.42 -0.29 16 37 H 0.20 -0.29 8.06 -52.49 -0.42 -0.71 16 38 H 0.08 -0.38 8.14 -51.93 -0.42 -0.81 16 39 H 0.10 -0.58 8.10 -51.93 -0.42 -1.00 16 40 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 343.83 15.07 5.18 5.18 Total: 0.00 -12.20 343.83 -10.74 -22.93 By element: Atomic # 1 Polarization: -8.29 SS G_CDS: -5.20 Total: -13.49 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -4.32 Total: -2.49 kcal Atomic # 7 Polarization: -0.73 SS G_CDS: -0.83 Total: -1.57 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.37 Total: -4.17 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: -5.20 Total: -6.40 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -12.20 -10.74 -22.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14688108_10543058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.761 kcal (2) G-P(sol) polarization free energy of solvation -12.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds